MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-2-g6a7da9909378) initialized Starting run at 06:42:10 UTC on 2023-03-06. Successfully read inputs file ... Castro git describe: 23.03-1-g11cc0c2de AMReX git describe: 23.03-2-g6a7da9909 Microphysics git describe: 23.03-7-g751f2f5f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015167167 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.381585751 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.389163966 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.361505006 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332149151 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36117935 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327501484 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312371455 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315192094 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314911449 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311914706 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010124474 seconds Ending run at 06:42:14 UTC on 2023-03-06. Run time = 3.606986684 Run time without initialization = 3.424577813 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.606 ... 3.607 ... 3.607 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2818 2.3635 2.4138 66.92% Gravity::make_radial_gravity() 21 0.3207 0.335 0.3501 9.71% Castro::do_advance_ctu() 10 0.09358 0.1452 0.2303 6.39% Castro::initData() 1 0.04009 0.07769 0.1161 3.22% Castro::estTimeStep() 21 0.03315 0.06802 0.11 3.05% amrex::Copy() 193 0.06068 0.07294 0.081 2.25% FabArray::ParallelCopy_finish() 41 0.03598 0.04889 0.07678 2.13% FabArray::setVal() 143 0.0616 0.06729 0.07563 2.10% Castro::reset_internal_energy(Fab) 1008 0.04901 0.05017 0.05172 1.43% FabArray::ParallelCopy_nowait() 41 0.0358 0.04194 0.04394 1.22% Castro::normalize_species() 62 0.04191 0.04242 0.04295 1.19% StateData::FillBoundary(geom) 41 0.03347 0.03693 0.0417 1.16% FillPatchIterator::Initialize 41 0.02791 0.03401 0.03621 1.00% Castro::construct_new_gravity_source() 10 0.02339 0.0259 0.02921 0.81% Gravity::interpolate_monopole_grav() 21 0.0283 0.02863 0.02887 0.80% Castro::computeTemp() 63 0.01928 0.02004 0.02104 0.58% Castro::initialize_do_advance() 10 0.01162 0.01681 0.01805 0.50% VisMF::Write(FabArray) 2 0.01311 0.0137 0.01614 0.45% FabArray::Saxpy() 20 0.01203 0.01372 0.01469 0.41% Castro::initialize_advance() 10 0.007915 0.01087 0.01379 0.38% MultiFab::contains_nan() 20 0.01125 0.01208 0.01309 0.36% FabArray::setDomainBndry() 41 0.007973 0.01088 0.01219 0.34% Castro::construct_old_gravity_source() 10 0.007529 0.0101 0.01092 0.30% Amr::writePlotFile() 2 0.006639 0.009396 0.01027 0.28% Castro::initMFs() 1 0.006764 0.007232 0.008333 0.23% StateData::define() 4 0.005585 0.006148 0.00781 0.22% Castro::enforce_min_density() 62 0.005852 0.006224 0.006475 0.18% Castro::construct_new_source() 50 0.005582 0.006172 0.00638 0.18% main() 1 0.004895 0.005791 0.00628 0.17% Castro::swap_state_time_levels() 10 0.003265 0.004265 0.004606 0.13% Gravity::get_new_grav_vector() 11 0.002893 0.003597 0.003849 0.11% Gravity::get_old_grav_vector() 10 0.001823 0.002457 0.00285 0.08% Amr::coarseTimeStep() 10 0.001674 0.002019 0.002723 0.08% Castro::buildMetrics() 1 0.001583 0.001652 0.001824 0.05% Castro::finalize_do_advance() 10 0.000617 0.001431 0.001691 0.05% Castro::expand_state() 10 0.0006216 0.0007713 0.000893 0.02% Amr::InitAmr() 1 0.0002737 0.000363 0.0006532 0.02% Amr::timeStep() 10 0.0001721 0.0002437 0.0005589 0.02% DistributionMapping::LeastUsedCPUs() 1 1.002e-05 0.0003504 0.0004521 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002767 0.0002991 0.000329 0.01% Castro::clean_state() 62 0.000142 0.0001548 0.0001693 0.00% StateDataPhysBCFunct::() 41 8.648e-05 0.0001035 0.0001231 0.00% Castro::finalize_advance() 10 7.753e-05 9.044e-05 0.0001046 0.00% FabArray::ParallelCopy() 41 6.717e-05 7.377e-05 9.831e-05 0.00% Castro::Castro() 1 5.744e-05 7.299e-05 9.384e-05 0.00% Castro::enforce_consistent_e() 1 7.334e-05 8.421e-05 9.315e-05 0.00% FillPatchSingleLevel 41 7.057e-05 7.833e-05 9.134e-05 0.00% Amr::FinalizeInit() 1 3.871e-06 1.532e-05 8.866e-05 0.00% Castro::do_old_sources() 10 4.919e-05 5.92e-05 7.365e-05 0.00% Castro::subcycle_advance_ctu() 10 3.699e-05 5.335e-05 7.28e-05 0.00% Amr::writeSmallPlotFile() 1 3.288e-05 5.655e-05 7.227e-05 0.00% Castro::construct_old_source() 50 5.189e-05 6.537e-05 7.188e-05 0.00% Castro::do_new_sources() 10 4.777e-05 6.097e-05 6.783e-05 0.00% FabArrayBase::getCPC() 41 4.778e-05 5.531e-05 6.658e-05 0.00% Castro::advance() 10 3.589e-05 4.499e-05 6.234e-05 0.00% Castro::apply_source_to_state() 20 3.786e-05 4.396e-05 6.145e-05 0.00% Castro::construct_old_gravity() 10 3.505e-05 4.048e-05 4.857e-05 0.00% Castro::construct_new_gravity() 10 3.179e-05 3.933e-05 4.755e-05 0.00% Amr::defBaseLevel() 1 2.672e-05 3.156e-05 3.774e-05 0.00% Castro::enforce_speed_limit() 62 2.172e-05 2.64e-05 3.229e-05 0.00% FabArrayBase::CPC::define() 2 2.341e-05 2.685e-05 3.019e-05 0.00% Castro::post_timestep() 10 1.569e-05 2.179e-05 2.915e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.431e-05 2.045e-05 2.886e-05 0.00% Castro::check_for_nan() 20 2.082e-05 2.358e-05 2.68e-05 0.00% Amr::initSubcycle() 1 8.914e-06 1.13e-05 1.648e-05 0.00% Gravity::swapTimeLevels() 10 8.16e-06 1.169e-05 1.495e-05 0.00% Gravity::set_mass_offset() 10 8.575e-06 9.967e-06 1.147e-05 0.00% Castro::post_regrid() 1 1.974e-06 4.014e-06 1.105e-05 0.00% Castro::FluxRegCrseInit 10 5.667e-06 8.299e-06 1.092e-05 0.00% Castro::create_source_corrector() 10 8.059e-06 9.225e-06 1.085e-05 0.00% Castro::computeNewDt() 9 8.014e-06 8.811e-06 9.514e-06 0.00% Castro::post_init() 1 2.891e-06 4.518e-06 9.245e-06 0.00% Amr::InitializeInit() 1 2.021e-06 2.852e-06 6.894e-06 0.00% Castro::retry_advance_ctu() 10 4.851e-06 5.546e-06 6.255e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.691e-06 4.485e-06 5.353e-06 0.00% Castro::computeInitialDt() 2 2.947e-06 4.051e-06 4.692e-06 0.00% Castro::FluxRegFineAdd() 10 2.064e-06 2.431e-06 3.095e-06 0.00% Amr::init() 1 1.744e-06 2.17e-06 2.711e-06 0.00% Amr::initialInit() 1 9.37e-07 1.335e-06 1.963e-06 0.00% DistributionMapping::Distribute() 1 9.06e-07 1.236e-06 1.489e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.606 3.607 3.607 100.00% Amr::coarseTimeStep() 10 3.408 3.408 3.408 94.49% Amr::timeStep() 10 3.396 3.397 3.397 94.18% Castro::advance() 10 3.38 3.38 3.381 93.73% Castro::subcycle_advance_ctu() 10 3.299 3.305 3.312 91.81% Castro::do_advance_ctu() 10 3.299 3.305 3.311 91.81% Castro::construct_ctu_hydro_source() 10 2.282 2.363 2.414 66.92% Gravity::make_radial_gravity() 21 0.3362 0.352 0.3639 10.09% Castro::construct_old_gravity() 10 0.2026 0.215 0.2249 6.23% Gravity::get_old_grav_vector() 10 0.2018 0.2143 0.2243 6.22% Gravity::get_new_grav_vector() 11 0.2181 0.2207 0.2227 6.18% Castro::construct_new_gravity() 10 0.1943 0.1962 0.1976 5.48% FillPatchIterator::Initialize 41 0.1617 0.173 0.1852 5.13% Amr::init() 1 0.1815 0.1819 0.182 5.04% Castro::initialize_do_advance() 10 0.1569 0.164 0.1709 4.74% Amr::initialInit() 1 0.1658 0.1663 0.1666 4.62% FillPatchSingleLevel 41 0.1148 0.1281 0.1493 4.14% Amr::InitializeInit() 1 0.06163 0.09915 0.1384 3.84% Amr::defBaseLevel() 1 0.06162 0.09915 0.1384 3.84% Castro::expand_state() 10 0.1085 0.1165 0.1234 3.42% Castro::clean_state() 62 0.1165 0.1184 0.1213 3.36% Castro::initData() 1 0.04373 0.08155 0.1197 3.32% FabArray::ParallelCopy() 41 0.079 0.09099 0.1128 3.13% Castro::estTimeStep() 21 0.03315 0.06802 0.11 3.05% Amr::FinalizeInit() 1 0.028 0.06715 0.1046 2.90% amrex::Copy() 193 0.06068 0.07294 0.081 2.25% Castro::computeInitialDt() 2 0.002013 0.04115 0.07833 2.17% Castro::initialize_advance() 10 0.06445 0.07138 0.0777 2.15% FabArray::ParallelCopy_finish() 41 0.03598 0.04889 0.07678 2.13% FabArray::setVal() 143 0.0616 0.06729 0.07563 2.10% Castro::computeTemp() 63 0.06931 0.07051 0.07308 2.03% Castro::do_new_sources() 10 0.06089 0.06525 0.07256 2.01% Castro::reset_internal_energy(MultiFab) 63 0.0493 0.05047 0.05204 1.44% Castro::reset_internal_energy(Fab) 1008 0.04901 0.05017 0.05172 1.43% Castro::do_old_sources() 10 0.04168 0.04527 0.04831 1.34% FabArray::ParallelCopy_nowait() 41 0.03589 0.04202 0.04402 1.22% Castro::normalize_species() 62 0.04191 0.04242 0.04295 1.19% StateDataPhysBCFunct::() 41 0.03358 0.03703 0.04182 1.16% StateData::FillBoundary(geom) 41 0.03347 0.03693 0.0417 1.16% Castro::construct_new_source() 50 0.0297 0.03207 0.03553 0.99% Castro::construct_new_gravity_source() 10 0.02339 0.0259 0.02921 0.81% Gravity::interpolate_monopole_grav() 21 0.0283 0.02863 0.02887 0.80% Amr::writePlotFile() 2 0.02553 0.02575 0.02601 0.72% Castro::post_init() 1 0.02513 0.02545 0.02559 0.71% Castro::post_timestep() 10 0.01566 0.01603 0.01648 0.46% VisMF::Write(FabArray) 2 0.01311 0.0137 0.01614 0.45% Castro::apply_source_to_state() 20 0.01207 0.01377 0.01473 0.41% FabArray::Saxpy() 20 0.01203 0.01372 0.01469 0.41% Castro::check_for_nan() 20 0.01127 0.0121 0.01312 0.36% MultiFab::contains_nan() 20 0.01125 0.01208 0.01309 0.36% FabArray::setDomainBndry() 41 0.007973 0.01088 0.01219 0.34% Castro::Castro() 1 0.01068 0.01105 0.01187 0.33% Castro::construct_old_source() 50 0.007581 0.01017 0.011 0.30% Castro::construct_old_gravity_source() 10 0.007529 0.0101 0.01092 0.30% Castro::computeNewDt() 9 0.008574 0.008577 0.00858 0.24% Castro::initMFs() 1 0.006764 0.007232 0.008333 0.23% AmrLevel::AmrLevel(dm) 1 0.005602 0.006169 0.007839 0.22% StateData::define() 4 0.005585 0.006148 0.00781 0.22% Castro::enforce_min_density() 62 0.005852 0.006224 0.006475 0.18% Castro::swap_state_time_levels() 10 0.003265 0.004265 0.004606 0.13% Castro::finalize_advance() 10 0.002948 0.003504 0.004075 0.11% Castro::buildMetrics() 1 0.001701 0.001782 0.001971 0.05% Castro::finalize_do_advance() 10 0.000617 0.001431 0.001691 0.05% Castro::post_regrid() 1 0.001529 0.001605 0.001675 0.05% Amr::InitAmr() 1 0.0002827 0.0003743 0.0006692 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.493e-05 0.0003561 0.0004587 0.01% DistributionMapping::LeastUsedCPUs() 1 1.002e-05 0.0003504 0.0004521 0.01% FabArrayBase::getCPC() 41 7.213e-05 8.216e-05 9.677e-05 0.00% Castro::enforce_consistent_e() 1 7.334e-05 8.421e-05 9.315e-05 0.00% Amr::writeSmallPlotFile() 1 3.288e-05 5.655e-05 7.227e-05 0.00% Castro::enforce_speed_limit() 62 2.172e-05 2.64e-05 3.229e-05 0.00% FabArrayBase::CPC::define() 2 2.341e-05 2.685e-05 3.019e-05 0.00% Amr::initSubcycle() 1 8.914e-06 1.13e-05 1.648e-05 0.00% Gravity::swapTimeLevels() 10 8.16e-06 1.169e-05 1.495e-05 0.00% Gravity::set_mass_offset() 10 8.575e-06 9.967e-06 1.147e-05 0.00% Castro::FluxRegCrseInit 10 5.667e-06 8.299e-06 1.092e-05 0.00% Castro::create_source_corrector() 10 8.059e-06 9.225e-06 1.085e-05 0.00% Castro::retry_advance_ctu() 10 4.851e-06 5.546e-06 6.255e-06 0.00% Castro::FluxRegFineAdd() 10 2.064e-06 2.431e-06 3.095e-06 0.00% DistributionMapping::Distribute() 1 9.06e-07 1.236e-06 1.489e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-2-g6a7da9909378) finalized