MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-3-g1ffc6e427e3a) initialized Starting run at 06:41:43 UTC on 2023-03-07. Successfully read inputs file ... Castro git describe: 23.03-1-g11cc0c2de AMReX git describe: 23.03-3-g1ffc6e427 Microphysics git describe: 23.03-8-g9b7b620f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01632227 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358686293 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.339512673 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.340268888 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333344472 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353075572 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341900286 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314869433 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318109216 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317086492 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316175573 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010553242 seconds Ending run at 06:41:46 UTC on 2023-03-07. Run time = 3.54198582 Run time without initialization = 3.351135644 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.54 ... 3.542 ... 3.542 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2864 2.3589 2.4040 67.87% Gravity::make_radial_gravity() 21 0.324 0.3336 0.3438 9.71% Castro::do_advance_ctu() 10 0.01036 0.05984 0.1337 3.77% Castro::estTimeStep() 21 0.02545 0.07298 0.119 3.36% Castro::initData() 1 0.03845 0.07661 0.1143 3.23% FabArray::setVal() 143 0.06366 0.07351 0.08666 2.45% FabArray::ParallelCopy_finish() 41 0.03559 0.05475 0.07878 2.22% amrex::Copy() 193 0.06164 0.07169 0.078 2.20% Castro::reset_internal_energy(Fab) 1008 0.04779 0.04992 0.05203 1.47% Castro::normalize_species() 62 0.04125 0.04255 0.0444 1.25% FabArray::ParallelCopy_nowait() 41 0.03743 0.0415 0.04309 1.22% StateData::FillBoundary(geom) 41 0.03345 0.03591 0.04125 1.16% FillPatchIterator::Initialize 41 0.02916 0.03356 0.03689 1.04% Castro::construct_new_gravity_source() 10 0.02386 0.0278 0.03308 0.93% Gravity::interpolate_monopole_grav() 21 0.02831 0.02925 0.03155 0.89% Castro::computeTemp() 63 0.01936 0.02005 0.02095 0.59% Castro::initialize_do_advance() 10 0.01254 0.01756 0.02051 0.58% VisMF::Write(FabArray) 2 0.01416 0.01486 0.01752 0.49% FabArray::Saxpy() 20 0.01201 0.01427 0.01533 0.43% Castro::initialize_advance() 10 0.008494 0.01126 0.01412 0.40% MultiFab::contains_nan() 20 0.01147 0.01226 0.01346 0.38% FabArray::setDomainBndry() 41 0.008094 0.01033 0.01176 0.33% Castro::construct_old_gravity_source() 10 0.007517 0.01035 0.01119 0.32% Amr::writePlotFile() 2 0.006755 0.00949 0.01018 0.29% Amr::InitAmr() 1 0.0002787 0.001299 0.008309 0.23% DistributionMapping::LeastUsedCPUs() 1 8.48e-06 0.007017 0.008032 0.23% Castro::initMFs() 1 0.006834 0.006975 0.007731 0.22% Castro::construct_new_source() 50 0.005869 0.006385 0.007033 0.20% main() 1 0.004982 0.006253 0.006765 0.19% Castro::enforce_min_density() 62 0.00587 0.006226 0.00651 0.18% StateData::define() 4 0.005547 0.00569 0.006388 0.18% Castro::swap_state_time_levels() 10 0.003273 0.004415 0.004656 0.13% Gravity::get_new_grav_vector() 11 0.003082 0.003576 0.003955 0.11% Amr::coarseTimeStep() 10 0.001865 0.002523 0.003139 0.09% Gravity::get_old_grav_vector() 10 0.001763 0.002352 0.002855 0.08% Castro::finalize_do_advance() 10 0.0007807 0.00157 0.001992 0.06% Castro::buildMetrics() 1 0.001575 0.001627 0.001874 0.05% Castro::expand_state() 10 0.0006842 0.0008728 0.001118 0.03% Amr::timeStep() 10 0.0001676 0.0002573 0.0005283 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002716 0.0002871 0.0003119 0.01% Castro::clean_state() 62 0.0001314 0.0001435 0.0001572 0.00% StateDataPhysBCFunct::() 41 8.689e-05 0.0001003 0.000127 0.00% Castro::Castro() 1 5.553e-05 7.845e-05 0.0001175 0.00% Castro::finalize_advance() 10 7.875e-05 9.359e-05 0.000107 0.00% Castro::enforce_consistent_e() 1 7.308e-05 8.342e-05 9.421e-05 0.00% FabArray::ParallelCopy() 41 6.768e-05 7.511e-05 8.625e-05 0.00% FillPatchSingleLevel 41 6.864e-05 7.63e-05 8.61e-05 0.00% Amr::FinalizeInit() 1 4.104e-06 1.456e-05 8.266e-05 0.00% Castro::construct_old_source() 50 4.677e-05 6.797e-05 8.061e-05 0.00% Amr::writeSmallPlotFile() 1 3.388e-05 5.888e-05 7.986e-05 0.00% Castro::subcycle_advance_ctu() 10 3.973e-05 5.315e-05 7.638e-05 0.00% Castro::do_old_sources() 10 4.636e-05 6.025e-05 7.003e-05 0.00% FabArrayBase::getCPC() 41 5.132e-05 5.596e-05 6.6e-05 0.00% Castro::do_new_sources() 10 5.094e-05 5.98e-05 6.515e-05 0.00% Amr::defBaseLevel() 1 3.125e-05 4.465e-05 5.782e-05 0.00% Castro::advance() 10 3.794e-05 4.64e-05 5.624e-05 0.00% Castro::apply_source_to_state() 20 3.892e-05 4.448e-05 5.43e-05 0.00% Castro::construct_old_gravity() 10 3.716e-05 4.2e-05 5.065e-05 0.00% Castro::construct_new_gravity() 10 3.472e-05 4.131e-05 4.669e-05 0.00% Castro::post_timestep() 10 1.6e-05 2.6e-05 4.176e-05 0.00% Castro::enforce_speed_limit() 62 2.382e-05 2.818e-05 3.438e-05 0.00% FabArrayBase::CPC::define() 2 2.027e-05 2.593e-05 3.282e-05 0.00% Castro::check_for_nan() 20 2.254e-05 2.425e-05 2.9e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.494e-05 2.037e-05 2.428e-05 0.00% Gravity::swapTimeLevels() 10 8.707e-06 1.264e-05 1.982e-05 0.00% Castro::create_source_corrector() 10 7.449e-06 1.138e-05 1.948e-05 0.00% Gravity::set_mass_offset() 10 8.485e-06 9.79e-06 1.099e-05 0.00% Amr::initSubcycle() 1 9.02e-06 9.632e-06 1.069e-05 0.00% Castro::computeNewDt() 9 8.117e-06 8.749e-06 9.407e-06 0.00% Castro::FluxRegCrseInit 10 6.789e-06 7.91e-06 8.891e-06 0.00% Amr::InitializeInit() 1 1.828e-06 3.336e-06 8.44e-06 0.00% Castro::retry_advance_ctu() 10 4.918e-06 5.475e-06 6.233e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.73e-06 4.612e-06 6.068e-06 0.00% Castro::post_init() 1 2.713e-06 3.965e-06 5.336e-06 0.00% Castro::computeInitialDt() 2 3.154e-06 4.061e-06 4.846e-06 0.00% Castro::post_regrid() 1 2.585e-06 3.267e-06 4.795e-06 0.00% Castro::FluxRegFineAdd() 10 2.023e-06 2.29e-06 2.506e-06 0.00% Amr::init() 1 1.839e-06 2.092e-06 2.344e-06 0.00% Amr::initialInit() 1 1.099e-06 1.288e-06 1.647e-06 0.00% DistributionMapping::Distribute() 1 8.23e-07 1.008e-06 1.278e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.54 3.542 3.542 100.00% Amr::coarseTimeStep() 10 3.334 3.334 3.334 94.12% Amr::timeStep() 10 3.321 3.321 3.322 93.79% Castro::advance() 10 3.304 3.305 3.306 93.33% Castro::subcycle_advance_ctu() 10 3.216 3.225 3.233 91.29% Castro::do_advance_ctu() 10 3.216 3.225 3.233 91.28% Castro::construct_ctu_hydro_source() 10 2.286 2.359 2.404 67.87% Gravity::make_radial_gravity() 21 0.3403 0.3502 0.3576 10.10% Gravity::get_new_grav_vector() 11 0.2261 0.2289 0.2307 6.51% Castro::construct_old_gravity() 10 0.1991 0.2071 0.2134 6.03% Gravity::get_old_grav_vector() 10 0.1981 0.2062 0.2128 6.01% Castro::construct_new_gravity() 10 0.1997 0.2023 0.204 5.76% Amr::init() 1 0.1824 0.1894 0.1904 5.38% FillPatchIterator::Initialize 41 0.164 0.1764 0.1898 5.36% Castro::initialize_do_advance() 10 0.1603 0.169 0.1772 5.00% Amr::initialInit() 1 0.1659 0.1729 0.1741 4.92% FillPatchSingleLevel 41 0.1201 0.1325 0.1522 4.30% Amr::InitializeInit() 1 0.06146 0.1049 0.1438 4.06% Amr::defBaseLevel() 1 0.06146 0.1049 0.1438 4.06% Castro::expand_state() 10 0.1106 0.1211 0.1302 3.68% Castro::clean_state() 62 0.1144 0.1183 0.1231 3.47% Castro::estTimeStep() 21 0.02545 0.07298 0.119 3.36% Castro::initData() 1 0.04246 0.08063 0.1185 3.35% FabArray::ParallelCopy() 41 0.07867 0.09641 0.1164 3.29% Amr::FinalizeInit() 1 0.03031 0.06795 0.1062 3.00% FabArray::setVal() 143 0.06366 0.07351 0.08666 2.45% Castro::initialize_advance() 10 0.06807 0.07628 0.08539 2.41% Castro::do_new_sources() 10 0.0608 0.06939 0.08203 2.32% FabArray::ParallelCopy_finish() 41 0.03559 0.05475 0.07878 2.22% Castro::computeInitialDt() 2 0.002223 0.0401 0.07863 2.22% amrex::Copy() 193 0.06164 0.07169 0.078 2.20% Castro::computeTemp() 63 0.06752 0.07026 0.07291 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04808 0.05021 0.05232 1.48% Castro::reset_internal_energy(Fab) 1008 0.04779 0.04992 0.05203 1.47% Castro::do_old_sources() 10 0.04062 0.0451 0.04647 1.31% Castro::normalize_species() 62 0.04125 0.04255 0.0444 1.25% FabArray::ParallelCopy_nowait() 41 0.03752 0.04159 0.04318 1.22% StateDataPhysBCFunct::() 41 0.03355 0.03601 0.04138 1.17% StateData::FillBoundary(geom) 41 0.03345 0.03591 0.04125 1.16% Castro::construct_new_source() 50 0.0304 0.03418 0.03958 1.12% Castro::construct_new_gravity_source() 10 0.02386 0.0278 0.03308 0.93% Gravity::interpolate_monopole_grav() 21 0.02831 0.02925 0.03155 0.89% Castro::post_init() 1 0.02726 0.02753 0.02783 0.79% Amr::writePlotFile() 2 0.02685 0.02714 0.02743 0.77% VisMF::Write(FabArray) 2 0.01416 0.01486 0.01752 0.49% Castro::post_timestep() 10 0.01586 0.0162 0.01648 0.47% Castro::apply_source_to_state() 20 0.01205 0.01431 0.01537 0.43% FabArray::Saxpy() 20 0.01201 0.01427 0.01533 0.43% Castro::check_for_nan() 20 0.01149 0.01228 0.01348 0.38% MultiFab::contains_nan() 20 0.01147 0.01226 0.01346 0.38% Castro::Castro() 1 0.01131 0.01152 0.01203 0.34% FabArray::setDomainBndry() 41 0.008094 0.01033 0.01176 0.33% Castro::construct_old_source() 50 0.007564 0.01042 0.01127 0.32% Castro::construct_old_gravity_source() 10 0.007517 0.01035 0.01119 0.32% Castro::computeNewDt() 9 0.008643 0.008651 0.008659 0.24% Amr::InitAmr() 1 0.0002878 0.001309 0.008318 0.23% DistributionMapping::SFCProcessorMapDoIt() 1 1.303e-05 0.007022 0.008039 0.23% DistributionMapping::LeastUsedCPUs() 1 8.48e-06 0.007017 0.008032 0.23% Castro::initMFs() 1 0.006834 0.006975 0.007731 0.22% Castro::enforce_min_density() 62 0.00587 0.006226 0.00651 0.18% AmrLevel::AmrLevel(dm) 1 0.00557 0.00571 0.006407 0.18% StateData::define() 4 0.005547 0.00569 0.006388 0.18% Castro::swap_state_time_levels() 10 0.003273 0.004415 0.004656 0.13% Castro::finalize_advance() 10 0.002984 0.003689 0.004406 0.12% Castro::buildMetrics() 1 0.001691 0.001755 0.002029 0.06% Castro::finalize_do_advance() 10 0.0007807 0.00157 0.001992 0.06% Castro::post_regrid() 1 0.001532 0.001577 0.001624 0.05% Castro::enforce_consistent_e() 1 7.308e-05 8.342e-05 9.421e-05 0.00% FabArrayBase::getCPC() 41 7.404e-05 8.189e-05 9.299e-05 0.00% Amr::writeSmallPlotFile() 1 3.388e-05 5.888e-05 7.986e-05 0.00% Castro::enforce_speed_limit() 62 2.382e-05 2.818e-05 3.438e-05 0.00% FabArrayBase::CPC::define() 2 2.027e-05 2.593e-05 3.282e-05 0.00% Gravity::swapTimeLevels() 10 8.707e-06 1.264e-05 1.982e-05 0.00% Castro::create_source_corrector() 10 7.449e-06 1.138e-05 1.948e-05 0.00% Gravity::set_mass_offset() 10 8.485e-06 9.79e-06 1.099e-05 0.00% Amr::initSubcycle() 1 9.02e-06 9.632e-06 1.069e-05 0.00% Castro::FluxRegCrseInit 10 6.789e-06 7.91e-06 8.891e-06 0.00% Castro::retry_advance_ctu() 10 4.918e-06 5.475e-06 6.233e-06 0.00% Castro::FluxRegFineAdd() 10 2.023e-06 2.29e-06 2.506e-06 0.00% DistributionMapping::Distribute() 1 8.23e-07 1.008e-06 1.278e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-3-g1ffc6e427e3a) finalized