MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-6-g5b7fa9867d02) initialized Starting run at 06:42:30 UTC on 2023-03-09. Successfully read inputs file ... Castro git describe: 23.03-2-g0304294be AMReX git describe: 23.03-6-g5b7fa9867 Microphysics git describe: 23.03-12-g1f07dde0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016217585 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.368687261 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.348633406 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.332771599 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33352953 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361090444 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336488934 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315501939 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315140995 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315749561 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.316605572 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.065106346 seconds Ending run at 06:42:34 UTC on 2023-03-09. Run time = 3.631230329 Run time without initialization = 3.41655544 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.63 ... 3.631 ... 3.631 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3051 2.3543 2.3925 65.89% Gravity::make_radial_gravity() 21 0.314 0.3276 0.3374 9.29% Castro::estTimeStep() 21 0.02448 0.09324 0.1466 4.04% Castro::do_advance_ctu() 10 0.04854 0.09205 0.1437 3.96% Castro::initData() 1 0.03855 0.08298 0.1418 3.91% FabArray::setVal() 143 0.06524 0.07338 0.08365 2.30% amrex::Copy() 193 0.06847 0.07297 0.07823 2.15% Amr::writePlotFile() 2 0.06159 0.06445 0.06532 1.80% Castro::reset_internal_energy(Fab) 1008 0.04795 0.05026 0.05252 1.45% FabArray::ParallelCopy_finish() 41 0.03464 0.044 0.05163 1.42% FabArray::ParallelCopy_nowait() 41 0.03991 0.04232 0.04338 1.19% Castro::normalize_species() 62 0.0415 0.04225 0.04301 1.18% StateData::FillBoundary(geom) 41 0.03261 0.03581 0.04118 1.13% FillPatchIterator::Initialize 41 0.03016 0.03405 0.03654 1.01% Castro::construct_new_gravity_source() 10 0.02396 0.02687 0.03002 0.83% Gravity::interpolate_monopole_grav() 21 0.02798 0.02852 0.02964 0.82% Castro::computeTemp() 63 0.01873 0.01987 0.02131 0.59% Castro::initialize_do_advance() 10 0.01294 0.01804 0.02128 0.59% VisMF::Write(FabArray) 2 0.01324 0.01403 0.01701 0.47% FabArray::Saxpy() 20 0.01278 0.01451 0.01538 0.42% Castro::initialize_advance() 10 0.009603 0.01202 0.01461 0.40% MultiFab::contains_nan() 20 0.01127 0.01271 0.01396 0.38% FabArray::setDomainBndry() 41 0.008777 0.01147 0.01292 0.36% Castro::construct_old_gravity_source() 10 0.008953 0.01074 0.01139 0.31% Castro::initMFs() 1 0.006834 0.00786 0.01087 0.30% StateData::define() 4 0.005623 0.006306 0.008317 0.23% Castro::construct_new_source() 50 0.006176 0.006411 0.00661 0.18% main() 1 0.005445 0.006142 0.006602 0.18% Castro::enforce_min_density() 62 0.005731 0.005967 0.006201 0.17% Gravity::get_new_grav_vector() 11 0.003072 0.003857 0.005623 0.15% Castro::swap_state_time_levels() 10 0.003473 0.004715 0.004915 0.14% Amr::coarseTimeStep() 10 0.001198 0.002029 0.002779 0.08% Gravity::get_old_grav_vector() 10 0.001799 0.002322 0.0027 0.07% Castro::buildMetrics() 1 0.001596 0.001802 0.002385 0.07% Castro::finalize_do_advance() 10 0.0006539 0.0015 0.001878 0.05% Castro::expand_state() 10 0.000822 0.001 0.001127 0.03% Amr::InitAmr() 1 0.0002808 0.0003549 0.0004964 0.01% Amr::timeStep() 10 0.0001896 0.000245 0.0004266 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002704 0.0002873 0.0003106 0.01% DistributionMapping::LeastUsedCPUs() 1 8.647e-06 0.0001879 0.0002683 0.01% Castro::clean_state() 62 0.0001354 0.0001486 0.0001719 0.00% Amr::FinalizeInit() 1 4.145e-06 1.881e-05 0.0001141 0.00% Castro::finalize_advance() 10 8.389e-05 9.554e-05 0.0001096 0.00% Castro::enforce_consistent_e() 1 7.611e-05 8.679e-05 9.784e-05 0.00% StateDataPhysBCFunct::() 41 8.168e-05 8.756e-05 9.289e-05 0.00% FabArray::ParallelCopy() 41 6.711e-05 7.92e-05 9.039e-05 0.00% Castro::Castro() 1 6.35e-05 7.226e-05 8.611e-05 0.00% Castro::construct_old_source() 50 5.849e-05 6.886e-05 7.983e-05 0.00% Castro::subcycle_advance_ctu() 10 3.954e-05 5.116e-05 7.818e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 5.119e-05 7.71e-05 0.00% FillPatchSingleLevel 41 6.157e-05 6.695e-05 7.22e-05 0.00% Castro::do_new_sources() 10 5.174e-05 6.347e-05 6.886e-05 0.00% Castro::do_old_sources() 10 5.217e-05 5.903e-05 6.38e-05 0.00% FabArrayBase::getCPC() 41 3.741e-05 4.791e-05 5.954e-05 0.00% Castro::apply_source_to_state() 20 3.64e-05 4.556e-05 5.37e-05 0.00% Castro::construct_new_gravity() 10 3.761e-05 4.351e-05 5.242e-05 0.00% Castro::advance() 10 3.964e-05 4.458e-05 4.993e-05 0.00% Castro::construct_old_gravity() 10 3.8e-05 4.114e-05 4.862e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.509e-05 2.634e-05 4.191e-05 0.00% FabArrayBase::CPC::define() 2 2.101e-05 2.606e-05 3.385e-05 0.00% Castro::enforce_speed_limit() 62 2.394e-05 2.765e-05 3.2e-05 0.00% Castro::check_for_nan() 20 2.308e-05 2.471e-05 2.613e-05 0.00% Amr::defBaseLevel() 1 1.565e-05 1.95e-05 2.271e-05 0.00% Castro::post_timestep() 10 1.607e-05 1.733e-05 2.008e-05 0.00% Gravity::swapTimeLevels() 10 9.508e-06 1.288e-05 1.949e-05 0.00% Amr::initSubcycle() 1 8.438e-06 1.08e-05 1.649e-05 0.00% Gravity::set_mass_offset() 10 8.701e-06 1.067e-05 1.54e-05 0.00% Castro::FluxRegCrseInit 10 7.884e-06 8.959e-06 1.056e-05 0.00% Castro::computeNewDt() 9 7.214e-06 8.607e-06 9.851e-06 0.00% Castro::create_source_corrector() 10 7.208e-06 8.317e-06 9.62e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.647e-06 5.167e-06 6.369e-06 0.00% Castro::retry_advance_ctu() 10 4.745e-06 5.313e-06 6.328e-06 0.00% Amr::InitializeInit() 1 2.043e-06 3.224e-06 5.949e-06 0.00% Castro::computeInitialDt() 2 3.571e-06 4.284e-06 5.055e-06 0.00% Castro::post_init() 1 3.073e-06 3.979e-06 4.577e-06 0.00% Castro::post_regrid() 1 2.009e-06 2.808e-06 4.006e-06 0.00% Amr::init() 1 1.725e-06 2.295e-06 2.941e-06 0.00% Castro::FluxRegFineAdd() 10 1.767e-06 2.244e-06 2.719e-06 0.00% Amr::initialInit() 1 1.317e-06 1.676e-06 2.302e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 1.3e-06 1.482e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.63 3.631 3.631 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 92.11% Amr::timeStep() 10 3.332 3.333 3.334 91.81% Castro::advance() 10 3.316 3.317 3.318 91.36% Castro::subcycle_advance_ctu() 10 3.232 3.238 3.243 89.29% Castro::do_advance_ctu() 10 3.232 3.238 3.242 89.29% Castro::construct_ctu_hydro_source() 10 2.305 2.354 2.392 65.89% Gravity::make_radial_gravity() 21 0.3296 0.3444 0.3557 9.80% Gravity::get_new_grav_vector() 11 0.2219 0.2241 0.2262 6.23% Amr::init() 1 0.214 0.2141 0.2142 5.90% Castro::construct_old_gravity() 10 0.1938 0.2031 0.2119 5.84% Gravity::get_old_grav_vector() 10 0.1932 0.2024 0.2112 5.82% Castro::construct_new_gravity() 10 0.1974 0.1992 0.2004 5.52% Amr::initialInit() 1 0.1976 0.1979 0.198 5.45% FillPatchIterator::Initialize 41 0.1556 0.168 0.1778 4.90% Castro::initialize_do_advance() 10 0.1538 0.1644 0.1721 4.74% Amr::InitializeInit() 1 0.05944 0.1055 0.1689 4.65% Amr::defBaseLevel() 1 0.05943 0.1055 0.1689 4.65% Castro::estTimeStep() 21 0.02448 0.09324 0.1466 4.04% Castro::initData() 1 0.04242 0.08687 0.1454 4.00% Amr::FinalizeInit() 1 0.02889 0.09237 0.1385 3.81% FillPatchSingleLevel 41 0.1138 0.1224 0.1286 3.54% Castro::expand_state() 10 0.1068 0.116 0.1249 3.44% Castro::clean_state() 62 0.1139 0.1179 0.1212 3.34% Castro::computeInitialDt() 2 0.002049 0.06562 0.1117 3.08% FabArray::ParallelCopy() 41 0.07816 0.08647 0.09212 2.54% FabArray::setVal() 143 0.06524 0.07338 0.08365 2.30% Castro::initialize_advance() 10 0.07108 0.07575 0.08157 2.25% Amr::writePlotFile() 2 0.08137 0.08146 0.08156 2.25% amrex::Copy() 193 0.06847 0.07297 0.07823 2.15% Castro::do_new_sources() 10 0.06145 0.06888 0.07681 2.12% Castro::computeTemp() 63 0.0674 0.07042 0.07352 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04823 0.05055 0.05283 1.45% Castro::reset_internal_energy(Fab) 1008 0.04795 0.05026 0.05252 1.45% FabArray::ParallelCopy_finish() 41 0.03464 0.044 0.05163 1.42% Castro::do_old_sources() 10 0.04617 0.04675 0.04757 1.31% FabArray::ParallelCopy_nowait() 41 0.03999 0.04239 0.04345 1.20% Castro::normalize_species() 62 0.0415 0.04225 0.04301 1.18% StateDataPhysBCFunct::() 41 0.03269 0.0359 0.04126 1.14% StateData::FillBoundary(geom) 41 0.03261 0.03581 0.04118 1.13% Castro::construct_new_source() 50 0.03032 0.03328 0.03663 1.01% Castro::construct_new_gravity_source() 10 0.02396 0.02687 0.03002 0.83% Gravity::interpolate_monopole_grav() 21 0.02798 0.02852 0.02964 0.82% Castro::post_init() 1 0.026 0.02619 0.02636 0.73% VisMF::Write(FabArray) 2 0.01324 0.01403 0.01701 0.47% Castro::post_timestep() 10 0.01555 0.01593 0.01624 0.45% Castro::apply_source_to_state() 20 0.01282 0.01456 0.01542 0.42% FabArray::Saxpy() 20 0.01278 0.01451 0.01538 0.42% Castro::Castro() 1 0.01104 0.01207 0.0151 0.42% Castro::check_for_nan() 20 0.01129 0.01274 0.01398 0.39% MultiFab::contains_nan() 20 0.01127 0.01271 0.01396 0.38% FabArray::setDomainBndry() 41 0.008777 0.01147 0.01292 0.36% Castro::construct_old_source() 50 0.009011 0.01081 0.01146 0.32% Castro::construct_old_gravity_source() 10 0.008953 0.01074 0.01139 0.31% Castro::initMFs() 1 0.006834 0.00786 0.01087 0.30% Castro::computeNewDt() 9 0.008728 0.008735 0.008744 0.24% AmrLevel::AmrLevel(dm) 1 0.00564 0.006332 0.008338 0.23% StateData::define() 4 0.005623 0.006306 0.008317 0.23% Castro::enforce_min_density() 62 0.005731 0.005967 0.006201 0.17% Castro::swap_state_time_levels() 10 0.003473 0.004715 0.004915 0.14% Castro::finalize_advance() 10 0.002989 0.003424 0.003873 0.11% Castro::buildMetrics() 1 0.001714 0.001946 0.002598 0.07% Castro::finalize_do_advance() 10 0.0006539 0.0015 0.001878 0.05% Castro::post_regrid() 1 0.001568 0.001639 0.001773 0.05% Amr::InitAmr() 1 0.0002903 0.0003656 0.0005122 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.387e-05 0.0001943 0.000276 0.01% DistributionMapping::LeastUsedCPUs() 1 8.647e-06 0.0001879 0.0002683 0.01% Castro::enforce_consistent_e() 1 7.611e-05 8.679e-05 9.784e-05 0.00% FabArrayBase::getCPC() 41 6.321e-05 7.397e-05 8.155e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 5.119e-05 7.71e-05 0.00% FabArrayBase::CPC::define() 2 2.101e-05 2.606e-05 3.385e-05 0.00% Castro::enforce_speed_limit() 62 2.394e-05 2.765e-05 3.2e-05 0.00% Gravity::swapTimeLevels() 10 9.508e-06 1.288e-05 1.949e-05 0.00% Amr::initSubcycle() 1 8.438e-06 1.08e-05 1.649e-05 0.00% Gravity::set_mass_offset() 10 8.701e-06 1.067e-05 1.54e-05 0.00% Castro::FluxRegCrseInit 10 7.884e-06 8.959e-06 1.056e-05 0.00% Castro::create_source_corrector() 10 7.208e-06 8.317e-06 9.62e-06 0.00% Castro::retry_advance_ctu() 10 4.745e-06 5.313e-06 6.328e-06 0.00% Castro::FluxRegFineAdd() 10 1.767e-06 2.244e-06 2.719e-06 0.00% DistributionMapping::Distribute() 1 8.72e-07 1.3e-06 1.482e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 32 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-6-g5b7fa9867d02) finalized