MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-6-g5b7fa9867d02) initialized Starting run at 06:41:59 UTC on 2023-03-10. Successfully read inputs file ... Castro git describe: 23.03-2-g0304294be AMReX git describe: 23.03-6-g5b7fa9867 Microphysics git describe: 23.03-12-g1f07dde0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018407917 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.371369173 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.393185111 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.358001875 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330126307 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.367171536 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.31851179 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309206788 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.30895962 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.30934639 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.30994173 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010222223 seconds Ending run at 06:42:02 UTC on 2023-03-10. Run time = 3.642545088 Run time without initialization = 3.393333449 Average number of zones advanced per microsecond: 0.773 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.641 ... 3.642 ... 3.643 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3157 2.3585 2.4269 66.62% Gravity::make_radial_gravity() 21 0.3365 0.3518 0.3634 9.98% Castro::estTimeStep() 21 0.03051 0.1092 0.169 4.64% Castro::initData() 1 0.03847 0.09033 0.1589 4.36% Castro::do_advance_ctu() 10 0.0389 0.1092 0.1565 4.30% FabArray::ParallelCopy_finish() 41 0.03908 0.05257 0.08633 2.37% amrex::Copy() 193 0.05931 0.07085 0.07942 2.18% FabArray::setVal() 143 0.054 0.06293 0.07193 1.97% Castro::reset_internal_energy(Fab) 1008 0.04804 0.05065 0.0528 1.45% FabArray::ParallelCopy_nowait() 41 0.0373 0.04211 0.04455 1.22% Castro::normalize_species() 62 0.041 0.04272 0.04371 1.20% StateData::FillBoundary(geom) 41 0.03441 0.03661 0.04071 1.12% FillPatchIterator::Initialize 41 0.02946 0.03499 0.03826 1.05% Castro::construct_new_gravity_source() 10 0.0234 0.02641 0.03152 0.87% Gravity::interpolate_monopole_grav() 21 0.02788 0.02845 0.02925 0.80% Castro::computeTemp() 63 0.01923 0.02039 0.02155 0.59% Castro::initialize_do_advance() 10 0.01226 0.01742 0.01995 0.55% VisMF::Write(FabArray) 2 0.01342 0.01492 0.01902 0.52% FabArray::Saxpy() 20 0.01205 0.01353 0.01465 0.40% Castro::initialize_advance() 10 0.004523 0.009915 0.01331 0.37% MultiFab::contains_nan() 20 0.01089 0.01198 0.01303 0.36% Amr::writePlotFile() 2 0.007544 0.01135 0.01302 0.36% FabArray::setDomainBndry() 41 0.008882 0.01164 0.01281 0.35% Castro::construct_old_gravity_source() 10 0.007473 0.01033 0.01127 0.31% Castro::initMFs() 1 0.006734 0.007847 0.01037 0.28% StateData::define() 4 0.005741 0.006528 0.0084 0.23% Castro::construct_new_source() 50 0.005919 0.006139 0.006639 0.18% Castro::swap_state_time_levels() 10 0.003302 0.004958 0.006595 0.18% Castro::enforce_min_density() 62 0.00587 0.006098 0.006584 0.18% main() 1 0.004808 0.005825 0.006353 0.17% Gravity::get_new_grav_vector() 11 0.003143 0.003833 0.004419 0.12% Amr::coarseTimeStep() 10 0.001847 0.002869 0.003556 0.10% Gravity::get_old_grav_vector() 10 0.001744 0.002447 0.002872 0.08% Castro::buildMetrics() 1 0.001623 0.001857 0.002371 0.07% Castro::finalize_do_advance() 10 0.0005597 0.001438 0.001711 0.05% Castro::expand_state() 10 0.000672 0.0008303 0.001038 0.03% Amr::timeStep() 10 0.0001748 0.000241 0.0005178 0.01% Amr::InitAmr() 1 0.0002764 0.0003616 0.0005137 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002759 0.0003065 0.0003353 0.01% DistributionMapping::LeastUsedCPUs() 1 7.527e-06 0.0001717 0.0002664 0.01% Castro::clean_state() 62 0.0001404 0.0001573 0.0001706 0.00% Castro::enforce_consistent_e() 1 7.786e-05 0.0001009 0.0001395 0.00% Castro::finalize_advance() 10 8.023e-05 9.748e-05 0.0001169 0.00% StateDataPhysBCFunct::() 41 8.698e-05 9.336e-05 9.999e-05 0.00% Castro::Castro() 1 6.459e-05 7.583e-05 9.605e-05 0.00% Amr::FinalizeInit() 1 4.056e-06 1.617e-05 9.034e-05 0.00% FabArray::ParallelCopy() 41 7.22e-05 7.662e-05 8.614e-05 0.00% Amr::writeSmallPlotFile() 1 4.868e-05 6.853e-05 8.271e-05 0.00% Castro::construct_old_source() 50 6.096e-05 7.128e-05 8.223e-05 0.00% Castro::do_new_sources() 10 5.245e-05 5.923e-05 7.372e-05 0.00% FillPatchSingleLevel 41 6.381e-05 6.984e-05 7.179e-05 0.00% Castro::do_old_sources() 10 4.963e-05 6.011e-05 6.74e-05 0.00% Castro::subcycle_advance_ctu() 10 3.921e-05 4.881e-05 6.649e-05 0.00% Castro::construct_old_gravity() 10 2.869e-05 4.217e-05 6.057e-05 0.00% FabArrayBase::getCPC() 41 4.586e-05 5.142e-05 5.901e-05 0.00% Castro::construct_new_gravity() 10 3.539e-05 3.998e-05 5.26e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.412e-05 2.931e-05 5.159e-05 0.00% Castro::apply_source_to_state() 20 3.954e-05 4.514e-05 4.72e-05 0.00% Castro::advance() 10 3.956e-05 4.265e-05 4.633e-05 0.00% FabArrayBase::CPC::define() 2 2.195e-05 2.832e-05 3.71e-05 0.00% Castro::enforce_speed_limit() 62 2.459e-05 2.818e-05 3.281e-05 0.00% Castro::post_timestep() 10 1.646e-05 2.095e-05 2.771e-05 0.00% Castro::check_for_nan() 20 2.273e-05 2.451e-05 2.66e-05 0.00% Amr::defBaseLevel() 1 1.603e-05 2.135e-05 2.655e-05 0.00% Gravity::swapTimeLevels() 10 9.098e-06 1.251e-05 1.903e-05 0.00% Amr::initSubcycle() 1 8.837e-06 1.085e-05 1.608e-05 0.00% Castro::FluxRegCrseInit 10 8.357e-06 1.041e-05 1.244e-05 0.00% Gravity::set_mass_offset() 10 9.079e-06 1.044e-05 1.13e-05 0.00% Castro::computeNewDt() 9 7.072e-06 8.612e-06 9.523e-06 0.00% Castro::create_source_corrector() 10 6.426e-06 8.469e-06 9.408e-06 0.00% Amr::InitializeInit() 1 2.023e-06 4.146e-06 8.801e-06 0.00% Castro::post_regrid() 1 2.512e-06 3.537e-06 6.783e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.734e-06 4.966e-06 6.32e-06 0.00% Castro::retry_advance_ctu() 10 4.919e-06 5.327e-06 5.738e-06 0.00% Castro::post_init() 1 3.207e-06 4.157e-06 5.712e-06 0.00% Castro::computeInitialDt() 2 3.497e-06 4.543e-06 5.564e-06 0.00% Amr::init() 1 1.579e-06 2.331e-06 3.123e-06 0.00% Castro::FluxRegFineAdd() 10 2.078e-06 2.523e-06 2.934e-06 0.00% Amr::initialInit() 1 1.241e-06 1.796e-06 2.612e-06 0.00% DistributionMapping::Distribute() 1 9.52e-07 1.277e-06 1.88e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.641 3.642 3.643 100.00% Amr::coarseTimeStep() 10 3.377 3.377 3.377 92.70% Amr::timeStep() 10 3.363 3.363 3.364 92.36% Castro::advance() 10 3.346 3.347 3.347 91.89% Castro::subcycle_advance_ctu() 10 3.27 3.276 3.286 90.20% Castro::do_advance_ctu() 10 3.27 3.276 3.286 90.20% Castro::construct_ctu_hydro_source() 10 2.316 2.359 2.427 66.62% Gravity::make_radial_gravity() 21 0.352 0.3681 0.3779 10.37% Amr::init() 1 0.2485 0.2487 0.2488 6.83% Gravity::get_new_grav_vector() 11 0.2373 0.2385 0.2395 6.58% Amr::initialInit() 1 0.2299 0.2304 0.2308 6.34% Castro::construct_old_gravity() 10 0.202 0.2147 0.2232 6.13% Gravity::get_old_grav_vector() 10 0.2012 0.214 0.2226 6.11% Castro::construct_new_gravity() 10 0.1993 0.1999 0.2008 5.51% FillPatchIterator::Initialize 41 0.1684 0.1782 0.1977 5.43% Amr::InitializeInit() 1 0.05916 0.1132 0.1871 5.14% Amr::defBaseLevel() 1 0.05915 0.1132 0.1871 5.14% Castro::initialize_do_advance() 10 0.1635 0.1696 0.1751 4.81% Amr::FinalizeInit() 1 0.0436 0.1172 0.1711 4.70% Castro::estTimeStep() 21 0.03051 0.1092 0.169 4.64% Castro::initData() 1 0.04233 0.09464 0.164 4.50% FillPatchSingleLevel 41 0.1181 0.1316 0.1593 4.37% Castro::computeInitialDt() 2 0.003247 0.07731 0.1314 3.61% Castro::expand_state() 10 0.113 0.1215 0.131 3.60% FabArray::ParallelCopy() 41 0.08289 0.09483 0.1238 3.40% Castro::clean_state() 62 0.1146 0.1192 0.1237 3.40% FabArray::ParallelCopy_finish() 41 0.03908 0.05257 0.08633 2.37% amrex::Copy() 193 0.05931 0.07085 0.07942 2.18% Castro::do_new_sources() 10 0.05948 0.06528 0.07624 2.09% Castro::computeTemp() 63 0.06754 0.07135 0.07468 2.05% Castro::initialize_advance() 10 0.05697 0.06793 0.07371 2.02% FabArray::setVal() 143 0.054 0.06293 0.07193 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04832 0.05096 0.05313 1.46% Castro::reset_internal_energy(Fab) 1008 0.04804 0.05065 0.0528 1.45% Castro::do_old_sources() 10 0.03987 0.04515 0.04654 1.28% FabArray::ParallelCopy_nowait() 41 0.03739 0.04219 0.04463 1.23% Castro::normalize_species() 62 0.041 0.04272 0.04371 1.20% StateDataPhysBCFunct::() 41 0.03451 0.0367 0.04081 1.12% StateData::FillBoundary(geom) 41 0.03441 0.03661 0.04071 1.12% Castro::post_init() 1 0.03924 0.03959 0.03998 1.10% Castro::construct_new_source() 50 0.02941 0.03255 0.03816 1.05% Castro::construct_new_gravity_source() 10 0.0234 0.02641 0.03152 0.87% Gravity::interpolate_monopole_grav() 21 0.02788 0.02845 0.02925 0.80% Amr::writePlotFile() 2 0.02798 0.02858 0.02894 0.79% VisMF::Write(FabArray) 2 0.01342 0.01492 0.01902 0.52% Castro::post_timestep() 10 0.01565 0.01628 0.01686 0.46% Castro::apply_source_to_state() 20 0.01209 0.01358 0.0147 0.40% FabArray::Saxpy() 20 0.01205 0.01353 0.01465 0.40% Castro::Castro() 1 0.01065 0.0118 0.0146 0.40% Castro::check_for_nan() 20 0.01092 0.01201 0.01305 0.36% MultiFab::contains_nan() 20 0.01089 0.01198 0.01303 0.36% FabArray::setDomainBndry() 41 0.008882 0.01164 0.01281 0.35% Castro::construct_old_source() 50 0.007536 0.0104 0.01135 0.31% Castro::construct_old_gravity_source() 10 0.007473 0.01033 0.01127 0.31% Castro::initMFs() 1 0.006734 0.007847 0.01037 0.28% Castro::computeNewDt() 9 0.00902 0.009027 0.009035 0.25% AmrLevel::AmrLevel(dm) 1 0.005765 0.006558 0.008451 0.23% StateData::define() 4 0.005741 0.006528 0.0084 0.23% Castro::swap_state_time_levels() 10 0.003302 0.004958 0.006595 0.18% Castro::enforce_min_density() 62 0.00587 0.006098 0.006584 0.18% Castro::finalize_advance() 10 0.002878 0.003158 0.003486 0.10% Castro::post_regrid() 1 0.001567 0.002002 0.002847 0.08% Castro::buildMetrics() 1 0.001742 0.002002 0.002593 0.07% Castro::finalize_do_advance() 10 0.0005597 0.001438 0.001711 0.05% Amr::InitAmr() 1 0.000286 0.0003725 0.0005287 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.346e-05 0.0001779 0.0002742 0.01% DistributionMapping::LeastUsedCPUs() 1 7.527e-06 0.0001717 0.0002664 0.01% Castro::enforce_consistent_e() 1 7.786e-05 0.0001009 0.0001395 0.00% FabArrayBase::getCPC() 41 7.143e-05 7.974e-05 8.686e-05 0.00% Amr::writeSmallPlotFile() 1 4.868e-05 6.853e-05 8.271e-05 0.00% FabArrayBase::CPC::define() 2 2.195e-05 2.832e-05 3.71e-05 0.00% Castro::enforce_speed_limit() 62 2.459e-05 2.818e-05 3.281e-05 0.00% Gravity::swapTimeLevels() 10 9.098e-06 1.251e-05 1.903e-05 0.00% Amr::initSubcycle() 1 8.837e-06 1.085e-05 1.608e-05 0.00% Castro::FluxRegCrseInit 10 8.357e-06 1.041e-05 1.244e-05 0.00% Gravity::set_mass_offset() 10 9.079e-06 1.044e-05 1.13e-05 0.00% Castro::create_source_corrector() 10 6.426e-06 8.469e-06 9.408e-06 0.00% Castro::retry_advance_ctu() 10 4.919e-06 5.327e-06 5.738e-06 0.00% Castro::FluxRegFineAdd() 10 2.078e-06 2.523e-06 2.934e-06 0.00% DistributionMapping::Distribute() 1 9.52e-07 1.277e-06 1.88e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 36 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-6-g5b7fa9867d02) finalized