MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-7-g6d30e83c944e) initialized Starting run at 05:42:43 UTC on 2023-03-13. Successfully read inputs file ... Castro git describe: 23.03-2-g0304294be AMReX git describe: 23.03-7-g6d30e83c9 Microphysics git describe: 23.03-12-g1f07dde0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015812725 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.374229692 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338351587 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.368015249 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327354617 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355717841 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332070575 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310119818 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311311508 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309831107 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310758575 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010415648 seconds Ending run at 05:42:46 UTC on 2023-03-13. Run time = 3.537034689 Run time without initialization = 3.355282588 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.536 ... 3.537 ... 3.537 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2765 2.3325 2.3864 67.47% Gravity::make_radial_gravity() 21 0.3125 0.3213 0.3286 9.29% Castro::do_advance_ctu() 10 0.05972 0.1157 0.1732 4.90% Castro::initData() 1 0.04008 0.07815 0.1147 3.24% Castro::estTimeStep() 21 0.02205 0.06674 0.1029 2.91% FabArray::setVal() 143 0.06603 0.07314 0.0831 2.35% amrex::Copy() 193 0.06611 0.07213 0.07904 2.23% FabArray::ParallelCopy_finish() 41 0.03954 0.04799 0.05843 1.65% Castro::reset_internal_energy(Fab) 1008 0.04842 0.04992 0.05234 1.48% Castro::normalize_species() 62 0.04134 0.04218 0.04339 1.23% FabArray::ParallelCopy_nowait() 41 0.03697 0.04132 0.0429 1.21% StateData::FillBoundary(geom) 41 0.03304 0.03599 0.03864 1.09% FillPatchIterator::Initialize 41 0.02962 0.03329 0.03604 1.02% Castro::construct_new_gravity_source() 10 0.02353 0.02639 0.03087 0.87% Gravity::interpolate_monopole_grav() 21 0.02822 0.02857 0.02888 0.82% Castro::computeTemp() 63 0.01802 0.01948 0.02027 0.57% Castro::initialize_do_advance() 10 0.01274 0.01707 0.01977 0.56% VisMF::Write(FabArray) 2 0.0132 0.0138 0.01663 0.47% FabArray::Saxpy() 20 0.0134 0.01423 0.01484 0.42% Castro::initialize_advance() 10 0.009759 0.01211 0.01468 0.42% FabArray::setDomainBndry() 41 0.008461 0.01118 0.01299 0.37% MultiFab::contains_nan() 20 0.01082 0.01125 0.01212 0.34% Castro::construct_old_gravity_source() 10 0.007494 0.01021 0.01078 0.30% Amr::writePlotFile() 2 0.006829 0.009738 0.01031 0.29% Castro::initMFs() 1 0.006924 0.007388 0.008429 0.24% Castro::enforce_min_density() 62 0.005814 0.006126 0.006623 0.19% Castro::construct_new_source() 50 0.006044 0.006369 0.006577 0.19% StateData::define() 4 0.005746 0.006052 0.006538 0.18% main() 1 0.005296 0.005869 0.006269 0.18% Castro::swap_state_time_levels() 10 0.003544 0.004791 0.0053 0.15% Gravity::get_new_grav_vector() 11 0.003127 0.003735 0.005112 0.14% Amr::coarseTimeStep() 10 0.002047 0.00297 0.003847 0.11% Gravity::get_old_grav_vector() 10 0.001844 0.002378 0.002778 0.08% Castro::buildMetrics() 1 0.001668 0.001765 0.001914 0.05% Castro::finalize_do_advance() 10 0.0006436 0.001493 0.001823 0.05% Castro::expand_state() 10 0.0008093 0.0009572 0.001074 0.03% Amr::InitAmr() 1 0.0002829 0.0003206 0.0004709 0.01% Amr::timeStep() 10 0.0001697 0.0002439 0.0004229 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002627 0.0002844 0.0003204 0.01% Castro::clean_state() 62 0.0001385 0.0001757 0.0002417 0.01% DistributionMapping::LeastUsedCPUs() 1 7.558e-06 0.0001671 0.000198 0.01% Castro::Castro() 1 5.902e-05 8.152e-05 0.0001384 0.00% Castro::finalize_advance() 10 8.217e-05 9.662e-05 0.0001068 0.00% StateDataPhysBCFunct::() 41 8.51e-05 9.091e-05 0.0001005 0.00% Castro::enforce_consistent_e() 1 7.227e-05 8.804e-05 9.672e-05 0.00% Castro::construct_old_source() 50 5.49e-05 7.111e-05 8.653e-05 0.00% Castro::subcycle_advance_ctu() 10 3.946e-05 4.974e-05 8.135e-05 0.00% FabArray::ParallelCopy() 41 6.557e-05 7.206e-05 7.992e-05 0.00% Amr::FinalizeInit() 1 3.72e-06 1.509e-05 7.989e-05 0.00% FillPatchSingleLevel 41 6.01e-05 6.86e-05 7.666e-05 0.00% Amr::writeSmallPlotFile() 1 2.58e-05 5.038e-05 7.105e-05 0.00% FabArrayBase::getCPC() 41 4.557e-05 5.478e-05 7.078e-05 0.00% Castro::do_new_sources() 10 5.097e-05 6.229e-05 7.028e-05 0.00% Castro::do_old_sources() 10 5.412e-05 6.007e-05 6.757e-05 0.00% Castro::apply_source_to_state() 20 4.065e-05 5.029e-05 5.911e-05 0.00% Castro::advance() 10 3.834e-05 4.622e-05 5.483e-05 0.00% Castro::construct_new_gravity() 10 3.239e-05 4.012e-05 4.846e-05 0.00% Castro::construct_old_gravity() 10 3.678e-05 3.934e-05 4.314e-05 0.00% FabArrayBase::CPC::define() 2 2.029e-05 2.568e-05 3.519e-05 0.00% Castro::enforce_speed_limit() 62 2.411e-05 2.747e-05 3.287e-05 0.00% Castro::check_for_nan() 20 2.254e-05 2.501e-05 2.978e-05 0.00% Amr::defBaseLevel() 1 1.638e-05 1.981e-05 2.806e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.509e-05 2.018e-05 2.417e-05 0.00% Castro::post_timestep() 10 1.485e-05 1.743e-05 2.011e-05 0.00% Gravity::swapTimeLevels() 10 1.052e-05 1.207e-05 1.438e-05 0.00% Gravity::set_mass_offset() 10 1.008e-05 1.097e-05 1.234e-05 0.00% Amr::initSubcycle() 1 8.855e-06 9.649e-06 1.045e-05 0.00% Castro::FluxRegCrseInit 10 7.764e-06 9.077e-06 1.023e-05 0.00% Castro::create_source_corrector() 10 7.441e-06 9.239e-06 1.021e-05 0.00% Castro::computeNewDt() 9 7.804e-06 8.521e-06 8.917e-06 0.00% Castro::retry_advance_ctu() 10 4.367e-06 5.712e-06 7.19e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.728e-06 4.89e-06 6.245e-06 0.00% Amr::InitializeInit() 1 1.88e-06 2.591e-06 5.295e-06 0.00% Castro::computeInitialDt() 2 3.032e-06 3.893e-06 5.103e-06 0.00% Castro::post_init() 1 2.976e-06 3.66e-06 4.394e-06 0.00% Castro::post_regrid() 1 2.006e-06 3.216e-06 4.082e-06 0.00% Castro::FluxRegFineAdd() 10 1.885e-06 2.55e-06 3.281e-06 0.00% Amr::init() 1 1.772e-06 2.132e-06 2.535e-06 0.00% Amr::initialInit() 1 1.077e-06 1.547e-06 2.062e-06 0.00% DistributionMapping::Distribute() 1 9.29e-07 1.176e-06 1.491e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.536 3.537 3.537 100.00% Amr::coarseTimeStep() 10 3.339 3.339 3.339 94.39% Amr::timeStep() 10 3.325 3.326 3.327 94.06% Castro::advance() 10 3.309 3.31 3.31 93.59% Castro::subcycle_advance_ctu() 10 3.22 3.229 3.235 91.45% Castro::do_advance_ctu() 10 3.22 3.229 3.235 91.45% Castro::construct_ctu_hydro_source() 10 2.276 2.333 2.386 67.47% Gravity::make_radial_gravity() 21 0.3286 0.3378 0.3461 9.78% Gravity::get_new_grav_vector() 11 0.2175 0.2224 0.2247 6.35% Castro::construct_old_gravity() 10 0.1918 0.1984 0.2062 5.83% Gravity::get_old_grav_vector() 10 0.1911 0.1977 0.2055 5.81% Castro::construct_new_gravity() 10 0.1932 0.1974 0.1992 5.63% Amr::init() 1 0.1811 0.1813 0.1813 5.13% FillPatchIterator::Initialize 41 0.1575 0.1701 0.1775 5.02% Castro::initialize_do_advance() 10 0.15 0.1641 0.1726 4.88% Amr::initialInit() 1 0.1651 0.1653 0.1654 4.68% Amr::InitializeInit() 1 0.06209 0.09995 0.1362 3.85% Amr::defBaseLevel() 1 0.06208 0.09995 0.1362 3.85% FillPatchSingleLevel 41 0.1175 0.1256 0.1303 3.68% Castro::expand_state() 10 0.1066 0.1171 0.126 3.56% Castro::clean_state() 62 0.1138 0.1172 0.1218 3.44% Castro::initData() 1 0.04362 0.08217 0.119 3.36% Amr::FinalizeInit() 1 0.02911 0.0653 0.1031 2.91% Castro::estTimeStep() 21 0.02205 0.06674 0.1029 2.91% FabArray::ParallelCopy() 41 0.08198 0.08947 0.09558 2.70% Castro::initialize_advance() 10 0.07191 0.07728 0.08536 2.41% FabArray::setVal() 143 0.06603 0.07314 0.0831 2.35% amrex::Copy() 193 0.06611 0.07213 0.07904 2.23% Castro::do_new_sources() 10 0.06068 0.06698 0.07634 2.16% Castro::computeInitialDt() 2 0.002323 0.03858 0.07629 2.16% Castro::computeTemp() 63 0.06736 0.06969 0.07269 2.06% FabArray::ParallelCopy_finish() 41 0.03954 0.04799 0.05843 1.65% Castro::reset_internal_energy(MultiFab) 63 0.0487 0.05021 0.05262 1.49% Castro::reset_internal_energy(Fab) 1008 0.04842 0.04992 0.05234 1.48% Castro::do_old_sources() 10 0.04203 0.04532 0.04612 1.30% Castro::normalize_species() 62 0.04134 0.04218 0.04339 1.23% FabArray::ParallelCopy_nowait() 41 0.03707 0.04141 0.04297 1.21% StateDataPhysBCFunct::() 41 0.03313 0.03608 0.03874 1.10% StateData::FillBoundary(geom) 41 0.03304 0.03599 0.03864 1.09% Castro::construct_new_source() 50 0.02987 0.03276 0.03745 1.06% Castro::construct_new_gravity_source() 10 0.02353 0.02639 0.03087 0.87% Gravity::interpolate_monopole_grav() 21 0.02822 0.02857 0.02888 0.82% Amr::writePlotFile() 2 0.02643 0.02654 0.02669 0.75% Castro::post_init() 1 0.02588 0.0261 0.02637 0.75% VisMF::Write(FabArray) 2 0.0132 0.0138 0.01663 0.47% Castro::post_timestep() 10 0.01541 0.01599 0.01649 0.47% Castro::apply_source_to_state() 20 0.01345 0.01428 0.01489 0.42% FabArray::Saxpy() 20 0.0134 0.01423 0.01484 0.42% FabArray::setDomainBndry() 41 0.008461 0.01118 0.01299 0.37% Castro::Castro() 1 0.01101 0.01152 0.0124 0.35% Castro::check_for_nan() 20 0.01085 0.01128 0.01215 0.34% MultiFab::contains_nan() 20 0.01082 0.01125 0.01212 0.34% Castro::construct_old_source() 50 0.007558 0.01029 0.01085 0.31% Castro::construct_old_gravity_source() 10 0.007494 0.01021 0.01078 0.30% Castro::computeNewDt() 9 0.008612 0.008622 0.008634 0.24% Castro::initMFs() 1 0.006924 0.007388 0.008429 0.24% Castro::enforce_min_density() 62 0.005814 0.006126 0.006623 0.19% AmrLevel::AmrLevel(dm) 1 0.005768 0.006072 0.006556 0.19% StateData::define() 4 0.005746 0.006052 0.006538 0.18% Castro::swap_state_time_levels() 10 0.003544 0.004791 0.0053 0.15% Castro::finalize_advance() 10 0.002941 0.003547 0.004601 0.13% Castro::buildMetrics() 1 0.001794 0.001908 0.002077 0.06% Castro::post_regrid() 1 0.001526 0.001676 0.00197 0.06% Castro::finalize_do_advance() 10 0.0006436 0.001493 0.001823 0.05% Amr::InitAmr() 1 0.0002923 0.0003303 0.0004814 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.267e-05 0.0001731 0.0002057 0.01% DistributionMapping::LeastUsedCPUs() 1 7.558e-06 0.0001671 0.000198 0.01% FabArrayBase::getCPC() 41 7.093e-05 8.046e-05 9.675e-05 0.00% Castro::enforce_consistent_e() 1 7.227e-05 8.804e-05 9.672e-05 0.00% Amr::writeSmallPlotFile() 1 2.58e-05 5.038e-05 7.105e-05 0.00% FabArrayBase::CPC::define() 2 2.029e-05 2.568e-05 3.519e-05 0.00% Castro::enforce_speed_limit() 62 2.411e-05 2.747e-05 3.287e-05 0.00% Gravity::swapTimeLevels() 10 1.052e-05 1.207e-05 1.438e-05 0.00% Gravity::set_mass_offset() 10 1.008e-05 1.097e-05 1.234e-05 0.00% Amr::initSubcycle() 1 8.855e-06 9.649e-06 1.045e-05 0.00% Castro::FluxRegCrseInit 10 7.764e-06 9.077e-06 1.023e-05 0.00% Castro::create_source_corrector() 10 7.441e-06 9.239e-06 1.021e-05 0.00% Castro::retry_advance_ctu() 10 4.367e-06 5.712e-06 7.19e-06 0.00% Castro::FluxRegFineAdd() 10 1.885e-06 2.55e-06 3.281e-06 0.00% DistributionMapping::Distribute() 1 9.29e-07 1.176e-06 1.491e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 34 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-7-g6d30e83c944e) finalized