MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-8-gaaab804f1438) initialized Starting run at 00:24:01 UTC on 2023-03-15. Successfully read inputs file ... Castro git describe: 23.03-58-g877ad930c AMReX git describe: 23.03-8-gaaab804f1 Microphysics git describe: 23.03-13-ga480b6a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016798863 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362211496 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.338687199 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329409365 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328841998 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.34826705 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.352229977 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31461506 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313221748 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31420395 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311480783 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010589393 seconds Ending run at 00:24:05 UTC on 2023-03-15. Run time = 3.512713682 Run time without initialization = 3.331237395 Average number of zones advanced per microsecond: 0.787 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.511 ... 3.512 ... 3.513 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2988 2.3339 2.3740 67.58% Gravity::make_radial_gravity() 21 0.3133 0.3209 0.3298 9.39% Castro::estTimeStep() 21 0.0222 0.0737 0.1131 3.22% Castro::initData() 1 0.03895 0.07764 0.1126 3.20% Castro::do_advance_ctu() 10 0.0267 0.0698 0.1047 2.98% FabArray::setVal() 143 0.06376 0.07246 0.08475 2.41% amrex::Copy() 193 0.06565 0.07315 0.08039 2.29% FabArray::ParallelCopy_finish() 41 0.03899 0.05638 0.07991 2.27% Castro::reset_internal_energy(Fab) 1008 0.0472 0.04982 0.05292 1.51% Castro::normalize_species() 62 0.04131 0.04264 0.04462 1.27% FabArray::ParallelCopy_nowait() 41 0.03669 0.04088 0.04276 1.22% FillPatchIterator::Initialize 41 0.0291 0.03349 0.03919 1.12% StateData::FillBoundary(geom) 41 0.03166 0.03509 0.03741 1.06% Castro::construct_new_gravity_source() 10 0.02266 0.02567 0.03341 0.95% Gravity::interpolate_monopole_grav() 21 0.02789 0.02849 0.02926 0.83% Castro::initialize_do_advance() 10 0.0126 0.01823 0.02173 0.62% Castro::computeTemp() 63 0.01829 0.01944 0.02055 0.59% VisMF::Write(FabArray) 2 0.0139 0.01468 0.01752 0.50% FabArray::Saxpy() 20 0.012 0.01397 0.01474 0.42% Castro::initialize_advance() 10 0.008307 0.01123 0.01413 0.40% MultiFab::contains_nan() 20 0.01155 0.01214 0.01273 0.36% FabArray::setDomainBndry() 41 0.008993 0.01112 0.01265 0.36% Amr::writePlotFile() 2 0.007297 0.009874 0.01118 0.32% Castro::construct_old_gravity_source() 10 0.007189 0.01012 0.01088 0.31% Amr::coarseTimeStep() 10 0.001537 0.007543 0.01005 0.29% Castro::initMFs() 1 0.006668 0.007402 0.00888 0.25% Castro::construct_new_source() 50 0.005745 0.00658 0.008856 0.25% StateData::define() 4 0.005591 0.006397 0.008267 0.24% main() 1 0.005176 0.006111 0.006788 0.19% Castro::enforce_min_density() 62 0.005801 0.006153 0.006613 0.19% Castro::swap_state_time_levels() 10 0.003311 0.004433 0.004682 0.13% Gravity::get_new_grav_vector() 11 0.002961 0.003533 0.004072 0.12% Gravity::get_old_grav_vector() 10 0.001837 0.002388 0.002806 0.08% Castro::buildMetrics() 1 0.001585 0.00182 0.002374 0.07% Castro::finalize_do_advance() 10 0.0007189 0.001494 0.001806 0.05% Castro::expand_state() 10 0.0007753 0.0008892 0.001052 0.03% Amr::timeStep() 10 0.0001877 0.0002529 0.00052 0.01% Amr::InitAmr() 1 0.000281 0.0003686 0.0005071 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000288 0.0003087 0.0003203 0.01% DistributionMapping::LeastUsedCPUs() 1 6.453e-06 0.000172 0.0002589 0.01% Castro::clean_state() 62 0.0001408 0.0001528 0.0001621 0.00% StateDataPhysBCFunct::() 41 8.369e-05 0.0001051 0.0001242 0.00% Castro::finalize_advance() 10 8.971e-05 0.0001066 0.000117 0.00% Castro::Castro() 1 5.34e-05 6.665e-05 9.325e-05 0.00% Castro::construct_old_source() 50 4.823e-05 6.912e-05 8.615e-05 0.00% Castro::enforce_consistent_e() 1 7.382e-05 8.201e-05 8.615e-05 0.00% FabArray::ParallelCopy() 41 6.25e-05 7.158e-05 7.714e-05 0.00% Castro::do_old_sources() 10 5.618e-05 6.397e-05 7.637e-05 0.00% Amr::writeSmallPlotFile() 1 2.622e-05 6.596e-05 7.584e-05 0.00% Castro::do_new_sources() 10 5.785e-05 6.656e-05 7.518e-05 0.00% Castro::subcycle_advance_ctu() 10 4.079e-05 5.302e-05 7.436e-05 0.00% FillPatchSingleLevel 41 5.799e-05 6.393e-05 7.256e-05 0.00% Amr::FinalizeInit() 1 3.485e-06 1.371e-05 7.102e-05 0.00% Castro::apply_source_to_state() 20 3.866e-05 4.667e-05 5.727e-05 0.00% FabArrayBase::getCPC() 41 3.944e-05 4.69e-05 5.685e-05 0.00% Castro::construct_new_gravity() 10 3.297e-05 4.03e-05 5.41e-05 0.00% Castro::advance() 10 3.573e-05 4.184e-05 5.151e-05 0.00% Castro::enforce_speed_limit() 62 2.69e-05 3.226e-05 4.655e-05 0.00% Castro::construct_old_gravity() 10 3.695e-05 3.876e-05 4.172e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.569e-05 2.925e-05 3.471e-05 0.00% FabArrayBase::CPC::define() 2 2.027e-05 2.533e-05 3.259e-05 0.00% Amr::defBaseLevel() 1 1.948e-05 2.667e-05 3.145e-05 0.00% Castro::post_timestep() 10 1.703e-05 2.192e-05 2.586e-05 0.00% Castro::check_for_nan() 20 2.015e-05 2.237e-05 2.465e-05 0.00% Castro::retry_advance_ctu() 10 5.588e-06 1.22e-05 2.155e-05 0.00% Castro::FluxRegCrseInit 10 8.305e-06 1.36e-05 1.768e-05 0.00% Amr::initSubcycle() 1 8.926e-06 1.128e-05 1.622e-05 0.00% Gravity::swapTimeLevels() 10 9.394e-06 1.058e-05 1.305e-05 0.00% Gravity::set_mass_offset() 10 9.476e-06 1.055e-05 1.256e-05 0.00% Castro::computeNewDt() 9 8.109e-06 8.875e-06 9.542e-06 0.00% Castro::post_init() 1 2.711e-06 4.016e-06 9.455e-06 0.00% Castro::create_source_corrector() 10 7.59e-06 8.486e-06 9.213e-06 0.00% Amr::initialInit() 1 1.358e-06 3.285e-06 8.377e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.557e-06 4.663e-06 6.225e-06 0.00% Amr::InitializeInit() 1 1.877e-06 2.857e-06 5.473e-06 0.00% Castro::computeInitialDt() 2 3.32e-06 3.855e-06 4.969e-06 0.00% Castro::post_regrid() 1 1.742e-06 2.718e-06 3.628e-06 0.00% Castro::FluxRegFineAdd() 10 2.088e-06 2.422e-06 2.896e-06 0.00% Amr::init() 1 1.509e-06 2.075e-06 2.347e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.176e-06 1.784e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.511 3.512 3.513 100.00% Amr::coarseTimeStep() 10 3.314 3.314 3.314 94.34% Amr::timeStep() 10 3.294 3.297 3.303 94.02% Castro::advance() 10 3.278 3.279 3.281 93.40% Castro::subcycle_advance_ctu() 10 3.191 3.199 3.207 91.30% Castro::do_advance_ctu() 10 3.191 3.199 3.207 91.30% Castro::construct_ctu_hydro_source() 10 2.299 2.334 2.374 67.58% Gravity::make_radial_gravity() 21 0.3297 0.3378 0.3444 9.80% Gravity::get_new_grav_vector() 11 0.2175 0.2193 0.2203 6.27% Castro::construct_old_gravity() 10 0.1962 0.2019 0.2068 5.89% Gravity::get_old_grav_vector() 10 0.1955 0.201 0.2062 5.87% Castro::construct_new_gravity() 10 0.1932 0.1944 0.1952 5.56% FillPatchIterator::Initialize 41 0.1535 0.1773 0.1916 5.45% Amr::init() 1 0.1807 0.1809 0.181 5.15% Castro::initialize_do_advance() 10 0.1576 0.1707 0.1808 5.15% Amr::initialInit() 1 0.1638 0.1642 0.1649 4.69% FillPatchSingleLevel 41 0.1148 0.1327 0.1534 4.37% Amr::InitializeInit() 1 0.06316 0.09923 0.1357 3.86% Amr::defBaseLevel() 1 0.06316 0.09922 0.1357 3.86% Castro::expand_state() 10 0.1065 0.1224 0.1332 3.79% Castro::clean_state() 62 0.1129 0.1176 0.1243 3.54% FabArray::ParallelCopy() 41 0.08005 0.0974 0.1168 3.32% Castro::initData() 1 0.04253 0.0814 0.1164 3.31% Castro::estTimeStep() 21 0.0222 0.0737 0.1131 3.22% Amr::FinalizeInit() 1 0.02857 0.06501 0.1014 2.89% FabArray::setVal() 143 0.06376 0.07246 0.08475 2.41% Castro::initialize_advance() 10 0.06764 0.07596 0.0844 2.40% amrex::Copy() 193 0.06565 0.07315 0.08039 2.29% FabArray::ParallelCopy_finish() 41 0.03899 0.05638 0.07991 2.27% Castro::do_new_sources() 10 0.06084 0.06534 0.07926 2.26% Castro::computeInitialDt() 2 0.002194 0.03888 0.07477 2.13% Castro::computeTemp() 63 0.06577 0.06957 0.07378 2.10% Castro::reset_internal_energy(MultiFab) 63 0.04748 0.05012 0.05323 1.52% Castro::reset_internal_energy(Fab) 1008 0.0472 0.04982 0.05292 1.51% Castro::do_old_sources() 10 0.04028 0.04621 0.05076 1.44% Castro::normalize_species() 62 0.04131 0.04264 0.04462 1.27% FabArray::ParallelCopy_nowait() 41 0.03677 0.04095 0.04283 1.22% Castro::construct_new_source() 50 0.02841 0.03225 0.04226 1.20% StateDataPhysBCFunct::() 41 0.03177 0.0352 0.03751 1.07% StateData::FillBoundary(geom) 41 0.03166 0.03509 0.03741 1.06% Castro::construct_new_gravity_source() 10 0.02266 0.02567 0.03341 0.95% Gravity::interpolate_monopole_grav() 21 0.02789 0.02849 0.02926 0.83% Amr::writePlotFile() 2 0.02679 0.02734 0.02786 0.79% Castro::post_init() 1 0.02529 0.0258 0.02635 0.75% Castro::post_timestep() 10 0.01576 0.01716 0.02181 0.62% VisMF::Write(FabArray) 2 0.0139 0.01468 0.01752 0.50% Castro::apply_source_to_state() 20 0.01205 0.01402 0.01479 0.42% FabArray::Saxpy() 20 0.012 0.01397 0.01474 0.42% Castro::check_for_nan() 20 0.01157 0.01217 0.01275 0.36% MultiFab::contains_nan() 20 0.01155 0.01214 0.01273 0.36% FabArray::setDomainBndry() 41 0.008993 0.01112 0.01265 0.36% Castro::Castro() 1 0.01051 0.01119 0.01264 0.36% Castro::construct_old_source() 50 0.007237 0.01019 0.01096 0.31% Castro::construct_old_gravity_source() 10 0.007189 0.01012 0.01088 0.31% Castro::initMFs() 1 0.006668 0.007402 0.00888 0.25% Castro::computeNewDt() 9 0.008434 0.008508 0.008523 0.24% AmrLevel::AmrLevel(dm) 1 0.005619 0.006426 0.008299 0.24% StateData::define() 4 0.005591 0.006397 0.008267 0.24% Castro::enforce_min_density() 62 0.005801 0.006153 0.006613 0.19% Castro::finalize_advance() 10 0.002914 0.00418 0.005646 0.16% Castro::swap_state_time_levels() 10 0.003311 0.004433 0.004682 0.13% Castro::buildMetrics() 1 0.001697 0.001964 0.002591 0.07% Castro::finalize_do_advance() 10 0.0007189 0.001494 0.001806 0.05% Castro::post_regrid() 1 0.001517 0.001572 0.001663 0.05% Amr::InitAmr() 1 0.0002909 0.0003799 0.0005225 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.157e-05 0.0001779 0.0002664 0.01% DistributionMapping::LeastUsedCPUs() 1 6.453e-06 0.000172 0.0002589 0.01% Castro::enforce_consistent_e() 1 7.382e-05 8.201e-05 8.615e-05 0.00% FabArrayBase::getCPC() 41 6.244e-05 7.223e-05 8.348e-05 0.00% Amr::writeSmallPlotFile() 1 2.622e-05 6.596e-05 7.584e-05 0.00% Castro::enforce_speed_limit() 62 2.69e-05 3.226e-05 4.655e-05 0.00% FabArrayBase::CPC::define() 2 2.027e-05 2.533e-05 3.259e-05 0.00% Castro::retry_advance_ctu() 10 5.588e-06 1.22e-05 2.155e-05 0.00% Castro::FluxRegCrseInit 10 8.305e-06 1.36e-05 1.768e-05 0.00% Amr::initSubcycle() 1 8.926e-06 1.128e-05 1.622e-05 0.00% Gravity::swapTimeLevels() 10 9.394e-06 1.058e-05 1.305e-05 0.00% Gravity::set_mass_offset() 10 9.476e-06 1.055e-05 1.256e-05 0.00% Castro::create_source_corrector() 10 7.59e-06 8.486e-06 9.213e-06 0.00% Castro::FluxRegFineAdd() 10 2.088e-06 2.422e-06 2.896e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.176e-06 1.784e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-8-gaaab804f1438) finalized