MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-8-gaaab804f1438) initialized Starting run at 05:42:11 UTC on 2023-03-14. Successfully read inputs file ... Castro git describe: 23.03-2-g0304294be AMReX git describe: 23.03-8-gaaab804f1 Microphysics git describe: 23.03-12-g1f07dde0 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016196099 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360334279 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361359855 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.342215558 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339976326 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.364582705 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334531395 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.337339713 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315845982 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.321935668 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315685199 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010163808 seconds Ending run at 05:42:14 UTC on 2023-03-14. Run time = 3.597660735 Run time without initialization = 3.411498152 Average number of zones advanced per microsecond: 0.768 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.596 ... 3.597 ... 3.598 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2278 2.3680 2.4266 67.45% Gravity::make_radial_gravity() 21 0.3228 0.3326 0.3475 9.66% Castro::do_advance_ctu() 10 0.05101 0.1116 0.2559 7.11% Castro::initData() 1 0.04149 0.07998 0.1174 3.26% Castro::estTimeStep() 21 0.0261 0.06819 0.1031 2.87% amrex::Copy() 193 0.06771 0.0755 0.08257 2.30% FabArray::setVal() 143 0.06622 0.07389 0.08191 2.28% FabArray::ParallelCopy_finish() 41 0.03619 0.04878 0.05835 1.62% Castro::reset_internal_energy(Fab) 1008 0.04954 0.05069 0.05157 1.43% FabArray::ParallelCopy_nowait() 41 0.0392 0.0428 0.04438 1.23% Castro::normalize_species() 62 0.04184 0.04241 0.04291 1.19% StateData::FillBoundary(geom) 41 0.03214 0.0368 0.04035 1.12% FillPatchIterator::Initialize 41 0.0285 0.03485 0.03732 1.04% Castro::construct_new_gravity_source() 10 0.02426 0.02685 0.02996 0.83% Gravity::interpolate_monopole_grav() 21 0.0278 0.02919 0.0298 0.83% Castro::computeTemp() 63 0.01925 0.02011 0.02106 0.59% Castro::initialize_do_advance() 10 0.01335 0.01767 0.01994 0.55% VisMF::Write(FabArray) 2 0.01308 0.01377 0.01655 0.46% FabArray::Saxpy() 20 0.01423 0.01477 0.01526 0.42% Castro::initialize_advance() 10 0.009599 0.01191 0.0144 0.40% FabArray::setDomainBndry() 41 0.008757 0.01194 0.01296 0.36% MultiFab::contains_nan() 20 0.01021 0.01091 0.01182 0.33% Castro::construct_old_gravity_source() 10 0.008912 0.0107 0.01126 0.31% Amr::writePlotFile() 2 0.007096 0.00977 0.01048 0.29% Castro::initMFs() 1 0.007117 0.007573 0.008463 0.24% main() 1 0.004939 0.006244 0.006772 0.19% Castro::construct_new_source() 50 0.006268 0.006476 0.006596 0.18% StateData::define() 4 0.00583 0.006106 0.006544 0.18% Castro::enforce_min_density() 62 0.00587 0.006154 0.0065 0.18% Gravity::get_new_grav_vector() 11 0.003139 0.004212 0.005761 0.16% Castro::swap_state_time_levels() 10 0.003599 0.004811 0.005019 0.14% Amr::coarseTimeStep() 10 0.001612 0.00282 0.003714 0.10% Gravity::get_old_grav_vector() 10 0.001777 0.002552 0.003013 0.08% Castro::finalize_do_advance() 10 0.0009886 0.001684 0.002095 0.06% Castro::buildMetrics() 1 0.001652 0.00174 0.001879 0.05% Castro::expand_state() 10 0.0006044 0.0008353 0.001049 0.03% Amr::InitAmr() 1 0.0002769 0.0003074 0.000412 0.01% Amr::timeStep() 10 0.0001778 0.0002305 0.0003902 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002774 0.0002883 0.0003038 0.01% Castro::clean_state() 62 0.0001425 0.0001554 0.0001778 0.00% DistributionMapping::LeastUsedCPUs() 1 7.161e-06 0.0001092 0.0001335 0.00% Castro::finalize_advance() 10 8.92e-05 9.892e-05 0.0001072 0.00% Castro::enforce_consistent_e() 1 8.457e-05 9.048e-05 0.0001029 0.00% StateDataPhysBCFunct::() 41 8.323e-05 9.207e-05 0.0001011 0.00% Castro::construct_old_source() 50 5.776e-05 7.228e-05 9.007e-05 0.00% Castro::Castro() 1 5.975e-05 6.821e-05 8.422e-05 0.00% Amr::FinalizeInit() 1 4.328e-06 1.476e-05 8.376e-05 0.00% FabArray::ParallelCopy() 41 6.657e-05 7.355e-05 8.098e-05 0.00% FillPatchSingleLevel 41 6.243e-05 6.912e-05 7.519e-05 0.00% Amr::writeSmallPlotFile() 1 2.535e-05 4.942e-05 7.24e-05 0.00% Castro::do_old_sources() 10 4.813e-05 5.912e-05 7.173e-05 0.00% Castro::do_new_sources() 10 5.048e-05 6.274e-05 6.907e-05 0.00% FabArrayBase::getCPC() 41 4.898e-05 5.282e-05 6.459e-05 0.00% Castro::apply_source_to_state() 20 3.713e-05 5.186e-05 6.229e-05 0.00% Castro::construct_new_gravity() 10 3.396e-05 4.018e-05 5.146e-05 0.00% Castro::subcycle_advance_ctu() 10 4.009e-05 4.504e-05 5.079e-05 0.00% Castro::advance() 10 3.517e-05 4.305e-05 4.781e-05 0.00% Castro::construct_old_gravity() 10 3.474e-05 3.975e-05 4.506e-05 0.00% FabArrayBase::CPC::define() 2 2.136e-05 2.542e-05 3.954e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.407e-05 2.243e-05 3.842e-05 0.00% Amr::defBaseLevel() 1 1.683e-05 2.173e-05 2.939e-05 0.00% Castro::enforce_speed_limit() 62 2.504e-05 2.614e-05 2.786e-05 0.00% Castro::check_for_nan() 20 2.31e-05 2.461e-05 2.694e-05 0.00% Gravity::swapTimeLevels() 10 8.809e-06 1.292e-05 2.507e-05 0.00% Castro::post_timestep() 10 1.483e-05 1.697e-05 2.011e-05 0.00% Gravity::set_mass_offset() 10 8.794e-06 1.144e-05 1.726e-05 0.00% Castro::create_source_corrector() 10 7.72e-06 9.651e-06 1.184e-05 0.00% Castro::computeNewDt() 9 7.418e-06 8.417e-06 1.079e-05 0.00% Amr::initSubcycle() 1 8.91e-06 9.628e-06 1.055e-05 0.00% Castro::FluxRegCrseInit 10 8.369e-06 9.245e-06 1.047e-05 0.00% Amr::initialInit() 1 1.219e-06 3.304e-06 9.285e-06 0.00% Amr::init() 1 1.818e-06 2.78e-06 7.163e-06 0.00% Castro::retry_advance_ctu() 10 4.742e-06 5.838e-06 6.694e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.961e-06 4.869e-06 6.265e-06 0.00% Amr::InitializeInit() 1 1.821e-06 3.053e-06 5.936e-06 0.00% Castro::computeInitialDt() 2 3.036e-06 4.19e-06 5.752e-06 0.00% Castro::post_init() 1 2.604e-06 3.615e-06 5.259e-06 0.00% Castro::post_regrid() 1 1.731e-06 3.089e-06 4e-06 0.00% Castro::FluxRegFineAdd() 10 1.851e-06 2.285e-06 2.637e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.041e-06 1.242e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.596 3.597 3.598 100.00% Amr::coarseTimeStep() 10 3.395 3.395 3.395 94.35% Amr::timeStep() 10 3.381 3.382 3.383 94.03% Castro::advance() 10 3.365 3.365 3.366 93.56% Castro::subcycle_advance_ctu() 10 3.28 3.286 3.29 91.45% Castro::do_advance_ctu() 10 3.28 3.286 3.29 91.45% Castro::construct_ctu_hydro_source() 10 2.228 2.368 2.427 67.45% Gravity::make_radial_gravity() 21 0.3396 0.3501 0.3633 10.10% Gravity::get_new_grav_vector() 11 0.2271 0.2306 0.2325 6.46% Castro::construct_old_gravity() 10 0.1998 0.2068 0.2192 6.09% Gravity::get_old_grav_vector() 10 0.1991 0.2061 0.2185 6.07% Castro::construct_new_gravity() 10 0.2023 0.2051 0.2063 5.73% Amr::init() 1 0.1856 0.1857 0.1858 5.16% FillPatchIterator::Initialize 41 0.1666 0.1755 0.1851 5.14% Castro::initialize_do_advance() 10 0.1489 0.1675 0.1769 4.92% Amr::initialInit() 1 0.1693 0.1694 0.1696 4.71% Amr::InitializeInit() 1 0.06292 0.102 0.1402 3.90% Amr::defBaseLevel() 1 0.06291 0.102 0.1402 3.90% FillPatchSingleLevel 41 0.1177 0.1287 0.135 3.75% Castro::expand_state() 10 0.1069 0.1194 0.1284 3.57% Castro::initData() 1 0.04585 0.08411 0.1211 3.36% Castro::clean_state() 62 0.1163 0.1188 0.1208 3.36% Amr::FinalizeInit() 1 0.02914 0.06744 0.1063 2.96% Castro::estTimeStep() 21 0.0261 0.06819 0.1031 2.87% FabArray::ParallelCopy() 41 0.08022 0.09173 0.0977 2.72% amrex::Copy() 193 0.06771 0.0755 0.08257 2.30% FabArray::setVal() 143 0.06622 0.07389 0.08191 2.28% Castro::initialize_advance() 10 0.07203 0.07587 0.08085 2.25% Castro::computeInitialDt() 2 0.002047 0.04025 0.07924 2.20% Castro::do_new_sources() 10 0.06265 0.06949 0.07758 2.16% Castro::computeTemp() 63 0.06908 0.07109 0.07267 2.02% FabArray::ParallelCopy_finish() 41 0.03619 0.04878 0.05835 1.62% Castro::reset_internal_energy(MultiFab) 63 0.04983 0.05098 0.05187 1.44% Castro::reset_internal_energy(Fab) 1008 0.04954 0.05069 0.05157 1.43% Castro::do_old_sources() 10 0.04465 0.04692 0.04764 1.32% FabArray::ParallelCopy_nowait() 41 0.03927 0.04288 0.04445 1.24% Castro::normalize_species() 62 0.04184 0.04241 0.04291 1.19% StateDataPhysBCFunct::() 41 0.03224 0.03689 0.04044 1.12% StateData::FillBoundary(geom) 41 0.03214 0.0368 0.04035 1.12% Castro::construct_new_source() 50 0.0307 0.03332 0.03647 1.01% Castro::construct_new_gravity_source() 10 0.02426 0.02685 0.02996 0.83% Gravity::interpolate_monopole_grav() 21 0.0278 0.02919 0.0298 0.83% Castro::post_init() 1 0.02636 0.02659 0.02678 0.74% Amr::writePlotFile() 2 0.02637 0.02653 0.0267 0.74% Castro::post_timestep() 10 0.01603 0.01625 0.01675 0.47% VisMF::Write(FabArray) 2 0.01308 0.01377 0.01655 0.46% Castro::apply_source_to_state() 20 0.01428 0.01482 0.01532 0.43% FabArray::Saxpy() 20 0.01423 0.01477 0.01526 0.42% FabArray::setDomainBndry() 41 0.008757 0.01194 0.01296 0.36% Castro::Castro() 1 0.01117 0.01163 0.01248 0.35% Castro::check_for_nan() 20 0.01023 0.01094 0.01185 0.33% MultiFab::contains_nan() 20 0.01021 0.01091 0.01182 0.33% Castro::construct_old_source() 50 0.00897 0.01077 0.01134 0.32% Castro::construct_old_gravity_source() 10 0.008912 0.0107 0.01126 0.31% Castro::computeNewDt() 9 0.008926 0.008933 0.00894 0.25% Castro::initMFs() 1 0.007117 0.007573 0.008463 0.24% AmrLevel::AmrLevel(dm) 1 0.00585 0.006129 0.006583 0.18% StateData::define() 4 0.00583 0.006106 0.006544 0.18% Castro::enforce_min_density() 62 0.00587 0.006154 0.0065 0.18% Castro::swap_state_time_levels() 10 0.003599 0.004811 0.005019 0.14% Castro::finalize_advance() 10 0.002957 0.003423 0.004292 0.12% Castro::finalize_do_advance() 10 0.0009886 0.001684 0.002095 0.06% Castro::buildMetrics() 1 0.001783 0.001882 0.002039 0.06% Castro::post_regrid() 1 0.001582 0.001653 0.001726 0.05% Amr::InitAmr() 1 0.0002864 0.000317 0.0004209 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.212e-05 0.0001151 0.0001409 0.00% DistributionMapping::LeastUsedCPUs() 1 7.161e-06 0.0001092 0.0001335 0.00% Castro::enforce_consistent_e() 1 8.457e-05 9.048e-05 0.0001029 0.00% FabArrayBase::getCPC() 41 7.189e-05 7.824e-05 9.046e-05 0.00% Amr::writeSmallPlotFile() 1 2.535e-05 4.942e-05 7.24e-05 0.00% FabArrayBase::CPC::define() 2 2.136e-05 2.542e-05 3.954e-05 0.00% Castro::enforce_speed_limit() 62 2.504e-05 2.614e-05 2.786e-05 0.00% Gravity::swapTimeLevels() 10 8.809e-06 1.292e-05 2.507e-05 0.00% Gravity::set_mass_offset() 10 8.794e-06 1.144e-05 1.726e-05 0.00% Castro::create_source_corrector() 10 7.72e-06 9.651e-06 1.184e-05 0.00% Amr::initSubcycle() 1 8.91e-06 9.628e-06 1.055e-05 0.00% Castro::FluxRegCrseInit 10 8.369e-06 9.245e-06 1.047e-05 0.00% Castro::retry_advance_ctu() 10 4.742e-06 5.838e-06 6.694e-06 0.00% Castro::FluxRegFineAdd() 10 1.851e-06 2.285e-06 2.637e-06 0.00% DistributionMapping::Distribute() 1 8.55e-07 1.041e-06 1.242e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 30 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-8-gaaab804f1438) finalized