MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-8-gaaab804f1438) initialized Starting run at 05:41:58 UTC on 2023-03-15. Successfully read inputs file ... Castro git describe: 23.03-7-g4e534c06a AMReX git describe: 23.03-8-gaaab804f1 Microphysics git describe: 23.03-13-ga480b6a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016021857 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.367336208 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.354489671 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341145282 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.358024004 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.369102143 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336623296 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31791664 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317773056 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317906583 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.317392966 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010923835 seconds Ending run at 05:42:01 UTC on 2023-03-15. Run time = 3.600360873 Run time without initialization = 3.415795613 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.599 ... 3.6 ... 3.6 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2411 2.3733 2.4451 67.91% Gravity::make_radial_gravity() 21 0.3176 0.3315 0.346 9.61% Castro::do_advance_ctu() 10 0.04226 0.1144 0.2505 6.96% Castro::initData() 1 0.03982 0.07918 0.1175 3.26% Castro::estTimeStep() 21 0.02268 0.06654 0.1128 3.13% FabArray::setVal() 143 0.06826 0.07369 0.08253 2.29% amrex::Copy() 193 0.07084 0.07535 0.08121 2.26% FabArray::ParallelCopy_finish() 41 0.03656 0.04708 0.05465 1.52% Castro::reset_internal_energy(Fab) 1008 0.04844 0.05035 0.05163 1.43% FabArray::ParallelCopy_nowait() 41 0.03964 0.04269 0.04479 1.24% StateData::FillBoundary(geom) 41 0.0335 0.03831 0.04426 1.23% Castro::normalize_species() 62 0.0416 0.04219 0.04284 1.19% FillPatchIterator::Initialize 41 0.02903 0.03451 0.03687 1.02% Gravity::interpolate_monopole_grav() 21 0.02838 0.0293 0.03004 0.83% Castro::construct_new_gravity_source() 10 0.02385 0.02642 0.02946 0.82% Castro::computeTemp() 63 0.01908 0.02007 0.0207 0.58% Castro::initialize_do_advance() 10 0.01499 0.01787 0.02007 0.56% VisMF::Write(FabArray) 2 0.01376 0.01444 0.01727 0.48% FabArray::Saxpy() 20 0.01393 0.01453 0.01499 0.42% Castro::initialize_advance() 10 0.009606 0.01187 0.01445 0.40% FabArray::setDomainBndry() 41 0.009313 0.0121 0.01362 0.38% MultiFab::contains_nan() 20 0.0117 0.01217 0.01272 0.35% Castro::construct_old_gravity_source() 10 0.009719 0.01056 0.01102 0.31% Amr::writePlotFile() 2 0.00692 0.009558 0.01018 0.28% Castro::initMFs() 1 0.006781 0.007015 0.00771 0.21% Castro::construct_new_source() 50 0.00618 0.006431 0.006605 0.18% StateData::define() 4 0.005758 0.005968 0.006533 0.18% main() 1 0.00517 0.005968 0.006437 0.18% Castro::enforce_min_density() 62 0.005831 0.006046 0.006345 0.18% Gravity::get_new_grav_vector() 11 0.003119 0.00415 0.005709 0.16% Castro::swap_state_time_levels() 10 0.003499 0.004702 0.004898 0.14% Gravity::get_old_grav_vector() 10 0.001836 0.002496 0.002819 0.08% Amr::coarseTimeStep() 10 0.001187 0.001823 0.002374 0.07% Castro::finalize_do_advance() 10 0.001662 0.00207 0.002365 0.07% Castro::buildMetrics() 1 0.001602 0.001666 0.001838 0.05% Castro::expand_state() 10 0.0008968 0.001126 0.001244 0.03% Amr::timeStep() 10 0.0002026 0.0002587 0.0004587 0.01% Amr::InitAmr() 1 0.0002687 0.0003076 0.0004224 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002859 0.0003074 0.0003302 0.01% Castro::clean_state() 62 0.0001494 0.0001632 0.0001785 0.00% DistributionMapping::LeastUsedCPUs() 1 7.261e-06 0.0001097 0.0001464 0.00% Castro::Castro() 1 5.582e-05 8.35e-05 0.0001255 0.00% Castro::finalize_advance() 10 8.614e-05 9.915e-05 0.0001107 0.00% Castro::enforce_consistent_e() 1 7.82e-05 8.919e-05 9.954e-05 0.00% StateDataPhysBCFunct::() 41 8.641e-05 9.267e-05 9.911e-05 0.00% Amr::FinalizeInit() 1 3.234e-06 1.551e-05 9.262e-05 0.00% Castro::construct_old_source() 50 5.921e-05 7.334e-05 9.138e-05 0.00% Amr::writeSmallPlotFile() 1 6.205e-05 7.108e-05 9.098e-05 0.00% FabArray::ParallelCopy() 41 7.023e-05 7.746e-05 8.718e-05 0.00% Castro::do_new_sources() 10 5.663e-05 6.961e-05 7.99e-05 0.00% Castro::do_old_sources() 10 5.399e-05 6.61e-05 7.861e-05 0.00% FillPatchSingleLevel 41 6.914e-05 7.201e-05 7.749e-05 0.00% Castro::advance() 10 3.977e-05 4.899e-05 7.342e-05 0.00% FabArrayBase::getCPC() 41 4.845e-05 5.344e-05 7.152e-05 0.00% Castro::subcycle_advance_ctu() 10 3.861e-05 4.691e-05 5.663e-05 0.00% Castro::apply_source_to_state() 20 4.627e-05 5.116e-05 5.543e-05 0.00% Castro::construct_new_gravity() 10 3.445e-05 4.314e-05 4.942e-05 0.00% Castro::construct_old_gravity() 10 4.076e-05 4.482e-05 4.875e-05 0.00% FabArrayBase::CPC::define() 2 2.22e-05 2.769e-05 4.372e-05 0.00% Castro::enforce_speed_limit() 62 2.723e-05 2.911e-05 3.504e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.644e-05 2.294e-05 3.139e-05 0.00% Amr::defBaseLevel() 1 1.758e-05 2.305e-05 2.935e-05 0.00% Castro::check_for_nan() 20 2.317e-05 2.479e-05 2.785e-05 0.00% Amr::initSubcycle() 1 8.838e-06 1.262e-05 2.427e-05 0.00% Castro::post_timestep() 10 1.33e-05 1.566e-05 1.779e-05 0.00% Gravity::swapTimeLevels() 10 1.018e-05 1.232e-05 1.387e-05 0.00% Gravity::set_mass_offset() 10 9.514e-06 1.071e-05 1.225e-05 0.00% Castro::computeNewDt() 9 6.954e-06 8.468e-06 1.195e-05 0.00% Castro::create_source_corrector() 10 7.557e-06 9.384e-06 1.138e-05 0.00% Castro::post_init() 1 2.789e-06 4.99e-06 1.06e-05 0.00% Castro::FluxRegCrseInit 10 7.438e-06 8.567e-06 1.015e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.381e-06 4.466e-06 7.108e-06 0.00% Castro::retry_advance_ctu() 10 5.063e-06 5.353e-06 5.956e-06 0.00% Amr::InitializeInit() 1 2.146e-06 2.839e-06 5.044e-06 0.00% Castro::computeInitialDt() 2 3.598e-06 4.08e-06 4.61e-06 0.00% Castro::post_regrid() 1 1.834e-06 3.008e-06 3.815e-06 0.00% Castro::FluxRegFineAdd() 10 1.963e-06 2.33e-06 2.778e-06 0.00% Amr::init() 1 2.123e-06 2.292e-06 2.511e-06 0.00% Amr::initialInit() 1 1.165e-06 1.68e-06 1.962e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 9.604e-07 1.042e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.599 3.6 3.6 100.00% Amr::coarseTimeStep() 10 3.398 3.398 3.398 94.39% Amr::timeStep() 10 3.386 3.387 3.388 94.09% Castro::advance() 10 3.37 3.371 3.371 93.63% Castro::subcycle_advance_ctu() 10 3.286 3.293 3.297 91.57% Castro::do_advance_ctu() 10 3.286 3.293 3.297 91.57% Castro::construct_ctu_hydro_source() 10 2.241 2.373 2.445 67.91% Gravity::make_radial_gravity() 21 0.3341 0.3488 0.3623 10.06% Gravity::get_new_grav_vector() 11 0.2255 0.227 0.2292 6.36% Castro::construct_old_gravity() 10 0.1958 0.2075 0.2187 6.07% Gravity::get_old_grav_vector() 10 0.195 0.2068 0.218 6.06% Castro::construct_new_gravity() 10 0.2008 0.2019 0.2033 5.65% FillPatchIterator::Initialize 41 0.164 0.175 0.1852 5.14% Amr::init() 1 0.184 0.1841 0.1841 5.11% Castro::initialize_do_advance() 10 0.1582 0.1698 0.1782 4.95% Amr::initialInit() 1 0.1678 0.1681 0.1683 4.67% Amr::InitializeInit() 1 0.06115 0.1009 0.1392 3.87% Amr::defBaseLevel() 1 0.06114 0.1009 0.1392 3.87% FillPatchSingleLevel 41 0.1154 0.1284 0.1362 3.78% Castro::expand_state() 10 0.1102 0.1213 0.13 3.61% Castro::initData() 1 0.04396 0.08336 0.1219 3.39% Castro::clean_state() 62 0.1151 0.1182 0.1203 3.34% Castro::estTimeStep() 21 0.02268 0.06654 0.1128 3.13% Amr::FinalizeInit() 1 0.02903 0.0672 0.107 2.97% FabArray::ParallelCopy() 41 0.07964 0.08992 0.09618 2.67% FabArray::setVal() 143 0.06826 0.07369 0.08253 2.29% amrex::Copy() 193 0.07084 0.07535 0.08121 2.26% Castro::initialize_advance() 10 0.07043 0.07465 0.08101 2.25% Castro::computeInitialDt() 2 0.002098 0.0404 0.08018 2.23% Castro::do_new_sources() 10 0.0621 0.06911 0.07596 2.11% Castro::computeTemp() 63 0.06793 0.07073 0.07263 2.02% FabArray::ParallelCopy_finish() 41 0.03656 0.04708 0.05465 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04873 0.05065 0.05195 1.44% Castro::reset_internal_energy(Fab) 1008 0.04844 0.05035 0.05163 1.43% Castro::do_old_sources() 10 0.04517 0.04651 0.04751 1.32% FabArray::ParallelCopy_nowait() 41 0.03974 0.04277 0.04487 1.25% StateDataPhysBCFunct::() 41 0.03358 0.03841 0.04436 1.23% StateData::FillBoundary(geom) 41 0.0335 0.03831 0.04426 1.23% Castro::normalize_species() 62 0.0416 0.04219 0.04284 1.19% Castro::construct_new_source() 50 0.03026 0.03285 0.0359 1.00% Gravity::interpolate_monopole_grav() 21 0.02838 0.0293 0.03004 0.83% Castro::construct_new_gravity_source() 10 0.02385 0.02642 0.02946 0.82% Amr::writePlotFile() 2 0.02679 0.027 0.02717 0.75% Castro::post_init() 1 0.02593 0.02625 0.02642 0.73% VisMF::Write(FabArray) 2 0.01376 0.01444 0.01727 0.48% Castro::post_timestep() 10 0.01566 0.01604 0.01634 0.45% Castro::apply_source_to_state() 20 0.01398 0.01458 0.01504 0.42% FabArray::Saxpy() 20 0.01393 0.01453 0.01499 0.42% FabArray::setDomainBndry() 41 0.009313 0.0121 0.01362 0.38% Castro::check_for_nan() 20 0.01173 0.01219 0.01275 0.35% MultiFab::contains_nan() 20 0.0117 0.01217 0.01272 0.35% Castro::Castro() 1 0.01114 0.0114 0.01199 0.33% Castro::construct_old_source() 50 0.009779 0.01064 0.01111 0.31% Castro::construct_old_gravity_source() 10 0.009719 0.01056 0.01102 0.31% Castro::computeNewDt() 9 0.008528 0.008551 0.008574 0.24% Castro::initMFs() 1 0.006781 0.007015 0.00771 0.21% AmrLevel::AmrLevel(dm) 1 0.005782 0.005991 0.006555 0.18% StateData::define() 4 0.005758 0.005968 0.006533 0.18% Castro::enforce_min_density() 62 0.005831 0.006046 0.006345 0.18% Castro::swap_state_time_levels() 10 0.003499 0.004702 0.004898 0.14% Castro::finalize_advance() 10 0.002941 0.003331 0.003778 0.10% Castro::finalize_do_advance() 10 0.001662 0.00207 0.002365 0.07% Castro::buildMetrics() 1 0.001735 0.001801 0.001997 0.06% Castro::post_regrid() 1 0.001598 0.00165 0.001712 0.05% Amr::InitAmr() 1 0.0002777 0.0003202 0.0004312 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.154e-05 0.0001151 0.0001526 0.00% DistributionMapping::LeastUsedCPUs() 1 7.261e-06 0.0001097 0.0001464 0.00% FabArrayBase::getCPC() 41 7.233e-05 8.113e-05 0.0001017 0.00% Castro::enforce_consistent_e() 1 7.82e-05 8.919e-05 9.954e-05 0.00% Amr::writeSmallPlotFile() 1 6.205e-05 7.108e-05 9.098e-05 0.00% FabArrayBase::CPC::define() 2 2.22e-05 2.769e-05 4.372e-05 0.00% Castro::enforce_speed_limit() 62 2.723e-05 2.911e-05 3.504e-05 0.00% Amr::initSubcycle() 1 8.838e-06 1.262e-05 2.427e-05 0.00% Gravity::swapTimeLevels() 10 1.018e-05 1.232e-05 1.387e-05 0.00% Gravity::set_mass_offset() 10 9.514e-06 1.071e-05 1.225e-05 0.00% Castro::create_source_corrector() 10 7.557e-06 9.384e-06 1.138e-05 0.00% Castro::FluxRegCrseInit 10 7.438e-06 8.567e-06 1.015e-05 0.00% Castro::retry_advance_ctu() 10 5.063e-06 5.353e-06 5.956e-06 0.00% Castro::FluxRegFineAdd() 10 1.963e-06 2.33e-06 2.778e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 9.604e-07 1.042e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-8-gaaab804f1438) finalized