MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-12-gadcf4d4721b4) initialized Starting run at 18:11:25 UTC on 2023-03-16. Successfully read inputs file ... Castro git describe: 23.03-15-gc99e6fbe6 AMReX git describe: 23.03-12-gadcf4d472 Microphysics git describe: 23.03-15-gf8fb1850 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01710931 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364141563 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.347144849 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334023103 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334073426 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355584207 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339692467 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313140878 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31827107 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312629716 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31236663 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010611984 seconds Ending run at 18:11:28 UTC on 2023-03-16. Run time = 3.535615125 Run time without initialization = 3.348893651 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.535 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3142 2.3441 2.4123 68.23% Gravity::make_radial_gravity() 21 0.3207 0.3293 0.3385 9.57% Castro::estTimeStep() 21 0.02057 0.07302 0.123 3.48% Castro::initData() 1 0.03833 0.07914 0.119 3.37% Castro::do_advance_ctu() 10 0.01375 0.08079 0.1128 3.19% FabArray::setVal() 143 0.06576 0.07548 0.08691 2.46% amrex::Copy() 193 0.06604 0.07309 0.07909 2.24% FabArray::ParallelCopy_finish() 41 0.03694 0.04817 0.05647 1.60% Castro::reset_internal_energy(Fab) 1008 0.04795 0.04991 0.05118 1.45% Castro::normalize_species() 62 0.04125 0.04276 0.04518 1.28% FabArray::ParallelCopy_nowait() 41 0.03736 0.04149 0.04296 1.21% StateData::FillBoundary(geom) 41 0.03215 0.03516 0.03821 1.08% FillPatchIterator::Initialize 41 0.02942 0.03296 0.03529 1.00% Castro::construct_new_gravity_source() 10 0.02366 0.02715 0.03233 0.91% Gravity::interpolate_monopole_grav() 21 0.0282 0.02858 0.0291 0.82% Castro::initialize_do_advance() 10 0.01273 0.01775 0.02199 0.62% Castro::computeTemp() 63 0.01772 0.01963 0.02041 0.58% VisMF::Write(FabArray) 2 0.01373 0.01476 0.01807 0.51% FabArray::Saxpy() 20 0.01302 0.01463 0.01564 0.44% Castro::initialize_advance() 10 0.009967 0.01227 0.01467 0.41% MultiFab::contains_nan() 20 0.0115 0.01243 0.01318 0.37% FabArray::setDomainBndry() 41 0.008714 0.01137 0.01292 0.37% Amr::writePlotFile() 2 0.006881 0.01012 0.01136 0.32% Castro::construct_old_gravity_source() 10 0.007403 0.01039 0.01103 0.31% Castro::initMFs() 1 0.006847 0.007138 0.008889 0.25% main() 1 0.005374 0.00597 0.006521 0.18% Castro::construct_new_source() 50 0.005867 0.006183 0.006519 0.18% StateData::define() 4 0.005592 0.005716 0.006423 0.18% Castro::enforce_min_density() 62 0.005821 0.006086 0.006386 0.18% Gravity::get_new_grav_vector() 11 0.003008 0.00372 0.00528 0.15% Castro::swap_state_time_levels() 10 0.003451 0.004631 0.005051 0.14% Amr::coarseTimeStep() 10 0.001254 0.002479 0.003868 0.11% Gravity::get_old_grav_vector() 10 0.001747 0.0023 0.00264 0.07% Castro::finalize_do_advance() 10 0.0006589 0.001564 0.001959 0.06% Castro::buildMetrics() 1 0.001573 0.001625 0.001879 0.05% Castro::expand_state() 10 0.0006955 0.0008792 0.001139 0.03% Amr::timeStep() 10 0.0001788 0.0002426 0.0004465 0.01% Amr::InitAmr() 1 0.0002841 0.0003107 0.0004283 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002948 0.0003105 0.0003217 0.01% Castro::clean_state() 62 0.0001412 0.0001568 0.0002014 0.01% DistributionMapping::LeastUsedCPUs() 1 1.281e-05 0.0001247 0.000151 0.00% StateDataPhysBCFunct::() 41 8.656e-05 0.0001096 0.0001303 0.00% FillPatchSingleLevel 41 6.428e-05 7.248e-05 0.0001163 0.00% Castro::finalize_advance() 10 8.998e-05 9.868e-05 0.0001112 0.00% Amr::FinalizeInit() 1 3.604e-06 1.625e-05 9.715e-05 0.00% Castro::enforce_consistent_e() 1 7.356e-05 8.751e-05 9.585e-05 0.00% Castro::Castro() 1 5.796e-05 7.452e-05 8.791e-05 0.00% Castro::construct_old_source() 50 4.915e-05 7.202e-05 7.873e-05 0.00% Castro::do_new_sources() 10 5.501e-05 6.614e-05 7.769e-05 0.00% FabArray::ParallelCopy() 41 5.96e-05 6.964e-05 7.563e-05 0.00% Castro::do_old_sources() 10 4.616e-05 6.254e-05 7.437e-05 0.00% Amr::writeSmallPlotFile() 1 2.52e-05 6.537e-05 7.376e-05 0.00% Castro::construct_new_gravity() 10 3.234e-05 4.621e-05 6.973e-05 0.00% Castro::subcycle_advance_ctu() 10 3.615e-05 4.856e-05 5.643e-05 0.00% FabArrayBase::getCPC() 41 4.216e-05 4.873e-05 5.538e-05 0.00% Castro::construct_old_gravity() 10 3.562e-05 4.345e-05 5.407e-05 0.00% Castro::apply_source_to_state() 20 4.301e-05 4.578e-05 4.842e-05 0.00% Castro::advance() 10 3.929e-05 4.223e-05 4.674e-05 0.00% Amr::defBaseLevel() 1 1.737e-05 2.765e-05 4.376e-05 0.00% FabArrayBase::CPC::define() 2 2.158e-05 2.821e-05 4.149e-05 0.00% Castro::post_timestep() 10 1.456e-05 2.057e-05 3.084e-05 0.00% Castro::enforce_speed_limit() 62 2.544e-05 2.804e-05 3.068e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.637e-05 2.152e-05 2.624e-05 0.00% Castro::check_for_nan() 20 2.193e-05 2.327e-05 2.519e-05 0.00% Gravity::swapTimeLevels() 10 9.058e-06 1.092e-05 1.224e-05 0.00% Gravity::set_mass_offset() 10 9.436e-06 1.044e-05 1.221e-05 0.00% Castro::create_source_corrector() 10 6.763e-06 8.465e-06 1.084e-05 0.00% Amr::initSubcycle() 1 8.776e-06 9.359e-06 1.025e-05 0.00% Castro::FluxRegCrseInit 10 7.958e-06 8.963e-06 9.92e-06 0.00% Castro::computeNewDt() 9 8.01e-06 8.826e-06 9.367e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.636e-06 4.522e-06 6.902e-06 0.00% Castro::retry_advance_ctu() 10 4.493e-06 5.748e-06 6.87e-06 0.00% Castro::computeInitialDt() 2 3.37e-06 4.113e-06 5.039e-06 0.00% Amr::InitializeInit() 1 1.807e-06 2.559e-06 4.85e-06 0.00% Castro::post_init() 1 2.366e-06 3.35e-06 4.088e-06 0.00% Castro::post_regrid() 1 1.641e-06 2.753e-06 3.978e-06 0.00% Amr::init() 1 1.829e-06 2.122e-06 2.773e-06 0.00% Castro::FluxRegFineAdd() 10 1.816e-06 2.308e-06 2.642e-06 0.00% Amr::initialInit() 1 1.223e-06 1.725e-06 2.533e-06 0.00% DistributionMapping::Distribute() 1 8.89e-07 1.026e-06 1.31e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.535 3.536 100.00% Amr::coarseTimeStep() 10 3.332 3.332 3.332 94.23% Amr::timeStep() 10 3.318 3.319 3.321 93.92% Castro::advance() 10 3.302 3.303 3.304 93.46% Castro::subcycle_advance_ctu() 10 3.212 3.22 3.228 91.30% Castro::do_advance_ctu() 10 3.212 3.22 3.228 91.30% Castro::construct_ctu_hydro_source() 10 2.314 2.344 2.412 68.23% Gravity::make_radial_gravity() 21 0.3372 0.3463 0.3544 10.02% Gravity::get_new_grav_vector() 11 0.2253 0.2283 0.2299 6.50% Castro::construct_old_gravity() 10 0.1943 0.2005 0.2063 5.84% Gravity::get_old_grav_vector() 10 0.1936 0.1997 0.2057 5.82% Castro::construct_new_gravity() 10 0.2009 0.203 0.2041 5.77% Amr::init() 1 0.1861 0.1863 0.1863 5.27% FillPatchIterator::Initialize 41 0.1536 0.1695 0.1847 5.22% Castro::initialize_do_advance() 10 0.1508 0.1653 0.1774 5.02% Amr::initialInit() 1 0.1688 0.1691 0.1693 4.79% Amr::InitializeInit() 1 0.05943 0.1006 0.1403 3.97% Amr::defBaseLevel() 1 0.05943 0.1006 0.1403 3.97% FillPatchSingleLevel 41 0.1138 0.1251 0.1372 3.88% Castro::expand_state() 10 0.1036 0.1173 0.1301 3.68% Castro::initData() 1 0.04231 0.08322 0.1231 3.48% Castro::estTimeStep() 21 0.02057 0.07302 0.123 3.48% Castro::clean_state() 62 0.1127 0.1179 0.1213 3.43% Amr::FinalizeInit() 1 0.02903 0.06843 0.1098 3.11% FabArray::ParallelCopy() 41 0.07867 0.08981 0.09883 2.80% FabArray::setVal() 143 0.06576 0.07548 0.08691 2.46% Castro::initialize_advance() 10 0.07148 0.07931 0.08662 2.45% Castro::computeInitialDt() 2 0.00241 0.04205 0.08326 2.35% Castro::do_new_sources() 10 0.05968 0.0683 0.08039 2.27% amrex::Copy() 193 0.06604 0.07309 0.07909 2.24% Castro::computeTemp() 63 0.06597 0.06985 0.0719 2.03% FabArray::ParallelCopy_finish() 41 0.03694 0.04817 0.05647 1.60% Castro::reset_internal_energy(MultiFab) 63 0.04825 0.05022 0.05149 1.46% Castro::reset_internal_energy(Fab) 1008 0.04795 0.04991 0.05118 1.45% Castro::do_old_sources() 10 0.04245 0.0458 0.04708 1.33% Castro::normalize_species() 62 0.04125 0.04276 0.04518 1.28% FabArray::ParallelCopy_nowait() 41 0.03744 0.04157 0.04303 1.22% Castro::construct_new_source() 50 0.02982 0.03333 0.03885 1.10% StateDataPhysBCFunct::() 41 0.03228 0.03527 0.03833 1.08% StateData::FillBoundary(geom) 41 0.03215 0.03516 0.03821 1.08% Castro::construct_new_gravity_source() 10 0.02366 0.02715 0.03233 0.91% Gravity::interpolate_monopole_grav() 21 0.0282 0.02858 0.0291 0.82% Amr::writePlotFile() 2 0.02765 0.0279 0.0282 0.80% Castro::post_init() 1 0.02594 0.02622 0.0265 0.75% VisMF::Write(FabArray) 2 0.01373 0.01476 0.01807 0.51% Castro::post_timestep() 10 0.01532 0.01591 0.01632 0.46% Castro::apply_source_to_state() 20 0.01307 0.01467 0.01569 0.44% FabArray::Saxpy() 20 0.01302 0.01463 0.01564 0.44% Castro::check_for_nan() 20 0.01152 0.01245 0.0132 0.37% MultiFab::contains_nan() 20 0.0115 0.01243 0.01318 0.37% FabArray::setDomainBndry() 41 0.008714 0.01137 0.01292 0.37% Castro::Castro() 1 0.01131 0.01151 0.01239 0.35% Castro::construct_old_source() 50 0.007452 0.01046 0.01111 0.31% Castro::construct_old_gravity_source() 10 0.007403 0.01039 0.01103 0.31% Castro::initMFs() 1 0.006847 0.007138 0.008889 0.25% Castro::computeNewDt() 9 0.008417 0.008428 0.008436 0.24% AmrLevel::AmrLevel(dm) 1 0.005617 0.005738 0.006445 0.18% StateData::define() 4 0.005592 0.005716 0.006423 0.18% Castro::enforce_min_density() 62 0.005821 0.006086 0.006386 0.18% Castro::swap_state_time_levels() 10 0.003451 0.004631 0.005051 0.14% Castro::finalize_advance() 10 0.002973 0.003722 0.004521 0.13% Castro::buildMetrics() 1 0.00169 0.001756 0.002035 0.06% Castro::finalize_do_advance() 10 0.0006589 0.001564 0.001959 0.06% Castro::post_regrid() 1 0.001563 0.001596 0.001654 0.05% Amr::InitAmr() 1 0.0002939 0.00032 0.0004378 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.749e-05 0.0001302 0.0001584 0.00% DistributionMapping::LeastUsedCPUs() 1 1.281e-05 0.0001247 0.000151 0.00% Castro::enforce_consistent_e() 1 7.356e-05 8.751e-05 9.585e-05 0.00% FabArrayBase::getCPC() 41 6.61e-05 7.694e-05 9.331e-05 0.00% Amr::writeSmallPlotFile() 1 2.52e-05 6.537e-05 7.376e-05 0.00% FabArrayBase::CPC::define() 2 2.158e-05 2.821e-05 4.149e-05 0.00% Castro::enforce_speed_limit() 62 2.544e-05 2.804e-05 3.068e-05 0.00% Gravity::swapTimeLevels() 10 9.058e-06 1.092e-05 1.224e-05 0.00% Gravity::set_mass_offset() 10 9.436e-06 1.044e-05 1.221e-05 0.00% Castro::create_source_corrector() 10 6.763e-06 8.465e-06 1.084e-05 0.00% Amr::initSubcycle() 1 8.776e-06 9.359e-06 1.025e-05 0.00% Castro::FluxRegCrseInit 10 7.958e-06 8.963e-06 9.92e-06 0.00% Castro::retry_advance_ctu() 10 4.493e-06 5.748e-06 6.87e-06 0.00% Castro::FluxRegFineAdd() 10 1.816e-06 2.308e-06 2.642e-06 0.00% DistributionMapping::Distribute() 1 8.89e-07 1.026e-06 1.31e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-12-gadcf4d4721b4) finalized