MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-11-g0f4f9877c81e) initialized Starting run at 05:42:26 UTC on 2023-03-16. Successfully read inputs file ... Castro git describe: 23.03-8-g17ee5df0a AMReX git describe: 23.03-11-g0f4f9877c Microphysics git describe: 23.03-13-ga480b6a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016248954 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360526467 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.335716647 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335277186 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327425516 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.330284084 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.368009161 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310840288 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312468315 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.310900914 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310323848 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010312235 seconds Ending run at 05:42:29 UTC on 2023-03-16. Run time = 3.500506557 Run time without initialization = 3.319164835 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.499 ... 3.5 ... 3.501 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3032 2.3338 2.3731 67.79% Gravity::make_radial_gravity() 21 0.3126 0.3247 0.3403 9.72% FabArray::ParallelCopy_finish() 41 0.03772 0.06638 0.1142 3.26% Castro::initData() 1 0.04046 0.07899 0.1132 3.23% Castro::do_advance_ctu() 10 0.02658 0.07014 0.105 3.00% Castro::estTimeStep() 21 0.02128 0.05951 0.1014 2.90% FabArray::setVal() 143 0.05287 0.07075 0.0902 2.58% amrex::Copy() 193 0.06005 0.07171 0.07953 2.27% Castro::reset_internal_energy(Fab) 1008 0.04779 0.05036 0.05393 1.54% Castro::normalize_species() 62 0.0409 0.04237 0.04445 1.27% FabArray::ParallelCopy_nowait() 41 0.03517 0.0406 0.04252 1.21% StateData::FillBoundary(geom) 41 0.03248 0.03641 0.0406 1.16% FillPatchIterator::Initialize 41 0.02807 0.03343 0.03881 1.11% Gravity::interpolate_monopole_grav() 21 0.02796 0.02809 0.02849 0.81% Castro::construct_new_gravity_source() 10 0.02235 0.02466 0.02657 0.76% Castro::initialize_do_advance() 10 0.01303 0.01792 0.02229 0.64% Castro::computeTemp() 63 0.01839 0.02011 0.02127 0.61% VisMF::Write(FabArray) 2 0.01309 0.01389 0.01706 0.49% FabArray::Saxpy() 20 0.01205 0.0139 0.0149 0.43% Castro::initialize_advance() 10 0.003856 0.009718 0.01346 0.38% FabArray::setDomainBndry() 41 0.008603 0.0111 0.01265 0.36% MultiFab::contains_nan() 20 0.009818 0.01092 0.01176 0.34% Amr::writePlotFile() 2 0.007069 0.01018 0.01162 0.33% Castro::construct_old_gravity_source() 10 0.007174 0.01004 0.01071 0.31% Castro::initMFs() 1 0.006748 0.007313 0.008249 0.24% Castro::construct_new_source() 50 0.005531 0.006252 0.006697 0.19% Castro::enforce_min_density() 62 0.00561 0.006116 0.006592 0.19% StateData::define() 4 0.005688 0.00603 0.006522 0.19% main() 1 0.005095 0.005895 0.006314 0.18% Castro::swap_state_time_levels() 10 0.003353 0.004493 0.005422 0.15% Gravity::get_new_grav_vector() 11 0.003045 0.003629 0.004105 0.12% Gravity::get_old_grav_vector() 10 0.001826 0.002385 0.00282 0.08% Amr::coarseTimeStep() 10 0.001059 0.001783 0.002797 0.08% Castro::finalize_do_advance() 10 0.0005858 0.00172 0.002183 0.06% Castro::buildMetrics() 1 0.001572 0.001677 0.001838 0.05% Castro::expand_state() 10 0.0006868 0.0008144 0.0009042 0.03% Amr::timeStep() 10 0.0001722 0.0002487 0.0005106 0.01% Amr::InitAmr() 1 0.0002863 0.0003282 0.0004283 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002836 0.00031 0.0003394 0.01% Castro::clean_state() 62 0.00014 0.0001524 0.0001743 0.00% DistributionMapping::LeastUsedCPUs() 1 6.983e-06 0.0001022 0.0001468 0.00% StateDataPhysBCFunct::() 41 8.649e-05 9.794e-05 0.0001168 0.00% Castro::finalize_advance() 10 8.357e-05 9.999e-05 0.0001156 0.00% Castro::enforce_consistent_e() 1 7.477e-05 9.019e-05 0.0001097 0.00% FabArrayBase::getCPC() 41 4.103e-05 5.863e-05 9.745e-05 0.00% Castro::Castro() 1 5.721e-05 6.643e-05 9.122e-05 0.00% FabArray::ParallelCopy() 41 6.48e-05 7.356e-05 8.491e-05 0.00% Castro::do_new_sources() 10 5.446e-05 6.6e-05 8.269e-05 0.00% Castro::construct_old_source() 50 4.549e-05 6.517e-05 8.03e-05 0.00% Castro::do_old_sources() 10 5.399e-05 6.545e-05 7.844e-05 0.00% FillPatchSingleLevel 41 6.171e-05 6.817e-05 7.523e-05 0.00% Amr::writeSmallPlotFile() 1 2.535e-05 6.016e-05 7.382e-05 0.00% Amr::FinalizeInit() 1 3.504e-06 1.274e-05 7.347e-05 0.00% Castro::apply_source_to_state() 20 4.711e-05 5.008e-05 5.423e-05 0.00% Castro::subcycle_advance_ctu() 10 3.777e-05 4.446e-05 5.341e-05 0.00% Castro::construct_old_gravity() 10 3.502e-05 4.231e-05 5.115e-05 0.00% Castro::advance() 10 3.782e-05 4.32e-05 4.768e-05 0.00% Castro::enforce_speed_limit() 62 2.301e-05 2.722e-05 4.617e-05 0.00% Castro::construct_new_gravity() 10 3.297e-05 3.693e-05 4.366e-05 0.00% Castro::check_for_nan() 20 2.207e-05 2.496e-05 3.117e-05 0.00% FabArrayBase::CPC::define() 2 1.881e-05 2.287e-05 3.105e-05 0.00% Castro::computeNewDt() 9 7.554e-06 1.116e-05 3.034e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.536e-05 2.176e-05 2.674e-05 0.00% Amr::initSubcycle() 1 8.865e-06 1.165e-05 2.567e-05 0.00% Castro::post_timestep() 10 1.479e-05 1.693e-05 2.224e-05 0.00% Amr::defBaseLevel() 1 1.767e-05 2.017e-05 2.222e-05 0.00% Gravity::swapTimeLevels() 10 7.663e-06 1.234e-05 1.497e-05 0.00% Gravity::set_mass_offset() 10 1.003e-05 1.122e-05 1.232e-05 0.00% Castro::create_source_corrector() 10 7.124e-06 9.327e-06 1.106e-05 0.00% Castro::FluxRegCrseInit 10 8.061e-06 9.446e-06 1.104e-05 0.00% Castro::post_init() 1 2.564e-06 3.868e-06 8.503e-06 0.00% Castro::retry_advance_ctu() 10 4.314e-06 5.313e-06 6.644e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.526e-06 4.226e-06 5.017e-06 0.00% Amr::InitializeInit() 1 2.007e-06 2.398e-06 4.521e-06 0.00% Castro::computeInitialDt() 2 3.382e-06 3.854e-06 4.329e-06 0.00% Castro::FluxRegFineAdd() 10 1.942e-06 2.323e-06 3.159e-06 0.00% Castro::post_regrid() 1 1.751e-06 2.372e-06 3.011e-06 0.00% Amr::init() 1 1.781e-06 2.116e-06 2.597e-06 0.00% Amr::initialInit() 1 1.317e-06 1.501e-06 1.761e-06 0.00% DistributionMapping::Distribute() 1 9.14e-07 1.032e-06 1.136e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.499 3.5 3.501 100.00% Amr::coarseTimeStep() 10 3.303 3.303 3.303 94.35% Amr::timeStep() 10 3.289 3.29 3.291 94.02% Castro::advance() 10 3.273 3.274 3.275 93.55% Castro::subcycle_advance_ctu() 10 3.181 3.197 3.22 91.98% Castro::do_advance_ctu() 10 3.181 3.197 3.22 91.98% Castro::construct_ctu_hydro_source() 10 2.303 2.334 2.373 67.79% Gravity::make_radial_gravity() 21 0.3285 0.3412 0.3539 10.11% Gravity::get_new_grav_vector() 11 0.2184 0.22 0.2214 6.33% FillPatchIterator::Initialize 41 0.1616 0.1882 0.2189 6.25% Castro::construct_old_gravity() 10 0.1947 0.2051 0.2161 6.17% Gravity::get_old_grav_vector() 10 0.1936 0.2042 0.2155 6.16% Castro::initialize_do_advance() 10 0.1645 0.1807 0.1946 5.56% Castro::construct_new_gravity() 10 0.1913 0.1927 0.1936 5.53% FillPatchSingleLevel 41 0.1207 0.1437 0.1822 5.21% Amr::init() 1 0.1808 0.1808 0.1809 5.17% Amr::initialInit() 1 0.1644 0.1646 0.1651 4.72% Castro::expand_state() 10 0.1131 0.1328 0.1526 4.36% FabArray::ParallelCopy() 41 0.07996 0.1071 0.1496 4.27% Amr::InitializeInit() 1 0.06095 0.1004 0.1339 3.82% Amr::defBaseLevel() 1 0.06095 0.1004 0.1339 3.82% Castro::clean_state() 62 0.1135 0.1185 0.1248 3.56% Castro::initData() 1 0.04407 0.08301 0.1173 3.35% FabArray::ParallelCopy_finish() 41 0.03772 0.06638 0.1142 3.26% Amr::FinalizeInit() 1 0.03047 0.06421 0.1034 2.95% Castro::estTimeStep() 21 0.02128 0.05951 0.1014 2.90% FabArray::setVal() 143 0.05287 0.07075 0.0902 2.58% Castro::initialize_advance() 10 0.04989 0.07411 0.09001 2.57% amrex::Copy() 193 0.06005 0.07171 0.07953 2.27% Castro::computeInitialDt() 2 0.002145 0.03562 0.07499 2.14% Castro::computeTemp() 63 0.06647 0.07079 0.07496 2.14% Castro::do_new_sources() 10 0.06011 0.06397 0.06859 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04807 0.05067 0.05424 1.55% Castro::reset_internal_energy(Fab) 1008 0.04779 0.05036 0.05393 1.54% Castro::do_old_sources() 10 0.03935 0.0465 0.05058 1.44% Castro::normalize_species() 62 0.0409 0.04237 0.04445 1.27% FabArray::ParallelCopy_nowait() 41 0.0353 0.04069 0.04259 1.22% StateDataPhysBCFunct::() 41 0.0326 0.03651 0.0407 1.16% StateData::FillBoundary(geom) 41 0.03248 0.03641 0.0406 1.16% Castro::construct_new_source() 50 0.02789 0.03091 0.03318 0.95% Gravity::interpolate_monopole_grav() 21 0.02796 0.02809 0.02849 0.81% Castro::post_init() 1 0.02794 0.02817 0.02845 0.81% Amr::writePlotFile() 2 0.02614 0.02662 0.02689 0.77% Castro::construct_new_gravity_source() 10 0.02235 0.02466 0.02657 0.76% VisMF::Write(FabArray) 2 0.01309 0.01389 0.01706 0.49% Castro::post_timestep() 10 0.0156 0.01597 0.01634 0.47% Castro::apply_source_to_state() 20 0.01211 0.01395 0.01495 0.43% FabArray::Saxpy() 20 0.01205 0.0139 0.0149 0.43% FabArray::setDomainBndry() 41 0.008603 0.0111 0.01265 0.36% Castro::Castro() 1 0.01071 0.01123 0.01207 0.34% Castro::check_for_nan() 20 0.009849 0.01095 0.01178 0.34% MultiFab::contains_nan() 20 0.009818 0.01092 0.01176 0.34% Castro::construct_old_source() 50 0.007219 0.0101 0.01079 0.31% Castro::construct_old_gravity_source() 10 0.007174 0.01004 0.01071 0.31% Castro::computeNewDt() 9 0.009133 0.00915 0.00918 0.26% Castro::initMFs() 1 0.006748 0.007313 0.008249 0.24% Castro::enforce_min_density() 62 0.00561 0.006116 0.006592 0.19% AmrLevel::AmrLevel(dm) 1 0.005713 0.006052 0.006544 0.19% StateData::define() 4 0.005688 0.00603 0.006522 0.19% Castro::swap_state_time_levels() 10 0.003353 0.004493 0.005422 0.15% Castro::finalize_advance() 10 0.003063 0.00326 0.003479 0.10% Castro::finalize_do_advance() 10 0.0005858 0.00172 0.002183 0.06% Castro::buildMetrics() 1 0.001704 0.001824 0.002012 0.06% Castro::post_regrid() 1 0.001439 0.001604 0.001866 0.05% Amr::InitAmr() 1 0.0002958 0.0003398 0.0004371 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.145e-05 0.0001074 0.0001529 0.00% DistributionMapping::LeastUsedCPUs() 1 6.983e-06 0.0001022 0.0001468 0.00% FabArrayBase::getCPC() 41 6.498e-05 8.151e-05 0.0001285 0.00% Castro::enforce_consistent_e() 1 7.477e-05 9.019e-05 0.0001097 0.00% Amr::writeSmallPlotFile() 1 2.535e-05 6.016e-05 7.382e-05 0.00% Castro::enforce_speed_limit() 62 2.301e-05 2.722e-05 4.617e-05 0.00% FabArrayBase::CPC::define() 2 1.881e-05 2.287e-05 3.105e-05 0.00% Amr::initSubcycle() 1 8.865e-06 1.165e-05 2.567e-05 0.00% Gravity::swapTimeLevels() 10 7.663e-06 1.234e-05 1.497e-05 0.00% Gravity::set_mass_offset() 10 1.003e-05 1.122e-05 1.232e-05 0.00% Castro::create_source_corrector() 10 7.124e-06 9.327e-06 1.106e-05 0.00% Castro::FluxRegCrseInit 10 8.061e-06 9.446e-06 1.104e-05 0.00% Castro::retry_advance_ctu() 10 4.314e-06 5.313e-06 6.644e-06 0.00% Castro::FluxRegFineAdd() 10 1.942e-06 2.323e-06 3.159e-06 0.00% DistributionMapping::Distribute() 1 9.14e-07 1.032e-06 1.136e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-11-g0f4f9877c81e) finalized