MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-13-g254d3faba017) initialized Starting run at 05:42:09 UTC on 2023-03-17. Successfully read inputs file ... Castro git describe: 23.03-9-ge8cab45ef AMReX git describe: 23.03-13-g254d3faba Microphysics git describe: 23.03-17-g49f8ea1e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015988395 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362288001 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34639532 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.337525284 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335465014 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355946861 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337824422 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310957393 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310670441 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311412767 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312477277 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010524498 seconds Ending run at 05:42:13 UTC on 2023-03-17. Run time = 3.520883424 Run time without initialization = 3.338706663 Average number of zones advanced per microsecond: 0.785 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.52 ... 3.521 ... 3.521 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2732 2.3398 2.3747 67.44% Gravity::make_radial_gravity() 21 0.3184 0.3265 0.3401 9.66% Castro::do_advance_ctu() 10 0.02929 0.06733 0.1366 3.88% Castro::estTimeStep() 21 0.02372 0.06973 0.1171 3.33% Castro::initData() 1 0.03927 0.07823 0.1147 3.26% FabArray::setVal() 143 0.06276 0.07329 0.08586 2.44% amrex::Copy() 193 0.06256 0.07445 0.08305 2.36% FabArray::ParallelCopy_finish() 41 0.03506 0.05562 0.08044 2.28% Castro::reset_internal_energy(Fab) 1008 0.04786 0.04965 0.05085 1.44% FabArray::ParallelCopy_nowait() 41 0.03808 0.04238 0.04452 1.26% Castro::normalize_species() 62 0.04142 0.04257 0.04394 1.25% StateData::FillBoundary(geom) 41 0.03333 0.03739 0.04013 1.14% FillPatchIterator::Initialize 41 0.02935 0.03529 0.03898 1.11% Castro::construct_new_gravity_source() 10 0.02349 0.02696 0.03193 0.91% Gravity::interpolate_monopole_grav() 21 0.0283 0.02919 0.03093 0.88% Castro::initialize_do_advance() 10 0.01254 0.01823 0.02085 0.59% Castro::computeTemp() 63 0.01829 0.01958 0.02035 0.58% VisMF::Write(FabArray) 2 0.01355 0.01427 0.01703 0.48% FabArray::Saxpy() 20 0.0127 0.01455 0.01551 0.44% Castro::initialize_advance() 10 0.008354 0.01122 0.01426 0.41% FabArray::setDomainBndry() 41 0.008942 0.01174 0.01296 0.37% MultiFab::contains_nan() 20 0.01045 0.01112 0.01221 0.35% Castro::construct_old_gravity_source() 10 0.007554 0.0104 0.01104 0.31% Amr::writePlotFile() 2 0.006883 0.009891 0.01096 0.31% Castro::initMFs() 1 0.00693 0.007218 0.008938 0.25% StateData::define() 4 0.005771 0.005895 0.006554 0.19% Castro::construct_new_source() 50 0.005731 0.006227 0.006487 0.18% main() 1 0.005136 0.005866 0.006314 0.18% Castro::enforce_min_density() 62 0.005646 0.005991 0.006275 0.18% Castro::swap_state_time_levels() 10 0.003397 0.004506 0.004766 0.14% Gravity::get_new_grav_vector() 11 0.003039 0.003697 0.004129 0.12% Amr::coarseTimeStep() 10 0.001732 0.002537 0.00335 0.10% Gravity::get_old_grav_vector() 10 0.001891 0.002537 0.003087 0.09% Castro::buildMetrics() 1 0.00164 0.001672 0.001853 0.05% Castro::finalize_do_advance() 10 0.0006457 0.001474 0.001791 0.05% Castro::expand_state() 10 0.0007527 0.001055 0.00114 0.03% Amr::timeStep() 10 0.0001949 0.0002647 0.0005425 0.02% Amr::InitAmr() 1 0.0002875 0.0003181 0.0004873 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.0002829 0.0002959 0.01% DistributionMapping::LeastUsedCPUs() 1 7.824e-06 0.0001747 0.0002018 0.01% Castro::clean_state() 62 0.0001337 0.000143 0.0001569 0.00% Castro::finalize_advance() 10 7.87e-05 9.559e-05 0.0001154 0.00% Castro::enforce_consistent_e() 1 7.691e-05 8.884e-05 0.0001085 0.00% StateDataPhysBCFunct::() 41 8.127e-05 9.032e-05 9.638e-05 0.00% Castro::Castro() 1 5.425e-05 7.329e-05 8.499e-05 0.00% FabArray::ParallelCopy() 41 6.633e-05 7.371e-05 8.255e-05 0.00% Castro::construct_old_source() 50 5.161e-05 6.751e-05 7.996e-05 0.00% FillPatchSingleLevel 41 6.483e-05 7.004e-05 7.635e-05 0.00% Castro::do_new_sources() 10 5.187e-05 6.313e-05 7.574e-05 0.00% Amr::writeSmallPlotFile() 1 3.212e-05 6.103e-05 7.439e-05 0.00% Castro::do_old_sources() 10 5.141e-05 6.424e-05 7.375e-05 0.00% Amr::FinalizeInit() 1 4.139e-06 1.383e-05 7.197e-05 0.00% FabArrayBase::getCPC() 41 3.819e-05 4.785e-05 5.434e-05 0.00% Castro::subcycle_advance_ctu() 10 3.55e-05 4.299e-05 5.42e-05 0.00% Castro::apply_source_to_state() 20 3.502e-05 4.314e-05 5.407e-05 0.00% Castro::construct_old_gravity() 10 3.668e-05 4.22e-05 5.393e-05 0.00% Castro::construct_new_gravity() 10 3.79e-05 4.268e-05 5.123e-05 0.00% Castro::advance() 10 3.744e-05 4.144e-05 4.917e-05 0.00% Amr::defBaseLevel() 1 1.787e-05 2.862e-05 3.983e-05 0.00% FabArrayBase::CPC::define() 2 2.115e-05 2.612e-05 3.369e-05 0.00% Castro::post_timestep() 10 1.389e-05 1.725e-05 3.204e-05 0.00% Castro::enforce_speed_limit() 62 2.416e-05 2.664e-05 2.948e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.649e-05 2.084e-05 2.689e-05 0.00% Castro::check_for_nan() 20 2.156e-05 2.309e-05 2.586e-05 0.00% Gravity::swapTimeLevels() 10 9.148e-06 1.181e-05 1.374e-05 0.00% Gravity::set_mass_offset() 10 9.172e-06 1.014e-05 1.104e-05 0.00% Castro::create_source_corrector() 10 7.842e-06 9.335e-06 1.073e-05 0.00% Amr::initSubcycle() 1 8.841e-06 9.456e-06 1.033e-05 0.00% Castro::computeNewDt() 9 7.253e-06 8.016e-06 8.608e-06 0.00% Castro::FluxRegCrseInit 10 7.834e-06 8.152e-06 8.599e-06 0.00% Castro::retry_advance_ctu() 10 4.624e-06 5.89e-06 7.063e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.411e-06 4.477e-06 6.418e-06 0.00% Amr::InitializeInit() 1 1.884e-06 2.412e-06 5.011e-06 0.00% Castro::computeInitialDt() 2 3.221e-06 4.18e-06 5.011e-06 0.00% Castro::post_init() 1 2.878e-06 3.556e-06 4.318e-06 0.00% DistributionMapping::Distribute() 1 9.47e-07 1.48e-06 4.315e-06 0.00% Castro::post_regrid() 1 2.307e-06 3.013e-06 3.721e-06 0.00% Castro::FluxRegFineAdd() 10 2.134e-06 2.473e-06 2.887e-06 0.00% Amr::initialInit() 1 1.279e-06 1.591e-06 2.616e-06 0.00% Amr::init() 1 1.605e-06 2.046e-06 2.415e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.52 3.52 3.521 100.00% Amr::coarseTimeStep() 10 3.322 3.322 3.322 94.35% Amr::timeStep() 10 3.309 3.31 3.31 94.02% Castro::advance() 10 3.293 3.293 3.294 93.57% Castro::subcycle_advance_ctu() 10 3.206 3.214 3.221 91.49% Castro::do_advance_ctu() 10 3.206 3.214 3.221 91.49% Castro::construct_ctu_hydro_source() 10 2.273 2.34 2.375 67.44% Gravity::make_radial_gravity() 21 0.3356 0.3438 0.3541 10.06% Gravity::get_new_grav_vector() 11 0.2246 0.2272 0.2281 6.48% Castro::construct_old_gravity() 10 0.2 0.2054 0.2134 6.06% Gravity::get_old_grav_vector() 10 0.1987 0.2045 0.2127 6.04% Castro::construct_new_gravity() 10 0.2005 0.202 0.2027 5.76% FillPatchIterator::Initialize 41 0.1659 0.1827 0.1943 5.52% Castro::initialize_do_advance() 10 0.159 0.1725 0.1828 5.19% Amr::init() 1 0.1815 0.1817 0.1817 5.16% Amr::initialInit() 1 0.165 0.1654 0.166 4.71% FillPatchSingleLevel 41 0.1169 0.1357 0.1556 4.42% Amr::InitializeInit() 1 0.06094 0.1001 0.1367 3.88% Amr::defBaseLevel() 1 0.06094 0.1001 0.1367 3.88% Castro::expand_state() 10 0.1097 0.1241 0.1347 3.82% Castro::clean_state() 62 0.1134 0.1173 0.1207 3.43% Castro::initData() 1 0.04332 0.08231 0.119 3.38% FabArray::ParallelCopy() 41 0.07892 0.09814 0.1187 3.37% Castro::estTimeStep() 21 0.02372 0.06973 0.1171 3.33% Amr::FinalizeInit() 1 0.0292 0.06528 0.1041 2.96% FabArray::setVal() 143 0.06276 0.07329 0.08586 2.44% Castro::initialize_advance() 10 0.06876 0.07561 0.0844 2.40% amrex::Copy() 193 0.06256 0.07445 0.08305 2.36% FabArray::ParallelCopy_finish() 41 0.03506 0.05562 0.08044 2.28% Castro::do_new_sources() 10 0.06049 0.0685 0.07989 2.27% Castro::computeInitialDt() 2 0.002244 0.03882 0.07801 2.22% Castro::computeTemp() 63 0.06644 0.06952 0.07149 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04815 0.04993 0.05113 1.45% Castro::reset_internal_energy(Fab) 1008 0.04786 0.04965 0.05085 1.44% Castro::do_old_sources() 10 0.04051 0.04551 0.04676 1.33% FabArray::ParallelCopy_nowait() 41 0.03817 0.04245 0.04459 1.27% Castro::normalize_species() 62 0.04142 0.04257 0.04394 1.25% StateDataPhysBCFunct::() 41 0.03342 0.03748 0.04023 1.14% StateData::FillBoundary(geom) 41 0.03333 0.03739 0.04013 1.14% Castro::construct_new_source() 50 0.02962 0.03319 0.03842 1.09% Castro::construct_new_gravity_source() 10 0.02349 0.02696 0.03193 0.91% Gravity::interpolate_monopole_grav() 21 0.0283 0.02919 0.03093 0.88% Amr::writePlotFile() 2 0.02641 0.02696 0.02738 0.78% Castro::post_init() 1 0.02567 0.02608 0.02659 0.76% VisMF::Write(FabArray) 2 0.01355 0.01427 0.01703 0.48% Castro::post_timestep() 10 0.01543 0.01595 0.01627 0.46% Castro::apply_source_to_state() 20 0.01273 0.01459 0.01556 0.44% FabArray::Saxpy() 20 0.0127 0.01455 0.01551 0.44% FabArray::setDomainBndry() 41 0.008942 0.01174 0.01296 0.37% Castro::Castro() 1 0.01149 0.01166 0.01253 0.36% Castro::check_for_nan() 20 0.01048 0.01114 0.01223 0.35% MultiFab::contains_nan() 20 0.01045 0.01112 0.01221 0.35% Castro::construct_old_source() 50 0.007606 0.01047 0.01111 0.32% Castro::construct_old_gravity_source() 10 0.007554 0.0104 0.01104 0.31% Castro::initMFs() 1 0.00693 0.007218 0.008938 0.25% Castro::computeNewDt() 9 0.008451 0.008456 0.008462 0.24% AmrLevel::AmrLevel(dm) 1 0.005791 0.005916 0.006573 0.19% StateData::define() 4 0.005771 0.005895 0.006554 0.19% Castro::enforce_min_density() 62 0.005646 0.005991 0.006275 0.18% Castro::swap_state_time_levels() 10 0.003397 0.004506 0.004766 0.14% Castro::finalize_advance() 10 0.002895 0.003671 0.004393 0.12% Castro::buildMetrics() 1 0.001765 0.001803 0.002005 0.06% Castro::finalize_do_advance() 10 0.0006457 0.001474 0.001791 0.05% Castro::post_regrid() 1 0.001572 0.001616 0.001682 0.05% Amr::InitAmr() 1 0.0002965 0.0003276 0.0004966 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.223e-05 0.0001806 0.000209 0.01% DistributionMapping::LeastUsedCPUs() 1 7.824e-06 0.0001747 0.0002018 0.01% Castro::enforce_consistent_e() 1 7.691e-05 8.884e-05 0.0001085 0.00% FabArrayBase::getCPC() 41 6.295e-05 7.397e-05 8.623e-05 0.00% Amr::writeSmallPlotFile() 1 3.212e-05 6.103e-05 7.439e-05 0.00% FabArrayBase::CPC::define() 2 2.115e-05 2.612e-05 3.369e-05 0.00% Castro::enforce_speed_limit() 62 2.416e-05 2.664e-05 2.948e-05 0.00% Gravity::swapTimeLevels() 10 9.148e-06 1.181e-05 1.374e-05 0.00% Gravity::set_mass_offset() 10 9.172e-06 1.014e-05 1.104e-05 0.00% Castro::create_source_corrector() 10 7.842e-06 9.335e-06 1.073e-05 0.00% Amr::initSubcycle() 1 8.841e-06 9.456e-06 1.033e-05 0.00% Castro::FluxRegCrseInit 10 7.834e-06 8.152e-06 8.599e-06 0.00% Castro::retry_advance_ctu() 10 4.624e-06 5.89e-06 7.063e-06 0.00% DistributionMapping::Distribute() 1 9.47e-07 1.48e-06 4.315e-06 0.00% Castro::FluxRegFineAdd() 10 2.134e-06 2.473e-06 2.887e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-13-g254d3faba017) finalized