MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-18-gf22705a9a2c6) initialized Starting run at 05:42:22 UTC on 2023-03-22. Successfully read inputs file ... Castro git describe: 23.03-10-g2433cabb3 AMReX git describe: 23.03-18-gf22705a9a Microphysics git describe: 23.03-20-g47547e7e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016287489 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358524167 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.362172783 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331268241 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331240413 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359770172 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.330772506 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311166709 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310055293 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.308716696 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.308734665 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.016995182 seconds Ending run at 05:42:26 UTC on 2023-03-22. Run time = 3.553194674 Run time without initialization = 3.336614952 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.552 ... 3.553 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2982 2.3409 2.4175 68.04% Gravity::make_radial_gravity() 21 0.3187 0.3281 0.3444 9.69% Castro::estTimeStep() 21 0.02084 0.08942 0.1436 4.04% Castro::initData() 1 0.03841 0.08452 0.1399 3.94% Castro::do_advance_ctu() 10 0.005683 0.08643 0.1335 3.76% FabArray::setVal() 143 0.06462 0.07016 0.081 2.28% amrex::Copy() 193 0.05922 0.07094 0.07803 2.20% FabArray::ParallelCopy_finish() 41 0.03336 0.04526 0.0648 1.82% Castro::reset_internal_energy(Fab) 1008 0.04836 0.05005 0.0515 1.45% Castro::normalize_species() 62 0.04164 0.04221 0.04326 1.22% FabArray::ParallelCopy_nowait() 41 0.03711 0.04147 0.04314 1.21% StateData::FillBoundary(geom) 41 0.03417 0.03731 0.04008 1.13% FillPatchIterator::Initialize 41 0.02967 0.0333 0.03584 1.01% Castro::construct_new_gravity_source() 10 0.02342 0.02603 0.02957 0.83% Gravity::interpolate_monopole_grav() 21 0.02859 0.02901 0.02945 0.83% Castro::computeTemp() 63 0.01895 0.01988 0.02081 0.59% Castro::initialize_do_advance() 10 0.0126 0.01712 0.01903 0.54% Amr::writePlotFile() 2 0.01337 0.01647 0.01724 0.49% VisMF::Write(FabArray) 2 0.01383 0.01452 0.01724 0.49% FabArray::Saxpy() 20 0.01264 0.01392 0.01481 0.42% Castro::initialize_advance() 10 0.008154 0.01123 0.01449 0.41% FabArray::setDomainBndry() 41 0.008959 0.0113 0.01272 0.36% MultiFab::contains_nan() 20 0.01031 0.01103 0.01234 0.35% Castro::construct_old_gravity_source() 10 0.007538 0.01029 0.01102 0.31% Castro::initMFs() 1 0.006885 0.007993 0.01042 0.29% StateData::define() 4 0.005676 0.006464 0.008308 0.23% main() 1 0.005537 0.006158 0.006569 0.18% Castro::construct_new_source() 50 0.005661 0.006208 0.006523 0.18% Castro::enforce_min_density() 62 0.005772 0.005964 0.006311 0.18% Castro::swap_state_time_levels() 10 0.003345 0.004456 0.004699 0.13% Gravity::get_new_grav_vector() 11 0.003027 0.003693 0.004164 0.12% Gravity::get_old_grav_vector() 10 0.001789 0.002377 0.002801 0.08% Amr::coarseTimeStep() 10 0.0009996 0.001935 0.002649 0.07% Castro::buildMetrics() 1 0.001609 0.001855 0.002413 0.07% Castro::finalize_do_advance() 10 0.0007891 0.001467 0.001738 0.05% Castro::expand_state() 10 0.0008304 0.0009308 0.001027 0.03% Amr::InitAmr() 1 0.0002668 0.0003631 0.0005191 0.01% Amr::timeStep() 10 0.00019 0.0002383 0.0003796 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002844 0.0003095 0.0003448 0.01% DistributionMapping::LeastUsedCPUs() 1 7.065e-06 0.0001932 0.0002944 0.01% Castro::clean_state() 62 0.000146 0.0001613 0.0001867 0.01% Castro::finalize_advance() 10 8.227e-05 0.0001018 0.0001326 0.00% StateDataPhysBCFunct::() 41 8.054e-05 9.122e-05 0.0001105 0.00% Castro::enforce_consistent_e() 1 7.777e-05 9.079e-05 0.0001095 0.00% FillPatchSingleLevel 41 6.05e-05 6.979e-05 9.197e-05 0.00% FabArray::ParallelCopy() 41 6.353e-05 7.285e-05 8.643e-05 0.00% Amr::FinalizeInit() 1 4.274e-06 1.522e-05 7.86e-05 0.00% Castro::construct_old_source() 50 5.736e-05 6.853e-05 7.852e-05 0.00% Castro::Castro() 1 5.216e-05 6.809e-05 7.737e-05 0.00% Castro::advance() 10 3.811e-05 4.742e-05 7.512e-05 0.00% Castro::do_old_sources() 10 5.53e-05 6.385e-05 7.122e-05 0.00% Castro::do_new_sources() 10 5.456e-05 6.562e-05 7.093e-05 0.00% FabArrayBase::getCPC() 41 4.311e-05 5.396e-05 7.062e-05 0.00% Amr::writeSmallPlotFile() 1 2.659e-05 5.412e-05 7.058e-05 0.00% Castro::subcycle_advance_ctu() 10 3.792e-05 4.709e-05 5.909e-05 0.00% Castro::apply_source_to_state() 20 4.125e-05 4.628e-05 5.497e-05 0.00% Castro::construct_new_gravity() 10 3.38e-05 3.981e-05 5.185e-05 0.00% Castro::construct_old_gravity() 10 3.752e-05 4.002e-05 4.365e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.143e-05 2.857e-05 3.585e-05 0.00% Amr::defBaseLevel() 1 1.767e-05 2.237e-05 3.319e-05 0.00% Castro::enforce_speed_limit() 62 2.531e-05 2.783e-05 3.315e-05 0.00% FabArrayBase::CPC::define() 2 2.154e-05 2.506e-05 3.063e-05 0.00% Castro::check_for_nan() 20 2.028e-05 2.233e-05 2.55e-05 0.00% Castro::post_timestep() 10 1.203e-05 1.496e-05 1.807e-05 0.00% Amr::initSubcycle() 1 8.912e-06 1.121e-05 1.675e-05 0.00% Gravity::swapTimeLevels() 10 8.797e-06 1.147e-05 1.608e-05 0.00% Castro::FluxRegCrseInit 10 8.167e-06 1.131e-05 1.591e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.479e-06 5.613e-06 1.369e-05 0.00% Gravity::set_mass_offset() 10 9.394e-06 1.046e-05 1.212e-05 0.00% Castro::create_source_corrector() 10 8.219e-06 9.361e-06 1.154e-05 0.00% Castro::computeInitialDt() 2 3.242e-06 4.954e-06 8.974e-06 0.00% Castro::computeNewDt() 9 6.861e-06 7.734e-06 8.625e-06 0.00% Castro::FluxRegFineAdd() 10 2.031e-06 3.644e-06 8.052e-06 0.00% Castro::post_regrid() 1 2.878e-06 4.801e-06 7.24e-06 0.00% Amr::initialInit() 1 1.278e-06 2.192e-06 6.879e-06 0.00% Castro::retry_advance_ctu() 10 4.829e-06 5.339e-06 6.121e-06 0.00% Amr::InitializeInit() 1 2.062e-06 2.715e-06 5.479e-06 0.00% Castro::post_init() 1 2.526e-06 3.54e-06 4.505e-06 0.00% Amr::init() 1 1.676e-06 1.935e-06 2.2e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.006e-06 1.251e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.553 3.553 100.00% Amr::coarseTimeStep() 10 3.313 3.313 3.313 93.24% Amr::timeStep() 10 3.301 3.302 3.302 92.94% Castro::advance() 10 3.285 3.285 3.286 92.48% Castro::subcycle_advance_ctu() 10 3.203 3.208 3.212 90.40% Castro::do_advance_ctu() 10 3.203 3.208 3.212 90.40% Castro::construct_ctu_hydro_source() 10 2.298 2.341 2.418 68.04% Gravity::make_radial_gravity() 21 0.3347 0.3445 0.3584 10.09% Gravity::get_new_grav_vector() 11 0.2245 0.2266 0.2282 6.42% Amr::init() 1 0.2158 0.216 0.2161 6.08% Castro::construct_old_gravity() 10 0.1938 0.2009 0.2124 5.98% Gravity::get_old_grav_vector() 10 0.193 0.2002 0.2118 5.96% Amr::initialInit() 1 0.1991 0.1993 0.1995 5.61% Castro::construct_new_gravity() 10 0.1974 0.1982 0.1987 5.59% FillPatchIterator::Initialize 41 0.1568 0.1689 0.1754 4.94% Castro::initialize_do_advance() 10 0.1534 0.1633 0.1713 4.82% Amr::InitializeInit() 1 0.05893 0.107 0.1666 4.69% Amr::defBaseLevel() 1 0.05893 0.107 0.1666 4.69% Castro::estTimeStep() 21 0.02084 0.08942 0.1436 4.04% Castro::initData() 1 0.04224 0.08838 0.1436 4.04% Amr::FinalizeInit() 1 0.03243 0.09228 0.1401 3.94% FillPatchSingleLevel 41 0.1169 0.1244 0.1365 3.84% Castro::expand_state() 10 0.1039 0.116 0.1245 3.50% Castro::clean_state() 62 0.1152 0.1176 0.1204 3.39% Castro::computeInitialDt() 2 0.002201 0.062 0.1102 3.10% FabArray::ParallelCopy() 41 0.07664 0.08688 0.1021 2.87% FabArray::setVal() 143 0.06462 0.07016 0.081 2.28% Castro::initialize_advance() 10 0.06894 0.07343 0.07927 2.23% amrex::Copy() 193 0.05922 0.07094 0.07803 2.20% Castro::do_new_sources() 10 0.06082 0.06658 0.0752 2.12% Castro::computeTemp() 63 0.06828 0.07024 0.07242 2.04% FabArray::ParallelCopy_finish() 41 0.03336 0.04526 0.0648 1.82% Castro::reset_internal_energy(MultiFab) 63 0.04865 0.05036 0.0518 1.46% Castro::reset_internal_energy(Fab) 1008 0.04836 0.05005 0.0515 1.45% Castro::do_old_sources() 10 0.04117 0.04536 0.04669 1.31% Castro::normalize_species() 62 0.04164 0.04221 0.04326 1.22% FabArray::ParallelCopy_nowait() 41 0.03721 0.04155 0.04321 1.22% StateDataPhysBCFunct::() 41 0.03428 0.0374 0.04017 1.13% StateData::FillBoundary(geom) 41 0.03417 0.03731 0.04008 1.13% Castro::construct_new_source() 50 0.02955 0.03224 0.03603 1.01% Amr::writePlotFile() 2 0.0335 0.0338 0.03412 0.96% Castro::post_init() 1 0.02953 0.02984 0.03002 0.84% Castro::construct_new_gravity_source() 10 0.02342 0.02603 0.02957 0.83% Gravity::interpolate_monopole_grav() 21 0.02859 0.02901 0.02945 0.83% VisMF::Write(FabArray) 2 0.01383 0.01452 0.01724 0.49% Castro::post_timestep() 10 0.01561 0.01593 0.01635 0.46% Castro::apply_source_to_state() 20 0.01269 0.01397 0.01485 0.42% FabArray::Saxpy() 20 0.01264 0.01392 0.01481 0.42% Castro::Castro() 1 0.01066 0.0119 0.01463 0.41% FabArray::setDomainBndry() 41 0.008959 0.0113 0.01272 0.36% Castro::check_for_nan() 20 0.01033 0.01105 0.01236 0.35% MultiFab::contains_nan() 20 0.01031 0.01103 0.01234 0.35% Castro::construct_old_source() 50 0.007596 0.01036 0.0111 0.31% Castro::construct_old_gravity_source() 10 0.007538 0.01029 0.01102 0.31% Castro::initMFs() 1 0.006885 0.007993 0.01042 0.29% Castro::computeNewDt() 9 0.008407 0.008423 0.008429 0.24% AmrLevel::AmrLevel(dm) 1 0.005707 0.006492 0.008343 0.23% StateData::define() 4 0.005676 0.006464 0.008308 0.23% Castro::enforce_min_density() 62 0.005772 0.005964 0.006311 0.18% Castro::swap_state_time_levels() 10 0.003345 0.004456 0.004699 0.13% Castro::finalize_advance() 10 0.003003 0.003454 0.003952 0.11% Castro::buildMetrics() 1 0.001729 0.002018 0.002628 0.07% Castro::post_regrid() 1 0.001602 0.001671 0.001894 0.05% Castro::finalize_do_advance() 10 0.0007891 0.001467 0.001738 0.05% Amr::InitAmr() 1 0.000276 0.0003743 0.0005354 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.221e-05 0.0001998 0.0003031 0.01% DistributionMapping::LeastUsedCPUs() 1 7.065e-06 0.0001932 0.0002944 0.01% Castro::enforce_consistent_e() 1 7.777e-05 9.079e-05 0.0001095 0.00% FabArrayBase::getCPC() 41 6.774e-05 7.902e-05 9.684e-05 0.00% Amr::writeSmallPlotFile() 1 2.659e-05 5.412e-05 7.058e-05 0.00% Castro::enforce_speed_limit() 62 2.531e-05 2.783e-05 3.315e-05 0.00% FabArrayBase::CPC::define() 2 2.154e-05 2.506e-05 3.063e-05 0.00% Amr::initSubcycle() 1 8.912e-06 1.121e-05 1.675e-05 0.00% Gravity::swapTimeLevels() 10 8.797e-06 1.147e-05 1.608e-05 0.00% Castro::FluxRegCrseInit 10 8.167e-06 1.131e-05 1.591e-05 0.00% Gravity::set_mass_offset() 10 9.394e-06 1.046e-05 1.212e-05 0.00% Castro::create_source_corrector() 10 8.219e-06 9.361e-06 1.154e-05 0.00% Castro::FluxRegFineAdd() 10 2.031e-06 3.644e-06 8.052e-06 0.00% Castro::retry_advance_ctu() 10 4.829e-06 5.339e-06 6.121e-06 0.00% DistributionMapping::Distribute() 1 8.86e-07 1.006e-06 1.251e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 40 B 62 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-18-gf22705a9a2c6) finalized