MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-22-g82e38a8f5ebe) initialized Starting run at 05:41:52 UTC on 2023-03-23. Successfully read inputs file ... Castro git describe: 23.03-14-g7e0f49884 AMReX git describe: 23.03-22-g82e38a8f5 Microphysics git describe: 23.03-20-g47547e7e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018749327 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.380775563 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.356596461 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329223067 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328137998 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357649849 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328897022 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313462147 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313338523 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311613401 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312438827 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010428293 seconds Ending run at 05:41:55 UTC on 2023-03-23. Run time = 3.606257365 Run time without initialization = 3.35008325 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.605 ... 3.606 ... 3.606 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3105 2.3497 2.3914 66.31% Gravity::make_radial_gravity() 21 0.3399 0.3501 0.3637 10.09% Castro::estTimeStep() 21 0.02156 0.09666 0.1684 4.67% Castro::initData() 1 0.0385 0.101 0.1636 4.54% Castro::do_advance_ctu() 10 0.04645 0.08685 0.1263 3.50% FabArray::ParallelCopy_finish() 41 0.04087 0.05247 0.0848 2.35% amrex::Copy() 193 0.05927 0.06983 0.0742 2.06% FabArray::setVal() 143 0.05478 0.06587 0.07344 2.04% Castro::reset_internal_energy(Fab) 1008 0.04849 0.05084 0.05576 1.55% Castro::normalize_species() 62 0.04167 0.04295 0.04477 1.24% FabArray::ParallelCopy_nowait() 41 0.03714 0.0411 0.04286 1.19% StateData::FillBoundary(geom) 41 0.03335 0.03551 0.03883 1.08% FillPatchIterator::Initialize 41 0.02953 0.03394 0.0378 1.05% Gravity::interpolate_monopole_grav() 21 0.02808 0.02853 0.02923 0.81% Castro::construct_new_gravity_source() 10 0.02327 0.02564 0.02869 0.80% Castro::computeTemp() 63 0.0176 0.01986 0.02193 0.61% VisMF::Write(FabArray) 2 0.01346 0.01485 0.01941 0.54% Castro::initialize_do_advance() 10 0.01264 0.01697 0.01873 0.52% Amr::writePlotFile() 2 0.007782 0.01251 0.01474 0.41% FabArray::Saxpy() 20 0.0124 0.01383 0.01462 0.41% Castro::initialize_advance() 10 0.00408 0.01005 0.01355 0.38% MultiFab::contains_nan() 20 0.01008 0.01103 0.01235 0.34% FabArray::setDomainBndry() 41 0.00892 0.01087 0.0122 0.34% Castro::construct_old_gravity_source() 10 0.007589 0.01019 0.01084 0.30% Castro::initMFs() 1 0.006788 0.008571 0.01015 0.28% StateData::define() 4 0.005843 0.007252 0.008523 0.24% Castro::swap_state_time_levels() 10 0.003683 0.004999 0.006875 0.19% main() 1 0.0051 0.006215 0.006828 0.19% Castro::enforce_min_density() 62 0.005756 0.006126 0.006615 0.18% Castro::construct_new_source() 50 0.005682 0.0062 0.006517 0.18% Gravity::get_new_grav_vector() 11 0.002963 0.003628 0.004301 0.12% Amr::coarseTimeStep() 10 0.001138 0.00221 0.003006 0.08% Gravity::get_old_grav_vector() 10 0.001754 0.002358 0.002803 0.08% Castro::buildMetrics() 1 0.001636 0.002048 0.002394 0.07% Castro::finalize_do_advance() 10 0.0006485 0.001585 0.001984 0.06% Castro::expand_state() 10 0.0006709 0.0007946 0.001031 0.03% Amr::InitAmr() 1 0.0002748 0.0004113 0.0005031 0.01% Amr::timeStep() 10 0.0001584 0.000234 0.0004341 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002907 0.0003073 0.0003321 0.01% DistributionMapping::LeastUsedCPUs() 1 7.109e-06 0.0001199 0.0002714 0.01% Castro::clean_state() 62 0.0001454 0.0001656 0.0001808 0.01% Castro::enforce_consistent_e() 1 7.801e-05 0.000116 0.0001593 0.00% StateDataPhysBCFunct::() 41 8.783e-05 9.659e-05 0.000122 0.00% Castro::finalize_advance() 10 9.147e-05 0.0001031 0.0001207 0.00% Castro::Castro() 1 5.157e-05 6.918e-05 8.734e-05 0.00% FabArray::ParallelCopy() 41 6.658e-05 7.232e-05 8.366e-05 0.00% Castro::do_new_sources() 10 5.332e-05 6.568e-05 8.019e-05 0.00% Castro::construct_old_source() 50 4.291e-05 6.708e-05 7.763e-05 0.00% Amr::FinalizeInit() 1 4.267e-06 1.368e-05 7.248e-05 0.00% Castro::do_old_sources() 10 4.223e-05 6.095e-05 7.1e-05 0.00% FillPatchSingleLevel 41 6.072e-05 6.489e-05 6.98e-05 0.00% FabArrayBase::getCPC() 41 4.695e-05 5.613e-05 6.797e-05 0.00% Castro::advance() 10 3.774e-05 4.45e-05 6.703e-05 0.00% Amr::writeSmallPlotFile() 1 2.524e-05 4.141e-05 5.61e-05 0.00% Castro::subcycle_advance_ctu() 10 4.328e-05 4.621e-05 5.361e-05 0.00% Castro::apply_source_to_state() 20 4.067e-05 4.556e-05 5.156e-05 0.00% Castro::construct_new_gravity() 10 3.214e-05 4.057e-05 4.861e-05 0.00% Castro::construct_old_gravity() 10 3.189e-05 4.068e-05 4.614e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.955e-05 3.299e-05 4.347e-05 0.00% Amr::defBaseLevel() 1 1.798e-05 2.581e-05 3.304e-05 0.00% Castro::enforce_speed_limit() 62 2.563e-05 2.864e-05 3.181e-05 0.00% FabArrayBase::CPC::define() 2 2.231e-05 2.553e-05 3.155e-05 0.00% Castro::check_for_nan() 20 1.892e-05 2.199e-05 2.483e-05 0.00% Gravity::swapTimeLevels() 10 6.939e-06 1.303e-05 2.005e-05 0.00% Castro::post_timestep() 10 1.235e-05 1.588e-05 1.967e-05 0.00% Amr::initSubcycle() 1 8.715e-06 1.298e-05 1.695e-05 0.00% Gravity::set_mass_offset() 10 1.02e-05 1.198e-05 1.672e-05 0.00% Castro::create_source_corrector() 10 7.847e-06 9.295e-06 1.063e-05 0.00% Castro::FluxRegCrseInit 10 7.454e-06 8.742e-06 9.456e-06 0.00% Castro::computeNewDt() 9 7.41e-06 7.971e-06 8.538e-06 0.00% Castro::post_regrid() 1 2.531e-06 3.592e-06 6.737e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.742e-06 4.644e-06 6.382e-06 0.00% Castro::retry_advance_ctu() 10 4.459e-06 5.666e-06 6.367e-06 0.00% Castro::computeInitialDt() 2 3.746e-06 4.512e-06 6.365e-06 0.00% Amr::InitializeInit() 1 2.138e-06 2.828e-06 5.508e-06 0.00% Castro::post_init() 1 2.774e-06 3.739e-06 4.978e-06 0.00% Castro::FluxRegFineAdd() 10 1.968e-06 2.562e-06 3.365e-06 0.00% Amr::init() 1 1.709e-06 2.257e-06 2.746e-06 0.00% Amr::initialInit() 1 1.4e-06 1.738e-06 2.226e-06 0.00% DistributionMapping::Distribute() 1 1.038e-06 1.249e-06 1.441e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.605 3.606 3.606 100.00% Amr::coarseTimeStep() 10 3.333 3.333 3.333 92.42% Amr::timeStep() 10 3.32 3.321 3.322 92.11% Castro::advance() 10 3.304 3.305 3.305 91.65% Castro::subcycle_advance_ctu() 10 3.222 3.231 3.244 89.94% Castro::do_advance_ctu() 10 3.222 3.231 3.243 89.94% Castro::construct_ctu_hydro_source() 10 2.31 2.35 2.391 66.31% Gravity::make_radial_gravity() 21 0.3559 0.3659 0.3769 10.45% Amr::init() 1 0.2555 0.2556 0.2557 7.09% Amr::initialInit() 1 0.2357 0.2365 0.2371 6.58% Gravity::get_new_grav_vector() 11 0.2324 0.2348 0.2362 6.55% Castro::construct_old_gravity() 10 0.2056 0.2144 0.2222 6.16% Gravity::get_old_grav_vector() 10 0.2048 0.2137 0.2216 6.15% Castro::construct_new_gravity() 10 0.1939 0.1961 0.1973 5.47% FillPatchIterator::Initialize 41 0.1647 0.1742 0.1959 5.43% Amr::InitializeInit() 1 0.05861 0.1258 0.193 5.35% Amr::defBaseLevel() 1 0.05861 0.1258 0.193 5.35% Amr::FinalizeInit() 1 0.04412 0.1106 0.1771 4.91% Castro::initialize_do_advance() 10 0.1609 0.1677 0.1753 4.86% Castro::initData() 1 0.04215 0.1058 0.1696 4.70% Castro::estTimeStep() 21 0.02156 0.09666 0.1684 4.67% FillPatchSingleLevel 41 0.1181 0.1294 0.1574 4.37% Castro::computeInitialDt() 2 0.003258 0.07053 0.1379 3.82% Castro::expand_state() 10 0.1108 0.1202 0.1322 3.66% Castro::clean_state() 62 0.114 0.119 0.1279 3.55% FabArray::ParallelCopy() 41 0.08282 0.09373 0.1221 3.39% FabArray::ParallelCopy_finish() 41 0.04087 0.05247 0.0848 2.35% Castro::initialize_advance() 10 0.0566 0.07034 0.07926 2.20% Castro::computeTemp() 63 0.06639 0.07101 0.07801 2.16% amrex::Copy() 193 0.05927 0.06983 0.0742 2.06% FabArray::setVal() 143 0.05478 0.06587 0.07344 2.04% Castro::do_new_sources() 10 0.06005 0.06486 0.07251 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04879 0.05115 0.05608 1.56% Castro::reset_internal_energy(Fab) 1008 0.04849 0.05084 0.05576 1.55% Castro::do_old_sources() 10 0.03979 0.0453 0.04698 1.30% Castro::normalize_species() 62 0.04167 0.04295 0.04477 1.24% FabArray::ParallelCopy_nowait() 41 0.03722 0.04119 0.04294 1.19% Castro::post_init() 1 0.03926 0.03972 0.04024 1.12% StateDataPhysBCFunct::() 41 0.03345 0.03561 0.03892 1.08% StateData::FillBoundary(geom) 41 0.03335 0.03551 0.03883 1.08% Castro::construct_new_source() 50 0.02928 0.03184 0.0352 0.98% Amr::writePlotFile() 2 0.02887 0.02966 0.0306 0.85% Gravity::interpolate_monopole_grav() 21 0.02808 0.02853 0.02923 0.81% Castro::construct_new_gravity_source() 10 0.02327 0.02564 0.02869 0.80% VisMF::Write(FabArray) 2 0.01346 0.01485 0.01941 0.54% Castro::post_timestep() 10 0.01552 0.01586 0.01633 0.45% Castro::Castro() 1 0.01021 0.01259 0.01485 0.41% Castro::apply_source_to_state() 20 0.01244 0.01387 0.01467 0.41% FabArray::Saxpy() 20 0.0124 0.01383 0.01462 0.41% Castro::check_for_nan() 20 0.0101 0.01105 0.01237 0.34% MultiFab::contains_nan() 20 0.01008 0.01103 0.01235 0.34% FabArray::setDomainBndry() 41 0.00892 0.01087 0.0122 0.34% Castro::construct_old_source() 50 0.007632 0.01025 0.01091 0.30% Castro::construct_old_gravity_source() 10 0.007589 0.01019 0.01084 0.30% Castro::initMFs() 1 0.006788 0.008571 0.01015 0.28% AmrLevel::AmrLevel(dm) 1 0.005871 0.007285 0.008562 0.24% StateData::define() 4 0.005843 0.007252 0.008523 0.24% Castro::computeNewDt() 9 0.008367 0.008377 0.008383 0.23% Castro::swap_state_time_levels() 10 0.003683 0.004999 0.006875 0.19% Castro::enforce_min_density() 62 0.005756 0.006126 0.006615 0.18% Castro::finalize_advance() 10 0.002956 0.003427 0.004004 0.11% Castro::post_regrid() 1 0.001571 0.002046 0.002978 0.08% Castro::buildMetrics() 1 0.001749 0.002214 0.002604 0.07% Castro::finalize_do_advance() 10 0.0006485 0.001585 0.001984 0.06% Amr::InitAmr() 1 0.0002839 0.0004242 0.00052 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.204e-05 0.0001258 0.0002792 0.01% DistributionMapping::LeastUsedCPUs() 1 7.109e-06 0.0001199 0.0002714 0.01% Castro::enforce_consistent_e() 1 7.801e-05 0.000116 0.0001593 0.00% FabArrayBase::getCPC() 41 6.973e-05 8.166e-05 9.488e-05 0.00% Amr::writeSmallPlotFile() 1 2.524e-05 4.141e-05 5.61e-05 0.00% Castro::enforce_speed_limit() 62 2.563e-05 2.864e-05 3.181e-05 0.00% FabArrayBase::CPC::define() 2 2.231e-05 2.553e-05 3.155e-05 0.00% Gravity::swapTimeLevels() 10 6.939e-06 1.303e-05 2.005e-05 0.00% Amr::initSubcycle() 1 8.715e-06 1.298e-05 1.695e-05 0.00% Gravity::set_mass_offset() 10 1.02e-05 1.198e-05 1.672e-05 0.00% Castro::create_source_corrector() 10 7.847e-06 9.295e-06 1.063e-05 0.00% Castro::FluxRegCrseInit 10 7.454e-06 8.742e-06 9.456e-06 0.00% Castro::retry_advance_ctu() 10 4.459e-06 5.666e-06 6.367e-06 0.00% Castro::FluxRegFineAdd() 10 1.968e-06 2.562e-06 3.365e-06 0.00% DistributionMapping::Distribute() 1 1.038e-06 1.249e-06 1.441e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-22-g82e38a8f5ebe) finalized