MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-23-g7aad6ca7f649) initialized Starting run at 16:40:22 UTC on 2023-03-24. Successfully read inputs file ... Castro git describe: 23.03-17-g83eb16f0d AMReX git describe: 23.03-23-g7aad6ca7f Microphysics git describe: 23.03-21-gfc700fa2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015695845 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.350278021 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.358626817 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334714863 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332674291 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360953638 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.333437896 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314318291 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314501908 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314361388 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315398496 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010521835 seconds Ending run at 16:40:26 UTC on 2023-03-24. Run time = 3.590825205 Run time without initialization = 3.347279807 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.589 ... 3.591 ... 3.591 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2911 2.3476 2.4356 67.83% Gravity::make_radial_gravity() 21 0.3231 0.3349 0.3538 9.85% Castro::estTimeStep() 21 0.02091 0.1057 0.1619 4.51% Castro::do_advance_ctu() 10 0.00947 0.1008 0.1573 4.38% Castro::initData() 1 0.03841 0.08628 0.1557 4.33% FabArray::ParallelCopy_finish() 41 0.0374 0.04862 0.08199 2.28% FabArray::setVal() 143 0.05837 0.06716 0.07846 2.18% amrex::Copy() 193 0.05845 0.071 0.07824 2.18% Castro::reset_internal_energy(Fab) 1008 0.04801 0.05067 0.05443 1.52% Castro::normalize_species() 62 0.04113 0.04246 0.04378 1.22% FabArray::ParallelCopy_nowait() 41 0.03701 0.04156 0.04325 1.20% StateData::FillBoundary(geom) 41 0.03165 0.03508 0.03778 1.05% FillPatchIterator::Initialize 41 0.02871 0.033 0.03566 0.99% Gravity::interpolate_monopole_grav() 21 0.02819 0.02891 0.03066 0.85% Castro::construct_new_gravity_source() 10 0.02329 0.02589 0.02956 0.82% Castro::computeTemp() 63 0.01942 0.0203 0.02157 0.60% Castro::initialize_do_advance() 10 0.01215 0.01691 0.01912 0.53% VisMF::Write(FabArray) 2 0.01345 0.01402 0.01661 0.46% FabArray::Saxpy() 20 0.01222 0.01388 0.01506 0.42% Castro::initialize_advance() 10 0.004101 0.01015 0.01339 0.37% FabArray::setDomainBndry() 41 0.00883 0.01122 0.01245 0.35% MultiFab::contains_nan() 20 0.01006 0.01125 0.01236 0.34% Amr::writePlotFile() 2 0.007089 0.009875 0.01175 0.33% Castro::construct_old_gravity_source() 10 0.007516 0.01033 0.01106 0.31% Castro::initMFs() 1 0.00692 0.008028 0.01061 0.30% StateData::define() 4 0.00575 0.006631 0.008488 0.24% main() 1 0.005218 0.00635 0.006802 0.19% Castro::construct_new_source() 50 0.005776 0.006231 0.006519 0.18% Castro::enforce_min_density() 62 0.005901 0.006223 0.006489 0.18% Castro::swap_state_time_levels() 10 0.003388 0.004395 0.004752 0.13% Gravity::get_new_grav_vector() 11 0.003129 0.003758 0.004373 0.12% Gravity::get_old_grav_vector() 10 0.001734 0.002409 0.002893 0.08% Amr::coarseTimeStep() 10 0.001297 0.001876 0.002478 0.07% Castro::buildMetrics() 1 0.001613 0.001858 0.002451 0.07% Castro::finalize_do_advance() 10 0.0006675 0.001607 0.002002 0.06% Castro::expand_state() 10 0.0005994 0.0008355 0.001169 0.03% Amr::InitAmr() 1 0.00027 0.0003592 0.0006662 0.02% DistributionMapping::LeastUsedCPUs() 1 6.956e-06 0.000349 0.0004456 0.01% Amr::timeStep() 10 0.0001891 0.0002453 0.0004418 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002712 0.000292 0.0003129 0.01% Castro::clean_state() 62 0.0001455 0.0001606 0.0001821 0.01% Castro::enforce_consistent_e() 1 7.931e-05 0.0001027 0.0001421 0.00% Castro::finalize_advance() 10 7.93e-05 0.000101 0.0001195 0.00% StateDataPhysBCFunct::() 41 7.894e-05 8.799e-05 9.677e-05 0.00% FabArray::ParallelCopy() 41 6.809e-05 7.442e-05 8.297e-05 0.00% Castro::do_old_sources() 10 5.062e-05 6.263e-05 8.166e-05 0.00% Castro::Castro() 1 5.473e-05 6.497e-05 8.081e-05 0.00% Castro::construct_old_source() 50 4.5e-05 6.449e-05 8.049e-05 0.00% FillPatchSingleLevel 41 6.095e-05 6.71e-05 7.244e-05 0.00% Castro::do_new_sources() 10 5.289e-05 6.331e-05 7.09e-05 0.00% Amr::writeSmallPlotFile() 1 2.513e-05 4.3e-05 6.432e-05 0.00% Amr::FinalizeInit() 1 3.706e-06 1.167e-05 6.32e-05 0.00% FabArrayBase::getCPC() 41 4.285e-05 5.557e-05 6.254e-05 0.00% Castro::subcycle_advance_ctu() 10 4.175e-05 4.821e-05 5.625e-05 0.00% Castro::apply_source_to_state() 20 4.116e-05 4.739e-05 5.228e-05 0.00% Castro::construct_new_gravity() 10 3.241e-05 3.702e-05 4.887e-05 0.00% Castro::advance() 10 3.623e-05 4.245e-05 4.872e-05 0.00% Castro::construct_old_gravity() 10 3.693e-05 4.093e-05 4.787e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.732e-05 3.923e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.413e-05 2.434e-05 3.296e-05 0.00% Amr::defBaseLevel() 1 1.709e-05 2.507e-05 3.133e-05 0.00% Castro::check_for_nan() 20 2.166e-05 2.499e-05 2.958e-05 0.00% Castro::enforce_speed_limit() 62 2.457e-05 2.661e-05 2.834e-05 0.00% Castro::post_timestep() 10 1.258e-05 1.488e-05 1.787e-05 0.00% Gravity::swapTimeLevels() 10 6.715e-06 1.152e-05 1.759e-05 0.00% Amr::initSubcycle() 1 8.781e-06 1.098e-05 1.572e-05 0.00% Gravity::set_mass_offset() 10 9.268e-06 1.073e-05 1.21e-05 0.00% Castro::FluxRegCrseInit 10 7.857e-06 9.543e-06 1.083e-05 0.00% Castro::computeNewDt() 9 7.624e-06 8.793e-06 1.072e-05 0.00% Castro::create_source_corrector() 10 6.817e-06 8.698e-06 1e-05 0.00% Castro::post_init() 1 2.559e-06 5.18e-06 9.653e-06 0.00% Castro::retry_advance_ctu() 10 4.77e-06 5.704e-06 7.493e-06 0.00% Amr::InitializeInit() 1 1.967e-06 2.828e-06 6.462e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.657e-06 4.292e-06 5.29e-06 0.00% Castro::computeInitialDt() 2 3.076e-06 4.172e-06 5.163e-06 0.00% Castro::post_regrid() 1 2.503e-06 2.915e-06 3.117e-06 0.00% Castro::FluxRegFineAdd() 10 1.894e-06 2.301e-06 2.956e-06 0.00% Amr::init() 1 1.497e-06 1.944e-06 2.33e-06 0.00% Amr::initialInit() 1 1.091e-06 1.634e-06 2.26e-06 0.00% DistributionMapping::Distribute() 1 1.009e-06 1.108e-06 1.4e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.589 3.59 3.591 100.00% Amr::coarseTimeStep() 10 3.33 3.33 3.33 92.74% Amr::timeStep() 10 3.318 3.319 3.319 92.43% Castro::advance() 10 3.302 3.302 3.303 91.97% Castro::subcycle_advance_ctu() 10 3.222 3.229 3.241 90.27% Castro::do_advance_ctu() 10 3.222 3.229 3.241 90.27% Castro::construct_ctu_hydro_source() 10 2.291 2.348 2.436 67.83% Gravity::make_radial_gravity() 21 0.3381 0.3512 0.3672 10.23% Amr::init() 1 0.2427 0.243 0.2431 6.77% Gravity::get_new_grav_vector() 11 0.2315 0.2338 0.2361 6.57% Amr::initialInit() 1 0.2268 0.2271 0.2276 6.34% Castro::construct_old_gravity() 10 0.1919 0.2009 0.2151 5.99% Gravity::get_old_grav_vector() 10 0.1911 0.2002 0.2145 5.97% Castro::construct_new_gravity() 10 0.1943 0.1959 0.1975 5.50% FillPatchIterator::Initialize 41 0.1544 0.1698 0.1885 5.25% Amr::InitializeInit() 1 0.05925 0.1095 0.1843 5.13% Amr::defBaseLevel() 1 0.05925 0.1095 0.1843 5.13% Castro::initialize_do_advance() 10 0.1552 0.1636 0.17 4.74% Amr::FinalizeInit() 1 0.04308 0.1176 0.1675 4.67% Castro::estTimeStep() 21 0.02091 0.1057 0.1619 4.51% Castro::initData() 1 0.04227 0.09054 0.1608 4.48% FillPatchSingleLevel 41 0.115 0.1256 0.151 4.20% Castro::computeInitialDt() 2 0.002625 0.07768 0.128 3.57% Castro::clean_state() 62 0.1145 0.119 0.1253 3.49% Castro::expand_state() 10 0.1062 0.1166 0.1237 3.45% FabArray::ParallelCopy() 41 0.0807 0.09034 0.1192 3.32% FabArray::ParallelCopy_finish() 41 0.0374 0.04862 0.08199 2.28% FabArray::setVal() 143 0.05837 0.06716 0.07846 2.18% amrex::Copy() 193 0.05845 0.071 0.07824 2.18% Castro::initialize_advance() 10 0.05631 0.07012 0.07701 2.14% Castro::computeTemp() 63 0.0677 0.07127 0.07631 2.12% Castro::do_new_sources() 10 0.06036 0.06658 0.07585 2.11% Castro::reset_internal_energy(MultiFab) 63 0.04828 0.05097 0.05473 1.52% Castro::reset_internal_energy(Fab) 1008 0.04801 0.05067 0.05443 1.52% Castro::do_old_sources() 10 0.04074 0.04537 0.04685 1.30% Castro::normalize_species() 62 0.04113 0.04246 0.04378 1.22% FabArray::ParallelCopy_nowait() 41 0.0371 0.04164 0.04333 1.21% Castro::post_init() 1 0.0381 0.03903 0.03992 1.11% StateDataPhysBCFunct::() 41 0.03173 0.03517 0.03787 1.05% StateData::FillBoundary(geom) 41 0.03165 0.03508 0.03778 1.05% Castro::construct_new_source() 50 0.02951 0.03212 0.03608 1.00% Gravity::interpolate_monopole_grav() 21 0.02819 0.02891 0.03066 0.85% Castro::construct_new_gravity_source() 10 0.02329 0.02589 0.02956 0.82% Amr::writePlotFile() 2 0.02601 0.02656 0.02698 0.75% VisMF::Write(FabArray) 2 0.01345 0.01402 0.01661 0.46% Castro::post_timestep() 10 0.01597 0.01618 0.01649 0.46% Castro::apply_source_to_state() 20 0.01226 0.01393 0.01511 0.42% FabArray::Saxpy() 20 0.01222 0.01388 0.01506 0.42% Castro::Castro() 1 0.01071 0.01192 0.01491 0.42% FabArray::setDomainBndry() 41 0.00883 0.01122 0.01245 0.35% Castro::check_for_nan() 20 0.01009 0.01128 0.01239 0.35% MultiFab::contains_nan() 20 0.01006 0.01125 0.01236 0.34% Castro::construct_old_source() 50 0.007561 0.0104 0.01113 0.31% Castro::construct_old_gravity_source() 10 0.007516 0.01033 0.01106 0.31% Castro::initMFs() 1 0.00692 0.008028 0.01061 0.30% AmrLevel::AmrLevel(dm) 1 0.005764 0.006655 0.008516 0.24% StateData::define() 4 0.00575 0.006631 0.008488 0.24% Castro::computeNewDt() 9 0.008461 0.008473 0.008478 0.24% Castro::enforce_min_density() 62 0.005901 0.006223 0.006489 0.18% Castro::swap_state_time_levels() 10 0.003388 0.004395 0.004752 0.13% Castro::finalize_advance() 10 0.003102 0.003474 0.003894 0.11% Castro::post_regrid() 1 0.001527 0.001941 0.002923 0.08% Castro::buildMetrics() 1 0.00173 0.002006 0.002662 0.07% Castro::finalize_do_advance() 10 0.0006675 0.001607 0.002002 0.06% Amr::InitAmr() 1 0.0002796 0.0003702 0.000682 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.178e-05 0.0003544 0.000452 0.01% DistributionMapping::LeastUsedCPUs() 1 6.956e-06 0.000349 0.0004456 0.01% Castro::enforce_consistent_e() 1 7.931e-05 0.0001027 0.0001421 0.00% FabArrayBase::getCPC() 41 7.064e-05 8.288e-05 0.0001018 0.00% Amr::writeSmallPlotFile() 1 2.513e-05 4.3e-05 6.432e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.732e-05 3.923e-05 0.00% Castro::enforce_speed_limit() 62 2.457e-05 2.661e-05 2.834e-05 0.00% Gravity::swapTimeLevels() 10 6.715e-06 1.152e-05 1.759e-05 0.00% Amr::initSubcycle() 1 8.781e-06 1.098e-05 1.572e-05 0.00% Gravity::set_mass_offset() 10 9.268e-06 1.073e-05 1.21e-05 0.00% Castro::FluxRegCrseInit 10 7.857e-06 9.543e-06 1.083e-05 0.00% Castro::create_source_corrector() 10 6.817e-06 8.698e-06 1e-05 0.00% Castro::retry_advance_ctu() 10 4.77e-06 5.704e-06 7.493e-06 0.00% Castro::FluxRegFineAdd() 10 1.894e-06 2.301e-06 2.956e-06 0.00% DistributionMapping::Distribute() 1 1.009e-06 1.108e-06 1.4e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-23-g7aad6ca7f649) finalized