MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-23-g7aad6ca7f649) initialized Starting run at 17:51:45 UTC on 2023-03-24. Successfully read inputs file ... Castro git describe: 23.03-18-g1756044af AMReX git describe: 23.03-23-g7aad6ca7f Microphysics git describe: 23.03-21-gfc700fa2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015325152 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366782536 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.336178923 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.378915147 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33170802 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361722407 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334543785 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312618744 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315570002 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313981635 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314050215 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.059531007 seconds Ending run at 17:51:49 UTC on 2023-03-24. Run time = 3.61667965 Run time without initialization = 3.433051088 Average number of zones advanced per microsecond: 0.764 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.616 ... 3.616 ... 3.617 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2738 2.3504 2.4514 67.78% Gravity::make_radial_gravity() 21 0.3141 0.3287 0.3451 9.54% Castro::do_advance_ctu() 10 0.02513 0.1305 0.2124 5.87% Castro::initData() 1 0.03843 0.07667 0.1164 3.22% Castro::estTimeStep() 21 0.02788 0.07021 0.1139 3.15% FabArray::setVal() 143 0.06276 0.07079 0.08079 2.23% amrex::Copy() 193 0.05873 0.07047 0.07771 2.15% FabArray::ParallelCopy_finish() 41 0.03706 0.04603 0.06846 1.89% Amr::writePlotFile() 2 0.05607 0.05814 0.05865 1.62% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04964 0.05176 1.43% FabArray::ParallelCopy_nowait() 41 0.0355 0.04147 0.04324 1.20% Castro::normalize_species() 62 0.04149 0.04223 0.04279 1.18% StateData::FillBoundary(geom) 41 0.03199 0.03498 0.03787 1.05% FillPatchIterator::Initialize 41 0.02872 0.03305 0.03564 0.99% Castro::construct_new_gravity_source() 10 0.02305 0.02584 0.02964 0.82% Gravity::interpolate_monopole_grav() 21 0.02805 0.02853 0.02918 0.81% Castro::computeTemp() 63 0.0189 0.01963 0.02059 0.57% Castro::initialize_do_advance() 10 0.01182 0.01688 0.01933 0.53% VisMF::Write(FabArray) 2 0.01339 0.01395 0.01678 0.46% FabArray::Saxpy() 20 0.01219 0.01364 0.01462 0.40% Castro::initialize_advance() 10 0.008328 0.01111 0.01428 0.39% FabArray::setDomainBndry() 41 0.008966 0.01124 0.01276 0.35% MultiFab::contains_nan() 20 0.01018 0.01122 0.01244 0.34% Castro::construct_old_gravity_source() 10 0.007196 0.01002 0.01062 0.29% Castro::initMFs() 1 0.006922 0.007389 0.008697 0.24% main() 1 0.005505 0.00635 0.006774 0.19% StateData::define() 4 0.005713 0.00593 0.006539 0.18% Castro::construct_new_source() 50 0.005482 0.00613 0.006536 0.18% Castro::enforce_min_density() 62 0.005724 0.006002 0.006224 0.17% Gravity::get_new_grav_vector() 11 0.002978 0.003803 0.005505 0.15% Castro::swap_state_time_levels() 10 0.002163 0.004445 0.004904 0.14% Amr::coarseTimeStep() 10 0.001723 0.002328 0.002895 0.08% Gravity::get_old_grav_vector() 10 0.001678 0.002298 0.002636 0.07% Castro::buildMetrics() 1 0.001602 0.001686 0.001881 0.05% Castro::finalize_do_advance() 10 0.0006566 0.001476 0.001743 0.05% Castro::expand_state() 10 0.0006957 0.000836 0.001044 0.03% Amr::InitAmr() 1 0.0002763 0.0003119 0.0004792 0.01% Amr::timeStep() 10 0.000166 0.000225 0.0004143 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002718 0.0002822 0.0003027 0.01% DistributionMapping::LeastUsedCPUs() 1 8.25e-06 0.0001696 0.0001974 0.01% Castro::clean_state() 62 0.0001461 0.0001629 0.0001763 0.00% Castro::finalize_advance() 10 7.654e-05 0.0001005 0.0001218 0.00% Castro::enforce_consistent_e() 1 7.678e-05 8.834e-05 0.0001012 0.00% StateDataPhysBCFunct::() 41 7.884e-05 8.6e-05 9.598e-05 0.00% FabArray::ParallelCopy() 41 6.821e-05 7.75e-05 9.343e-05 0.00% Castro::construct_old_source() 50 4.929e-05 6.641e-05 8.925e-05 0.00% FillPatchSingleLevel 41 6.101e-05 6.779e-05 8.586e-05 0.00% Castro::Castro() 1 5.524e-05 6.661e-05 8.072e-05 0.00% Amr::FinalizeInit() 1 3.638e-06 1.397e-05 7.925e-05 0.00% Castro::do_old_sources() 10 4.984e-05 6.288e-05 7.872e-05 0.00% Castro::do_new_sources() 10 5.306e-05 6.242e-05 7.512e-05 0.00% FabArrayBase::getCPC() 41 4.217e-05 5.548e-05 6.85e-05 0.00% Amr::writeSmallPlotFile() 1 2.582e-05 4.365e-05 6.378e-05 0.00% Castro::apply_source_to_state() 20 3.721e-05 4.677e-05 5.485e-05 0.00% Castro::subcycle_advance_ctu() 10 3.19e-05 4.29e-05 5.346e-05 0.00% Castro::advance() 10 3.484e-05 4.329e-05 4.896e-05 0.00% Castro::construct_new_gravity() 10 3.424e-05 3.907e-05 4.776e-05 0.00% Castro::construct_old_gravity() 10 3.5e-05 4.091e-05 4.7e-05 0.00% Amr::defBaseLevel() 1 1.758e-05 2.815e-05 4.468e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.744e-05 2.483e-05 3.463e-05 0.00% FabArrayBase::CPC::define() 2 2.087e-05 2.456e-05 2.916e-05 0.00% Castro::enforce_speed_limit() 62 2.389e-05 2.633e-05 2.902e-05 0.00% Castro::check_for_nan() 20 2.156e-05 2.402e-05 2.736e-05 0.00% Castro::FluxRegCrseInit 10 6.837e-06 1.008e-05 1.982e-05 0.00% Castro::post_timestep() 10 1.179e-05 1.489e-05 1.794e-05 0.00% Gravity::swapTimeLevels() 10 1.061e-05 1.163e-05 1.384e-05 0.00% Gravity::set_mass_offset() 10 9.403e-06 1.067e-05 1.146e-05 0.00% Amr::initSubcycle() 1 8.599e-06 9.533e-06 1.043e-05 0.00% Castro::post_init() 1 3.205e-06 5.206e-06 1.034e-05 0.00% Castro::create_source_corrector() 10 8.352e-06 9.053e-06 1.024e-05 0.00% Castro::computeNewDt() 9 7.586e-06 8.33e-06 9.761e-06 0.00% Castro::retry_advance_ctu() 10 4.791e-06 5.468e-06 6.251e-06 0.00% Amr::InitializeInit() 1 1.996e-06 2.648e-06 5.801e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.492e-06 4.192e-06 5.373e-06 0.00% Castro::computeInitialDt() 2 3.548e-06 4.323e-06 5.174e-06 0.00% Castro::post_regrid() 1 1.721e-06 2.682e-06 4.682e-06 0.00% Castro::FluxRegFineAdd() 10 1.858e-06 2.304e-06 2.678e-06 0.00% Amr::init() 1 1.825e-06 2.039e-06 2.331e-06 0.00% Amr::initialInit() 1 1.233e-06 1.587e-06 1.893e-06 0.00% DistributionMapping::Distribute() 1 9.56e-07 1.107e-06 1.367e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.616 3.616 3.617 100.00% Amr::coarseTimeStep() 10 3.367 3.367 3.367 93.09% Amr::timeStep() 10 3.354 3.355 3.356 92.78% Castro::advance() 10 3.338 3.339 3.339 92.33% Castro::subcycle_advance_ctu() 10 3.256 3.262 3.265 90.29% Castro::do_advance_ctu() 10 3.256 3.262 3.265 90.29% Castro::construct_ctu_hydro_source() 10 2.274 2.35 2.451 67.78% Gravity::make_radial_gravity() 21 0.3294 0.3449 0.3594 9.94% Gravity::get_new_grav_vector() 11 0.2228 0.225 0.2272 6.28% Castro::construct_old_gravity() 10 0.191 0.202 0.2143 5.93% Gravity::get_old_grav_vector() 10 0.1902 0.2013 0.2137 5.91% Castro::construct_new_gravity() 10 0.1988 0.2 0.2013 5.56% Amr::init() 1 0.183 0.1832 0.1832 5.07% FillPatchIterator::Initialize 41 0.1564 0.1671 0.1756 4.85% Castro::initialize_do_advance() 10 0.1531 0.1614 0.17 4.70% Amr::initialInit() 1 0.1675 0.1679 0.1681 4.65% Amr::InitializeInit() 1 0.05974 0.09823 0.139 3.84% Amr::defBaseLevel() 1 0.05973 0.09823 0.139 3.84% FillPatchSingleLevel 41 0.1164 0.1228 0.1363 3.77% Castro::expand_state() 10 0.1045 0.1145 0.1235 3.41% Castro::clean_state() 62 0.1152 0.117 0.1205 3.33% Castro::initData() 1 0.04254 0.08061 0.12 3.32% Castro::estTimeStep() 21 0.02788 0.07021 0.1139 3.15% Amr::FinalizeInit() 1 0.02879 0.06968 0.1084 3.00% FabArray::ParallelCopy() 41 0.0804 0.08766 0.1041 2.88% Castro::computeInitialDt() 2 0.002018 0.04276 0.08128 2.25% FabArray::setVal() 143 0.06276 0.07079 0.08079 2.23% Castro::initialize_advance() 10 0.06989 0.07322 0.07907 2.19% amrex::Copy() 193 0.05873 0.07047 0.07771 2.15% Castro::do_new_sources() 10 0.06037 0.06627 0.07517 2.08% Amr::writePlotFile() 2 0.07468 0.07486 0.0751 2.08% Castro::computeTemp() 63 0.06721 0.06954 0.07228 2.00% FabArray::ParallelCopy_finish() 41 0.03706 0.04603 0.06846 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04811 0.04992 0.05204 1.44% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04964 0.05176 1.43% Castro::do_old_sources() 10 0.03938 0.04487 0.04617 1.28% FabArray::ParallelCopy_nowait() 41 0.03558 0.04155 0.04334 1.20% Castro::normalize_species() 62 0.04149 0.04223 0.04279 1.18% StateDataPhysBCFunct::() 41 0.03207 0.03507 0.03797 1.05% StateData::FillBoundary(geom) 41 0.03199 0.03498 0.03787 1.05% Castro::construct_new_source() 50 0.02919 0.03197 0.03618 1.00% Castro::construct_new_gravity_source() 10 0.02305 0.02584 0.02964 0.82% Gravity::interpolate_monopole_grav() 21 0.02805 0.02853 0.02918 0.81% Castro::post_init() 1 0.02607 0.0264 0.02657 0.73% VisMF::Write(FabArray) 2 0.01339 0.01395 0.01678 0.46% Castro::post_timestep() 10 0.0156 0.01592 0.01612 0.45% Castro::apply_source_to_state() 20 0.01224 0.01368 0.01468 0.41% FabArray::Saxpy() 20 0.01219 0.01364 0.01462 0.40% FabArray::setDomainBndry() 41 0.008966 0.01124 0.01276 0.35% Castro::check_for_nan() 20 0.01021 0.01124 0.01246 0.34% MultiFab::contains_nan() 20 0.01018 0.01122 0.01244 0.34% Castro::Castro() 1 0.01114 0.01146 0.01228 0.34% Castro::construct_old_source() 50 0.007246 0.01008 0.01069 0.30% Castro::construct_old_gravity_source() 10 0.007196 0.01002 0.01062 0.29% Castro::initMFs() 1 0.006922 0.007389 0.008697 0.24% Castro::computeNewDt() 9 0.008452 0.008457 0.008461 0.23% AmrLevel::AmrLevel(dm) 1 0.005736 0.005954 0.006572 0.18% StateData::define() 4 0.005713 0.00593 0.006539 0.18% Castro::enforce_min_density() 62 0.005724 0.006002 0.006224 0.17% Castro::swap_state_time_levels() 10 0.002163 0.004445 0.004904 0.14% Castro::finalize_advance() 10 0.003012 0.003521 0.004277 0.12% Castro::buildMetrics() 1 0.001719 0.001815 0.00204 0.06% Castro::finalize_do_advance() 10 0.0006566 0.001476 0.001743 0.05% Castro::post_regrid() 1 0.001526 0.001587 0.001684 0.05% Amr::InitAmr() 1 0.000285 0.0003214 0.0004896 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.322e-05 0.0001749 0.0002041 0.01% DistributionMapping::LeastUsedCPUs() 1 8.25e-06 0.0001696 0.0001974 0.01% Castro::enforce_consistent_e() 1 7.678e-05 8.834e-05 0.0001012 0.00% FabArrayBase::getCPC() 41 6.324e-05 8.004e-05 9.479e-05 0.00% Amr::writeSmallPlotFile() 1 2.582e-05 4.365e-05 6.378e-05 0.00% FabArrayBase::CPC::define() 2 2.087e-05 2.456e-05 2.916e-05 0.00% Castro::enforce_speed_limit() 62 2.389e-05 2.633e-05 2.902e-05 0.00% Castro::FluxRegCrseInit 10 6.837e-06 1.008e-05 1.982e-05 0.00% Gravity::swapTimeLevels() 10 1.061e-05 1.163e-05 1.384e-05 0.00% Gravity::set_mass_offset() 10 9.403e-06 1.067e-05 1.146e-05 0.00% Amr::initSubcycle() 1 8.599e-06 9.533e-06 1.043e-05 0.00% Castro::create_source_corrector() 10 8.352e-06 9.053e-06 1.024e-05 0.00% Castro::retry_advance_ctu() 10 4.791e-06 5.468e-06 6.251e-06 0.00% Castro::FluxRegFineAdd() 10 1.858e-06 2.304e-06 2.678e-06 0.00% DistributionMapping::Distribute() 1 9.56e-07 1.107e-06 1.367e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-23-g7aad6ca7f649) finalized