MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-23-g7aad6ca7f649) initialized Starting run at 05:42:36 UTC on 2023-03-24. Successfully read inputs file ... Castro git describe: 23.03-14-g7e0f49884 AMReX git describe: 23.03-23-g7aad6ca7f Microphysics git describe: 23.03-20-g47547e7e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015275301 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.36969936 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.389755472 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325901726 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325658419 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353181715 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328296607 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31452389 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313123709 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313274854 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311793787 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010535622 seconds Ending run at 05:42:39 UTC on 2023-03-24. Run time = 3.580247025 Run time without initialization = 3.363107058 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.579 ... 3.58 ... 3.58 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2847 2.3478 2.4036 67.13% Gravity::make_radial_gravity() 21 0.3199 0.3263 0.3411 9.53% Castro::do_advance_ctu() 10 0.05277 0.1116 0.176 4.92% Castro::initData() 1 0.0426 0.09254 0.1464 4.09% Castro::estTimeStep() 21 0.03481 0.08683 0.1453 4.06% FabArray::ParallelCopy_finish() 41 0.03373 0.0487 0.08538 2.38% amrex::Copy() 193 0.05995 0.07207 0.07912 2.21% FabArray::setVal() 143 0.05858 0.06772 0.07828 2.19% Castro::reset_internal_energy(Fab) 1008 0.04735 0.04986 0.05178 1.45% Castro::normalize_species() 62 0.04119 0.04197 0.04335 1.21% FabArray::ParallelCopy_nowait() 41 0.03704 0.04148 0.04295 1.20% StateData::FillBoundary(geom) 41 0.03216 0.03492 0.03853 1.08% FillPatchIterator::Initialize 41 0.02855 0.03291 0.03528 0.99% Castro::construct_new_gravity_source() 10 0.02327 0.0258 0.02932 0.82% Gravity::interpolate_monopole_grav() 21 0.02774 0.02818 0.02887 0.81% Castro::computeTemp() 63 0.01783 0.01955 0.02102 0.59% Castro::initialize_do_advance() 10 0.01193 0.01675 0.01904 0.53% VisMF::Write(FabArray) 2 0.01336 0.01404 0.01761 0.49% FabArray::Saxpy() 20 0.01242 0.01399 0.01514 0.42% Castro::initialize_advance() 10 0.004111 0.01007 0.0132 0.37% MultiFab::contains_nan() 20 0.01028 0.01126 0.01303 0.36% FabArray::setDomainBndry() 41 0.008742 0.01115 0.01265 0.35% Castro::construct_old_gravity_source() 10 0.007746 0.01036 0.01109 0.31% Castro::initMFs() 1 0.006983 0.008843 0.01019 0.28% Amr::writePlotFile() 2 0.006693 0.009012 0.009672 0.27% StateData::define() 4 0.00576 0.007331 0.008451 0.24% main() 1 0.00536 0.006112 0.006575 0.18% Castro::construct_new_source() 50 0.005726 0.006238 0.006564 0.18% Castro::enforce_min_density() 62 0.005718 0.00604 0.006513 0.18% Castro::swap_state_time_levels() 10 0.002229 0.00444 0.004883 0.14% Gravity::get_new_grav_vector() 11 0.003045 0.003607 0.004472 0.12% Amr::coarseTimeStep() 10 0.001477 0.002463 0.003235 0.09% Gravity::get_old_grav_vector() 10 0.001864 0.002428 0.002777 0.08% Castro::buildMetrics() 1 0.001655 0.002084 0.002389 0.07% Castro::finalize_do_advance() 10 0.0006599 0.001909 0.00234 0.07% Castro::expand_state() 10 0.0006332 0.0008316 0.0009598 0.03% Amr::InitAmr() 1 0.0002959 0.0004194 0.0006551 0.02% DistributionMapping::LeastUsedCPUs() 1 8.703e-06 0.0002645 0.0004011 0.01% Amr::timeStep() 10 0.0001862 0.0002369 0.0003899 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002862 0.0003035 0.0003357 0.01% Castro::enforce_consistent_e() 1 8.118e-05 0.000108 0.0002541 0.01% Castro::clean_state() 62 0.0001352 0.0001615 0.0001868 0.01% Castro::finalize_advance() 10 7.86e-05 0.0001054 0.0001273 0.00% Castro::Castro() 1 5.651e-05 7.205e-05 0.0001064 0.00% StateDataPhysBCFunct::() 41 8.086e-05 8.876e-05 9.294e-05 0.00% Amr::FinalizeInit() 1 3.665e-06 1.57e-05 8.628e-05 0.00% FabArray::ParallelCopy() 41 6.412e-05 7.503e-05 8.137e-05 0.00% Castro::do_new_sources() 10 5.82e-05 6.494e-05 7.234e-05 0.00% Castro::construct_old_source() 50 4.964e-05 6.198e-05 7.193e-05 0.00% FillPatchSingleLevel 41 5.461e-05 6.39e-05 7.031e-05 0.00% Castro::do_old_sources() 10 5.372e-05 6.272e-05 6.998e-05 0.00% FabArrayBase::getCPC() 41 4.284e-05 5.65e-05 6.955e-05 0.00% Amr::writeSmallPlotFile() 1 2.638e-05 4.317e-05 5.537e-05 0.00% Castro::subcycle_advance_ctu() 10 3.788e-05 4.435e-05 5.412e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.569e-05 3.821e-05 5.221e-05 0.00% Castro::apply_source_to_state() 20 3.621e-05 4.521e-05 5.08e-05 0.00% Castro::advance() 10 3.769e-05 4.306e-05 4.671e-05 0.00% Castro::construct_old_gravity() 10 3.307e-05 3.941e-05 4.619e-05 0.00% Castro::construct_new_gravity() 10 3.152e-05 4.113e-05 4.495e-05 0.00% Castro::enforce_speed_limit() 62 2.499e-05 2.93e-05 3.605e-05 0.00% FabArrayBase::CPC::define() 2 2.055e-05 2.432e-05 3.062e-05 0.00% Castro::check_for_nan() 20 2.094e-05 2.295e-05 2.668e-05 0.00% Amr::defBaseLevel() 1 1.773e-05 2.193e-05 2.532e-05 0.00% Gravity::swapTimeLevels() 10 9.961e-06 1.338e-05 2.281e-05 0.00% Amr::initSubcycle() 1 9.252e-06 1.278e-05 1.63e-05 0.00% Castro::post_timestep() 10 1.182e-05 1.42e-05 1.621e-05 0.00% Gravity::set_mass_offset() 10 9.121e-06 1.113e-05 1.332e-05 0.00% Castro::create_source_corrector() 10 7.929e-06 9.477e-06 1.152e-05 0.00% Castro::FluxRegCrseInit 10 8.01e-06 8.894e-06 1.022e-05 0.00% Castro::computeNewDt() 9 7.264e-06 7.875e-06 8.478e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.798e-06 4.709e-06 6.539e-06 0.00% Castro::retry_advance_ctu() 10 4.516e-06 5.461e-06 6.477e-06 0.00% Amr::InitializeInit() 1 2.191e-06 3.062e-06 6.23e-06 0.00% Castro::computeInitialDt() 2 3.135e-06 3.89e-06 4.811e-06 0.00% Castro::post_init() 1 2.461e-06 3.231e-06 4.017e-06 0.00% Castro::post_regrid() 1 1.725e-06 2.501e-06 3.343e-06 0.00% Amr::init() 1 1.858e-06 2.24e-06 2.84e-06 0.00% Castro::FluxRegFineAdd() 10 2.032e-06 2.457e-06 2.794e-06 0.00% Amr::initialInit() 1 1.248e-06 1.57e-06 2.459e-06 0.00% DistributionMapping::Distribute() 1 9.96e-07 1.172e-06 1.374e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.579 3.58 3.58 100.00% Amr::coarseTimeStep() 10 3.346 3.346 3.346 93.46% Amr::timeStep() 10 3.333 3.334 3.335 93.15% Castro::advance() 10 3.317 3.318 3.319 92.69% Castro::subcycle_advance_ctu() 10 3.238 3.244 3.258 90.99% Castro::do_advance_ctu() 10 3.237 3.244 3.258 90.99% Castro::construct_ctu_hydro_source() 10 2.285 2.348 2.404 67.13% Gravity::make_radial_gravity() 21 0.3361 0.3431 0.3543 9.89% Gravity::get_new_grav_vector() 11 0.2226 0.2258 0.2281 6.37% Amr::init() 1 0.2163 0.2165 0.2167 6.05% Castro::construct_old_gravity() 10 0.1939 0.1987 0.2084 5.82% Gravity::get_old_grav_vector() 10 0.1931 0.198 0.2078 5.80% Castro::construct_new_gravity() 10 0.1992 0.2016 0.2033 5.68% Amr::initialInit() 1 0.2009 0.2015 0.2018 5.64% FillPatchIterator::Initialize 41 0.1543 0.1695 0.1925 5.38% Amr::InitializeInit() 1 0.06459 0.117 0.1735 4.85% Amr::defBaseLevel() 1 0.06459 0.117 0.1735 4.85% Castro::initialize_do_advance() 10 0.1542 0.1645 0.1698 4.74% FillPatchSingleLevel 41 0.1121 0.1254 0.1552 4.33% Castro::initData() 1 0.04612 0.09651 0.1502 4.19% Castro::estTimeStep() 21 0.03481 0.08683 0.1453 4.06% Amr::FinalizeInit() 1 0.02787 0.08447 0.1369 3.83% Castro::expand_state() 10 0.1055 0.1178 0.1286 3.59% FabArray::ParallelCopy() 41 0.07604 0.09033 0.1226 3.42% Castro::clean_state() 62 0.1126 0.1169 0.1207 3.37% Castro::computeInitialDt() 2 0.001994 0.05863 0.1112 3.10% FabArray::ParallelCopy_finish() 41 0.03373 0.0487 0.08538 2.38% amrex::Copy() 193 0.05995 0.07207 0.07912 2.21% FabArray::setVal() 143 0.05858 0.06772 0.07828 2.19% Castro::initialize_advance() 10 0.05534 0.07022 0.07718 2.16% Castro::do_new_sources() 10 0.06018 0.06633 0.0751 2.10% Castro::computeTemp() 63 0.06548 0.06972 0.0731 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04765 0.05017 0.05208 1.45% Castro::reset_internal_energy(Fab) 1008 0.04735 0.04986 0.05178 1.45% Castro::do_old_sources() 10 0.0404 0.04518 0.04655 1.30% Castro::normalize_species() 62 0.04119 0.04197 0.04335 1.21% FabArray::ParallelCopy_nowait() 41 0.03712 0.04156 0.04301 1.20% StateDataPhysBCFunct::() 41 0.03225 0.03501 0.03862 1.08% StateData::FillBoundary(geom) 41 0.03216 0.03492 0.03853 1.08% Castro::construct_new_source() 50 0.02932 0.03204 0.03588 1.00% Castro::construct_new_gravity_source() 10 0.02327 0.0258 0.02932 0.82% Gravity::interpolate_monopole_grav() 21 0.02774 0.02818 0.02887 0.81% Amr::writePlotFile() 2 0.02549 0.0257 0.02603 0.73% Castro::post_init() 1 0.0251 0.02529 0.02543 0.71% VisMF::Write(FabArray) 2 0.01336 0.01404 0.01761 0.49% Castro::post_timestep() 10 0.01527 0.01591 0.01655 0.46% Castro::apply_source_to_state() 20 0.01246 0.01404 0.01518 0.42% FabArray::Saxpy() 20 0.01242 0.01399 0.01514 0.42% Castro::Castro() 1 0.009937 0.01282 0.015 0.42% Castro::check_for_nan() 20 0.0103 0.01128 0.01306 0.36% MultiFab::contains_nan() 20 0.01028 0.01126 0.01303 0.36% FabArray::setDomainBndry() 41 0.008742 0.01115 0.01265 0.35% Castro::construct_old_source() 50 0.007795 0.01043 0.01116 0.31% Castro::construct_old_gravity_source() 10 0.007746 0.01036 0.01109 0.31% Castro::initMFs() 1 0.006983 0.008843 0.01019 0.28% Castro::computeNewDt() 9 0.008618 0.008625 0.008632 0.24% AmrLevel::AmrLevel(dm) 1 0.005795 0.00737 0.008503 0.24% StateData::define() 4 0.00576 0.007331 0.008451 0.24% Castro::enforce_min_density() 62 0.005718 0.00604 0.006513 0.18% Castro::swap_state_time_levels() 10 0.002229 0.00444 0.004883 0.14% Castro::finalize_advance() 10 0.003055 0.003456 0.003898 0.11% Castro::buildMetrics() 1 0.001765 0.002256 0.002607 0.07% Castro::finalize_do_advance() 10 0.0006599 0.001909 0.00234 0.07% Castro::post_regrid() 1 0.001364 0.001576 0.001713 0.05% Amr::InitAmr() 1 0.0003052 0.0004321 0.0006714 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.389e-05 0.0002704 0.0004088 0.01% DistributionMapping::LeastUsedCPUs() 1 8.703e-06 0.0002645 0.0004011 0.01% Castro::enforce_consistent_e() 1 8.118e-05 0.000108 0.0002541 0.01% FabArrayBase::getCPC() 41 6.679e-05 8.082e-05 9.293e-05 0.00% Amr::writeSmallPlotFile() 1 2.638e-05 4.317e-05 5.537e-05 0.00% Castro::enforce_speed_limit() 62 2.499e-05 2.93e-05 3.605e-05 0.00% FabArrayBase::CPC::define() 2 2.055e-05 2.432e-05 3.062e-05 0.00% Gravity::swapTimeLevels() 10 9.961e-06 1.338e-05 2.281e-05 0.00% Amr::initSubcycle() 1 9.252e-06 1.278e-05 1.63e-05 0.00% Gravity::set_mass_offset() 10 9.121e-06 1.113e-05 1.332e-05 0.00% Castro::create_source_corrector() 10 7.929e-06 9.477e-06 1.152e-05 0.00% Castro::FluxRegCrseInit 10 8.01e-06 8.894e-06 1.022e-05 0.00% Castro::retry_advance_ctu() 10 4.516e-06 5.461e-06 6.477e-06 0.00% Castro::FluxRegFineAdd() 10 2.032e-06 2.457e-06 2.794e-06 0.00% DistributionMapping::Distribute() 1 9.96e-07 1.172e-06 1.374e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-23-g7aad6ca7f649) finalized