MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-23-g7aad6ca7f649) initialized Starting run at 05:41:57 UTC on 2023-03-27. Successfully read inputs file ... Castro git describe: 23.03-15-g8309823c4 AMReX git describe: 23.03-23-g7aad6ca7f Microphysics git describe: 23.03-21-gfc700fa2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018159237 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362686467 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349153646 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.325623501 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.325219169 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357750278 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328813501 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310499982 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310591192 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.309380454 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310252794 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010415631 seconds Ending run at 05:42:01 UTC on 2023-03-27. Run time = 3.556609362 Run time without initialization = 3.307805781 Average number of zones advanced per microsecond: 0.793 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.555 ... 3.556 ... 3.557 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2583 2.3354 2.3706 66.65% Gravity::make_radial_gravity() 21 0.3262 0.3376 0.357 10.04% Castro::estTimeStep() 21 0.02204 0.0936 0.1609 4.52% Castro::initData() 1 0.04072 0.09838 0.1578 4.44% Castro::do_advance_ctu() 10 0.03395 0.07383 0.1532 4.31% FabArray::ParallelCopy_finish() 41 0.03645 0.04862 0.08 2.25% amrex::Copy() 193 0.0585 0.06995 0.07775 2.19% FabArray::setVal() 143 0.05843 0.06717 0.07753 2.18% Castro::reset_internal_energy(Fab) 1008 0.04817 0.05053 0.05314 1.49% Castro::normalize_species() 62 0.04161 0.04221 0.04349 1.22% FabArray::ParallelCopy_nowait() 41 0.03771 0.04135 0.04271 1.20% StateData::FillBoundary(geom) 41 0.03182 0.03517 0.03898 1.10% FillPatchIterator::Initialize 41 0.02887 0.03339 0.03619 1.02% Castro::construct_new_gravity_source() 10 0.02322 0.0258 0.0293 0.82% Gravity::interpolate_monopole_grav() 21 0.02784 0.02831 0.02894 0.81% Castro::computeTemp() 63 0.01868 0.01995 0.02062 0.58% Castro::initialize_do_advance() 10 0.01267 0.01707 0.01936 0.54% VisMF::Write(FabArray) 2 0.0137 0.01468 0.01868 0.53% FabArray::Saxpy() 20 0.01252 0.01406 0.01478 0.42% Castro::initialize_advance() 10 0.004162 0.01005 0.0133 0.37% Amr::writePlotFile() 2 0.008178 0.01176 0.01327 0.37% FabArray::setDomainBndry() 41 0.008714 0.01117 0.01257 0.35% MultiFab::contains_nan() 20 0.01012 0.011 0.0117 0.33% Castro::construct_old_gravity_source() 10 0.007727 0.0103 0.01093 0.31% Castro::initMFs() 1 0.006942 0.008834 0.01024 0.29% StateData::define() 4 0.005802 0.007371 0.008559 0.24% main() 1 0.005128 0.006021 0.006669 0.19% Castro::enforce_min_density() 62 0.005845 0.006119 0.006537 0.18% Castro::construct_new_source() 50 0.005743 0.006251 0.006536 0.18% Gravity::get_new_grav_vector() 11 0.003147 0.003932 0.005797 0.16% Castro::swap_state_time_levels() 10 0.002687 0.004612 0.005318 0.15% Amr::coarseTimeStep() 10 0.001346 0.002169 0.002819 0.08% Gravity::get_old_grav_vector() 10 0.001793 0.002312 0.002767 0.08% Castro::buildMetrics() 1 0.001656 0.002094 0.002431 0.07% Castro::finalize_do_advance() 10 0.0006441 0.001494 0.001817 0.05% Castro::expand_state() 10 0.0006967 0.0007774 0.0008656 0.02% Amr::InitAmr() 1 0.0002992 0.000428 0.0006668 0.02% Amr::timeStep() 10 0.0001726 0.0002248 0.0004186 0.01% DistributionMapping::LeastUsedCPUs() 1 7.964e-06 0.0002683 0.0004157 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002813 0.0002991 0.0003367 0.01% Castro::clean_state() 62 0.0001393 0.0001619 0.0001789 0.01% Castro::enforce_consistent_e() 1 7.464e-05 0.0001072 0.0001511 0.00% Castro::finalize_advance() 10 8.61e-05 0.0001039 0.00013 0.00% StateDataPhysBCFunct::() 41 7.876e-05 9.14e-05 0.0001212 0.00% Amr::FinalizeInit() 1 3.503e-06 1.68e-05 8.878e-05 0.00% FabArray::ParallelCopy() 41 6.728e-05 7.17e-05 8.153e-05 0.00% Castro::Castro() 1 5.748e-05 6.856e-05 8.042e-05 0.00% Castro::do_old_sources() 10 5.268e-05 6.438e-05 7.878e-05 0.00% Castro::construct_old_source() 50 6.287e-05 6.882e-05 7.798e-05 0.00% FillPatchSingleLevel 41 5.76e-05 6.455e-05 7.495e-05 0.00% Castro::do_new_sources() 10 5.84e-05 6.447e-05 7.31e-05 0.00% FabArrayBase::getCPC() 41 4.532e-05 5.508e-05 6.557e-05 0.00% Castro::subcycle_advance_ctu() 10 3.936e-05 4.809e-05 5.695e-05 0.00% Amr::writeSmallPlotFile() 1 2.601e-05 4.166e-05 5.499e-05 0.00% Castro::apply_source_to_state() 20 3.483e-05 4.622e-05 5.27e-05 0.00% Castro::construct_new_gravity() 10 3.483e-05 3.816e-05 4.762e-05 0.00% Castro::advance() 10 3.863e-05 4.207e-05 4.704e-05 0.00% Castro::construct_old_gravity() 10 3.61e-05 3.884e-05 4.688e-05 0.00% Amr::defBaseLevel() 1 1.954e-05 2.522e-05 3.603e-05 0.00% FabArrayBase::CPC::define() 2 1.883e-05 2.536e-05 3.039e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.421e-05 2.305e-05 3.018e-05 0.00% Castro::enforce_speed_limit() 62 2.42e-05 2.642e-05 2.809e-05 0.00% Castro::check_for_nan() 20 2.035e-05 2.253e-05 2.619e-05 0.00% Castro::post_timestep() 10 1.331e-05 1.596e-05 1.921e-05 0.00% Amr::initSubcycle() 1 9.494e-06 1.306e-05 1.649e-05 0.00% Gravity::swapTimeLevels() 10 1.052e-05 1.189e-05 1.369e-05 0.00% Gravity::set_mass_offset() 10 9.556e-06 1.051e-05 1.192e-05 0.00% Castro::create_source_corrector() 10 8.261e-06 9.441e-06 1.093e-05 0.00% Castro::computeNewDt() 9 7.2e-06 8.443e-06 9.94e-06 0.00% Castro::FluxRegCrseInit 10 8.06e-06 9.141e-06 9.935e-06 0.00% Amr::initialInit() 1 1.6e-06 2.883e-06 9.458e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.825e-06 4.939e-06 9.062e-06 0.00% Castro::post_regrid() 1 1.739e-06 3.464e-06 6.785e-06 0.00% Amr::InitializeInit() 1 2.123e-06 3.064e-06 6.45e-06 0.00% Castro::retry_advance_ctu() 10 4.443e-06 5.194e-06 6.052e-06 0.00% Castro::computeInitialDt() 2 3.863e-06 4.523e-06 5.674e-06 0.00% Castro::post_init() 1 2.652e-06 3.915e-06 5.619e-06 0.00% Amr::init() 1 1.927e-06 2.188e-06 2.595e-06 0.00% Castro::FluxRegFineAdd() 10 1.984e-06 2.233e-06 2.569e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.217e-06 1.472e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.555 3.556 3.557 100.00% Amr::coarseTimeStep() 10 3.291 3.291 3.291 92.53% Amr::timeStep() 10 3.278 3.279 3.28 92.21% Castro::advance() 10 3.262 3.263 3.263 91.75% Castro::subcycle_advance_ctu() 10 3.183 3.189 3.202 90.02% Castro::do_advance_ctu() 10 3.183 3.189 3.202 90.02% Castro::construct_ctu_hydro_source() 10 2.258 2.335 2.371 66.65% Gravity::make_radial_gravity() 21 0.3415 0.3535 0.3703 10.41% Amr::init() 1 0.2479 0.2482 0.2484 6.98% Gravity::get_new_grav_vector() 11 0.2314 0.2337 0.2353 6.62% Amr::initialInit() 1 0.2292 0.2299 0.2307 6.49% Castro::construct_old_gravity() 10 0.196 0.2026 0.2171 6.10% Gravity::get_old_grav_vector() 10 0.1952 0.2019 0.2165 6.09% Castro::construct_new_gravity() 10 0.1938 0.1953 0.1962 5.52% FillPatchIterator::Initialize 41 0.156 0.17 0.1876 5.27% Amr::InitializeInit() 1 0.06264 0.1233 0.1867 5.25% Amr::defBaseLevel() 1 0.06264 0.1232 0.1867 5.25% Castro::initialize_do_advance() 10 0.1559 0.164 0.1712 4.81% Amr::FinalizeInit() 1 0.04381 0.1067 0.1673 4.70% Castro::initData() 1 0.04426 0.1027 0.163 4.58% Castro::estTimeStep() 21 0.02204 0.0936 0.1609 4.52% FillPatchSingleLevel 41 0.1152 0.1254 0.15 4.22% Castro::computeInitialDt() 2 0.002727 0.06634 0.1271 3.57% Castro::expand_state() 10 0.1064 0.1167 0.1228 3.45% Castro::clean_state() 62 0.1141 0.1181 0.1225 3.44% FabArray::ParallelCopy() 41 0.07929 0.09012 0.1179 3.31% FabArray::ParallelCopy_finish() 41 0.03645 0.04862 0.08 2.25% amrex::Copy() 193 0.0585 0.06995 0.07775 2.19% FabArray::setVal() 143 0.05843 0.06717 0.07753 2.18% Castro::initialize_advance() 10 0.05649 0.07022 0.07642 2.15% Castro::do_new_sources() 10 0.06032 0.06631 0.07477 2.10% Castro::computeTemp() 63 0.06715 0.07078 0.07378 2.07% Castro::reset_internal_energy(MultiFab) 63 0.04847 0.05083 0.05344 1.50% Castro::reset_internal_energy(Fab) 1008 0.04817 0.05053 0.05314 1.49% Castro::do_old_sources() 10 0.04018 0.04527 0.0467 1.31% Castro::normalize_species() 62 0.04161 0.04221 0.04349 1.22% FabArray::ParallelCopy_nowait() 41 0.03779 0.04143 0.04278 1.20% Castro::post_init() 1 0.0388 0.03949 0.03999 1.12% StateDataPhysBCFunct::() 41 0.0319 0.03526 0.03906 1.10% StateData::FillBoundary(geom) 41 0.03182 0.03517 0.03898 1.10% Castro::construct_new_source() 50 0.02938 0.03205 0.03579 1.01% Amr::writePlotFile() 2 0.02788 0.0288 0.02965 0.83% Castro::construct_new_gravity_source() 10 0.02322 0.0258 0.0293 0.82% Gravity::interpolate_monopole_grav() 21 0.02784 0.02831 0.02894 0.81% VisMF::Write(FabArray) 2 0.0137 0.01468 0.01868 0.53% Castro::post_timestep() 10 0.01551 0.01597 0.01631 0.46% Castro::Castro() 1 0.01004 0.01281 0.01502 0.42% Castro::apply_source_to_state() 20 0.01256 0.01411 0.01483 0.42% FabArray::Saxpy() 20 0.01252 0.01406 0.01478 0.42% FabArray::setDomainBndry() 41 0.008714 0.01117 0.01257 0.35% Castro::check_for_nan() 20 0.01014 0.01103 0.01173 0.33% MultiFab::contains_nan() 20 0.01012 0.011 0.0117 0.33% Castro::construct_old_source() 50 0.007793 0.01036 0.01099 0.31% Castro::construct_old_gravity_source() 10 0.007727 0.0103 0.01093 0.31% Castro::initMFs() 1 0.006942 0.008834 0.01024 0.29% AmrLevel::AmrLevel(dm) 1 0.005823 0.007394 0.008588 0.24% StateData::define() 4 0.005802 0.007371 0.008559 0.24% Castro::computeNewDt() 9 0.008516 0.008525 0.008534 0.24% Castro::enforce_min_density() 62 0.005845 0.006119 0.006537 0.18% Castro::swap_state_time_levels() 10 0.002687 0.004612 0.005318 0.15% Castro::finalize_advance() 10 0.003009 0.003448 0.003923 0.11% Castro::post_regrid() 1 0.001576 0.002013 0.002866 0.08% Castro::buildMetrics() 1 0.001774 0.002268 0.002648 0.07% Castro::finalize_do_advance() 10 0.0006441 0.001494 0.001817 0.05% Amr::InitAmr() 1 0.0003089 0.0004411 0.000683 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.301e-05 0.0002745 0.0004237 0.01% DistributionMapping::LeastUsedCPUs() 1 7.964e-06 0.0002683 0.0004157 0.01% Castro::enforce_consistent_e() 1 7.464e-05 0.0001072 0.0001511 0.00% FabArrayBase::getCPC() 41 6.755e-05 8.044e-05 9.596e-05 0.00% Amr::writeSmallPlotFile() 1 2.601e-05 4.166e-05 5.499e-05 0.00% FabArrayBase::CPC::define() 2 1.883e-05 2.536e-05 3.039e-05 0.00% Castro::enforce_speed_limit() 62 2.42e-05 2.642e-05 2.809e-05 0.00% Amr::initSubcycle() 1 9.494e-06 1.306e-05 1.649e-05 0.00% Gravity::swapTimeLevels() 10 1.052e-05 1.189e-05 1.369e-05 0.00% Gravity::set_mass_offset() 10 9.556e-06 1.051e-05 1.192e-05 0.00% Castro::create_source_corrector() 10 8.261e-06 9.441e-06 1.093e-05 0.00% Castro::FluxRegCrseInit 10 8.06e-06 9.141e-06 9.935e-06 0.00% Castro::retry_advance_ctu() 10 4.443e-06 5.194e-06 6.052e-06 0.00% Castro::FluxRegFineAdd() 10 1.984e-06 2.233e-06 2.569e-06 0.00% DistributionMapping::Distribute() 1 9.87e-07 1.217e-06 1.472e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-23-g7aad6ca7f649) finalized