MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-24-g4fab19a02359) initialized Starting run at 19:39:45 UTC on 2023-03-28. Successfully read inputs file ... Castro git describe: 23.03-16-gff559716a AMReX git describe: 23.03-24-g4fab19a02 Microphysics git describe: 23.03-23-g27bca043 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015650763 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360165292 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.3687276 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335056358 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335113145 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357985156 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337703536 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313080841 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313158487 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313830706 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313592708 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010270942 seconds Ending run at 19:39:49 UTC on 2023-03-28. Run time = 3.546952851 Run time without initialization = 3.36654739 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.545 ... 3.547 ... 3.547 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2642 2.3547 2.4038 67.77% Gravity::make_radial_gravity() 21 0.3162 0.3276 0.3342 9.42% Castro::do_advance_ctu() 10 0.02572 0.07866 0.1717 4.84% Castro::initData() 1 0.03856 0.07634 0.1138 3.21% Castro::estTimeStep() 21 0.02359 0.06714 0.1108 3.12% FabArray::setVal() 143 0.06438 0.07546 0.08784 2.48% amrex::Copy() 193 0.0718 0.07595 0.08326 2.35% FabArray::ParallelCopy_finish() 41 0.03593 0.04756 0.0566 1.60% Castro::reset_internal_energy(Fab) 1008 0.04935 0.05101 0.05265 1.48% FabArray::ParallelCopy_nowait() 41 0.04133 0.04376 0.04527 1.28% Castro::normalize_species() 62 0.04179 0.04249 0.04287 1.21% StateData::FillBoundary(geom) 41 0.03301 0.03604 0.03995 1.13% FillPatchIterator::Initialize 41 0.02992 0.03578 0.03814 1.08% Castro::construct_new_gravity_source() 10 0.02375 0.02753 0.0311 0.88% Gravity::interpolate_monopole_grav() 21 0.02783 0.02832 0.02867 0.81% Castro::initialize_do_advance() 10 0.01539 0.01877 0.02119 0.60% Castro::computeTemp() 63 0.01937 0.02007 0.02119 0.60% VisMF::Write(FabArray) 2 0.01307 0.01365 0.0163 0.46% FabArray::Saxpy() 20 0.01409 0.01483 0.01564 0.44% Castro::initialize_advance() 10 0.009665 0.01189 0.01438 0.41% FabArray::setDomainBndry() 41 0.009697 0.01227 0.0137 0.39% MultiFab::contains_nan() 20 0.01084 0.01161 0.0125 0.35% Castro::construct_old_gravity_source() 10 0.01015 0.01091 0.0113 0.32% Amr::writePlotFile() 2 0.006839 0.009669 0.01018 0.29% Castro::initMFs() 1 0.006876 0.007286 0.008435 0.24% StateData::define() 4 0.005683 0.006472 0.00834 0.24% main() 1 0.005378 0.006771 0.00722 0.20% Castro::construct_new_source() 50 0.006215 0.006399 0.006644 0.19% Castro::enforce_min_density() 62 0.006002 0.006306 0.006532 0.18% Gravity::get_new_grav_vector() 11 0.003346 0.004221 0.005912 0.17% Castro::swap_state_time_levels() 10 0.003541 0.00474 0.004927 0.14% Amr::coarseTimeStep() 10 0.001215 0.002377 0.003508 0.10% Castro::buildMetrics() 1 0.001605 0.00189 0.003008 0.08% Gravity::get_old_grav_vector() 10 0.002003 0.00251 0.002834 0.08% Castro::finalize_do_advance() 10 0.001716 0.002052 0.002391 0.07% Castro::expand_state() 10 0.0008371 0.0009679 0.001215 0.03% Amr::InitAmr() 1 0.0002778 0.0003561 0.0005028 0.01% Amr::timeStep() 10 0.0001607 0.0002316 0.0004509 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002875 0.0003027 0.0003268 0.01% DistributionMapping::LeastUsedCPUs() 1 6.323e-06 0.0001816 0.0002718 0.01% Castro::clean_state() 62 0.0001606 0.0001996 0.0002381 0.01% Castro::finalize_advance() 10 9.792e-05 0.0001077 0.0001258 0.00% StateDataPhysBCFunct::() 41 8.636e-05 9.907e-05 0.0001138 0.00% Castro::enforce_consistent_e() 1 7.887e-05 8.574e-05 9.598e-05 0.00% FabArray::ParallelCopy() 41 6.72e-05 7.579e-05 8.826e-05 0.00% Castro::Castro() 1 4.471e-05 6.354e-05 8.304e-05 0.00% Castro::construct_old_source() 50 6.247e-05 7.374e-05 8.224e-05 0.00% FillPatchSingleLevel 41 6.396e-05 7.027e-05 8.123e-05 0.00% Castro::do_old_sources() 10 6.015e-05 7.085e-05 7.793e-05 0.00% Castro::do_new_sources() 10 5.842e-05 6.756e-05 7.581e-05 0.00% FabArrayBase::getCPC() 41 4.356e-05 6.403e-05 7.416e-05 0.00% Castro::subcycle_advance_ctu() 10 4.058e-05 5.095e-05 7.119e-05 0.00% Amr::FinalizeInit() 1 4.687e-06 1.343e-05 7.074e-05 0.00% Amr::writeSmallPlotFile() 1 2.519e-05 5.789e-05 6.718e-05 0.00% Castro::apply_source_to_state() 20 4.239e-05 4.79e-05 5.669e-05 0.00% Castro::construct_new_gravity() 10 3.499e-05 4.295e-05 5.617e-05 0.00% Castro::construct_old_gravity() 10 3.855e-05 4.457e-05 5.231e-05 0.00% Castro::advance() 10 3.882e-05 4.434e-05 4.898e-05 0.00% Castro::enforce_speed_limit() 62 2.447e-05 2.832e-05 3.715e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.493e-05 3.006e-05 3.665e-05 0.00% Amr::defBaseLevel() 1 1.743e-05 2.529e-05 3.233e-05 0.00% FabArrayBase::CPC::define() 2 2.08e-05 2.388e-05 3.036e-05 0.00% Castro::check_for_nan() 20 2.058e-05 2.276e-05 2.648e-05 0.00% Castro::computeInitialDt() 2 3.631e-06 8.23e-06 1.978e-05 0.00% Castro::post_timestep() 10 1.298e-05 1.544e-05 1.78e-05 0.00% Amr::initSubcycle() 1 8.647e-06 1.104e-05 1.615e-05 0.00% Gravity::swapTimeLevels() 10 9.174e-06 1.202e-05 1.439e-05 0.00% Gravity::set_mass_offset() 10 9.36e-06 1.058e-05 1.169e-05 0.00% Castro::create_source_corrector() 10 8.503e-06 9.828e-06 1.163e-05 0.00% Castro::FluxRegCrseInit 10 7.533e-06 9.46e-06 1.086e-05 0.00% Castro::computeNewDt() 9 7.781e-06 8.768e-06 9.436e-06 0.00% Castro::retry_advance_ctu() 10 4.392e-06 6.08e-06 7.121e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.549e-06 4.824e-06 6.914e-06 0.00% Amr::InitializeInit() 1 1.942e-06 2.826e-06 5.23e-06 0.00% Castro::post_init() 1 2.991e-06 3.461e-06 3.912e-06 0.00% Castro::post_regrid() 1 1.924e-06 2.849e-06 3.615e-06 0.00% Castro::FluxRegFineAdd() 10 1.847e-06 2.452e-06 3.006e-06 0.00% Amr::init() 1 1.905e-06 2.253e-06 2.957e-06 0.00% Amr::initialInit() 1 1.411e-06 1.697e-06 2.149e-06 0.00% DistributionMapping::Distribute() 1 8.59e-07 1.137e-06 1.566e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.545 3.547 3.547 100.00% Amr::coarseTimeStep() 10 3.349 3.349 3.349 94.42% Amr::timeStep() 10 3.336 3.337 3.338 94.11% Castro::advance() 10 3.32 3.321 3.322 93.66% Castro::subcycle_advance_ctu() 10 3.231 3.239 3.247 91.55% Castro::do_advance_ctu() 10 3.231 3.239 3.247 91.55% Castro::construct_ctu_hydro_source() 10 2.264 2.355 2.404 67.77% Gravity::make_radial_gravity() 21 0.3321 0.3446 0.3527 9.94% Gravity::get_new_grav_vector() 11 0.2253 0.2285 0.2309 6.51% Castro::construct_old_gravity() 10 0.1927 0.201 0.2065 5.82% Gravity::get_old_grav_vector() 10 0.1919 0.2003 0.2058 5.80% Castro::construct_new_gravity() 10 0.201 0.2035 0.2052 5.79% FillPatchIterator::Initialize 41 0.1597 0.1757 0.1928 5.43% Castro::initialize_do_advance() 10 0.1577 0.1716 0.1848 5.21% Amr::init() 1 0.1797 0.1799 0.18 5.07% Amr::initialInit() 1 0.1638 0.1639 0.1641 4.63% FillPatchSingleLevel 41 0.1196 0.1277 0.1415 3.99% Castro::expand_state() 10 0.1079 0.122 0.1357 3.83% Amr::InitializeInit() 1 0.06142 0.09809 0.1351 3.81% Amr::defBaseLevel() 1 0.06142 0.09809 0.1351 3.81% Castro::clean_state() 62 0.1175 0.1195 0.121 3.41% Castro::initData() 1 0.04213 0.08017 0.118 3.33% Castro::estTimeStep() 21 0.02359 0.06714 0.1108 3.12% Amr::FinalizeInit() 1 0.02868 0.06582 0.1024 2.89% FabArray::ParallelCopy() 41 0.08122 0.09148 0.1014 2.86% FabArray::setVal() 143 0.06438 0.07546 0.08784 2.48% Castro::initialize_advance() 10 0.06938 0.07824 0.08624 2.43% amrex::Copy() 193 0.0718 0.07595 0.08326 2.35% Castro::do_new_sources() 10 0.06207 0.06986 0.07809 2.20% Castro::computeInitialDt() 2 0.002039 0.0392 0.0757 2.13% Castro::computeTemp() 63 0.06909 0.07139 0.07323 2.06% FabArray::ParallelCopy_finish() 41 0.03593 0.04756 0.0566 1.60% Castro::reset_internal_energy(MultiFab) 63 0.04966 0.05132 0.05296 1.49% Castro::reset_internal_energy(Fab) 1008 0.04935 0.05101 0.05265 1.48% Castro::do_old_sources() 10 0.04617 0.04704 0.04753 1.34% FabArray::ParallelCopy_nowait() 41 0.04143 0.04384 0.04536 1.28% Castro::normalize_species() 62 0.04179 0.04249 0.04287 1.21% StateDataPhysBCFunct::() 41 0.03312 0.03614 0.04005 1.13% StateData::FillBoundary(geom) 41 0.03301 0.03604 0.03995 1.13% Castro::construct_new_source() 50 0.03002 0.03393 0.03771 1.06% Castro::construct_new_gravity_source() 10 0.02375 0.02753 0.0311 0.88% Gravity::interpolate_monopole_grav() 21 0.02783 0.02832 0.02867 0.81% Amr::writePlotFile() 2 0.02613 0.02632 0.02653 0.75% Castro::post_init() 1 0.02589 0.02609 0.02623 0.74% VisMF::Write(FabArray) 2 0.01307 0.01365 0.0163 0.46% Castro::post_timestep() 10 0.01561 0.01594 0.01627 0.46% Castro::apply_source_to_state() 20 0.01413 0.01488 0.0157 0.44% FabArray::Saxpy() 20 0.01409 0.01483 0.01564 0.44% FabArray::setDomainBndry() 41 0.009697 0.01227 0.0137 0.39% Castro::Castro() 1 0.01086 0.0112 0.01274 0.36% Castro::check_for_nan() 20 0.01087 0.01163 0.01252 0.35% MultiFab::contains_nan() 20 0.01084 0.01161 0.0125 0.35% Castro::construct_old_source() 50 0.01021 0.01098 0.01138 0.32% Castro::construct_old_gravity_source() 10 0.01015 0.01091 0.0113 0.32% Castro::computeNewDt() 9 0.008614 0.008625 0.008636 0.24% Castro::initMFs() 1 0.006876 0.007286 0.008435 0.24% AmrLevel::AmrLevel(dm) 1 0.005714 0.006502 0.008371 0.24% StateData::define() 4 0.005683 0.006472 0.00834 0.24% Castro::enforce_min_density() 62 0.006002 0.006306 0.006532 0.18% Castro::swap_state_time_levels() 10 0.003541 0.00474 0.004927 0.14% Castro::finalize_advance() 10 0.00297 0.003752 0.004678 0.13% Castro::buildMetrics() 1 0.001734 0.002038 0.003257 0.09% Castro::finalize_do_advance() 10 0.001716 0.002052 0.002391 0.07% Castro::post_regrid() 1 0.001527 0.001595 0.001675 0.05% Amr::InitAmr() 1 0.000287 0.0003671 0.0005187 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.139e-05 0.0001876 0.0002786 0.01% DistributionMapping::LeastUsedCPUs() 1 6.323e-06 0.0001816 0.0002718 0.01% FabArrayBase::getCPC() 41 6.704e-05 8.791e-05 9.798e-05 0.00% Castro::enforce_consistent_e() 1 7.887e-05 8.574e-05 9.598e-05 0.00% Amr::writeSmallPlotFile() 1 2.519e-05 5.789e-05 6.718e-05 0.00% Castro::enforce_speed_limit() 62 2.447e-05 2.832e-05 3.715e-05 0.00% FabArrayBase::CPC::define() 2 2.08e-05 2.388e-05 3.036e-05 0.00% Amr::initSubcycle() 1 8.647e-06 1.104e-05 1.615e-05 0.00% Gravity::swapTimeLevels() 10 9.174e-06 1.202e-05 1.439e-05 0.00% Gravity::set_mass_offset() 10 9.36e-06 1.058e-05 1.169e-05 0.00% Castro::create_source_corrector() 10 8.503e-06 9.828e-06 1.163e-05 0.00% Castro::FluxRegCrseInit 10 7.533e-06 9.46e-06 1.086e-05 0.00% Castro::retry_advance_ctu() 10 4.392e-06 6.08e-06 7.121e-06 0.00% Castro::FluxRegFineAdd() 10 1.847e-06 2.452e-06 3.006e-06 0.00% DistributionMapping::Distribute() 1 8.59e-07 1.137e-06 1.566e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-24-g4fab19a02359) finalized