MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-24-g4fab19a02359) initialized Starting run at 05:42:52 UTC on 2023-03-28. Successfully read inputs file ... Castro git describe: 23.03-15-g8309823c4 AMReX git describe: 23.03-24-g4fab19a02 Microphysics git describe: 23.03-22-g7c3de88f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01565697 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373408107 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342369466 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.336116365 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33603088 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.362709935 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.337607519 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.315902208 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.317807793 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.317300242 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31718332 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010477749 seconds Ending run at 05:42:56 UTC on 2023-03-28. Run time = 3.573700546 Run time without initialization = 3.374506361 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.572 ... 3.573 ... 3.574 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2592 2.3758 2.4219 67.77% Gravity::make_radial_gravity() 21 0.3187 0.3269 0.3425 9.58% Castro::do_advance_ctu() 10 0.02716 0.0751 0.1938 5.42% Castro::estTimeStep() 21 0.03507 0.07957 0.1303 3.65% Castro::initData() 1 0.0389 0.08112 0.1269 3.55% amrex::Copy() 193 0.06783 0.07503 0.08306 2.32% FabArray::setVal() 143 0.06636 0.07363 0.08302 2.32% FabArray::ParallelCopy_finish() 41 0.03584 0.04864 0.06386 1.79% Castro::reset_internal_energy(Fab) 1008 0.04874 0.05041 0.05129 1.44% FabArray::ParallelCopy_nowait() 41 0.03989 0.04347 0.04469 1.25% Castro::normalize_species() 62 0.04178 0.04217 0.0431 1.21% FillPatchIterator::Initialize 41 0.02925 0.03532 0.03794 1.06% StateData::FillBoundary(geom) 41 0.03104 0.03521 0.03782 1.06% Castro::construct_new_gravity_source() 10 0.02409 0.02659 0.03088 0.86% Gravity::interpolate_monopole_grav() 21 0.02777 0.02833 0.0288 0.81% Castro::computeTemp() 63 0.01891 0.01976 0.02035 0.57% Castro::initialize_do_advance() 10 0.01317 0.01772 0.01966 0.55% VisMF::Write(FabArray) 2 0.01303 0.01379 0.01648 0.46% FabArray::Saxpy() 20 0.01383 0.01483 0.01542 0.43% Castro::initialize_advance() 10 0.009643 0.01199 0.01445 0.40% FabArray::setDomainBndry() 41 0.008897 0.01186 0.01316 0.37% MultiFab::contains_nan() 20 0.01047 0.01122 0.01201 0.34% Castro::construct_old_gravity_source() 10 0.008841 0.01075 0.0114 0.32% Amr::writePlotFile() 2 0.006977 0.009599 0.0104 0.29% Castro::initMFs() 1 0.00683 0.008001 0.01034 0.29% StateData::define() 4 0.005744 0.00661 0.008343 0.23% main() 1 0.004938 0.006104 0.006717 0.19% Castro::construct_new_source() 50 0.006237 0.006401 0.006559 0.18% Castro::enforce_min_density() 62 0.006019 0.006194 0.006357 0.18% Gravity::get_new_grav_vector() 11 0.003066 0.004095 0.005598 0.16% Castro::swap_state_time_levels() 10 0.003456 0.00465 0.004857 0.14% Amr::coarseTimeStep() 10 0.001948 0.002637 0.003383 0.09% Gravity::get_old_grav_vector() 10 0.001817 0.00253 0.002861 0.08% Castro::buildMetrics() 1 0.001623 0.001888 0.002393 0.07% Castro::finalize_do_advance() 10 0.0009901 0.001797 0.002221 0.06% Castro::expand_state() 10 0.0006584 0.0009661 0.001252 0.04% Amr::InitAmr() 1 0.0002742 0.0003634 0.0005351 0.01% Amr::timeStep() 10 0.000176 0.0002325 0.0004595 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002825 0.0002962 0.0003261 0.01% DistributionMapping::LeastUsedCPUs() 1 8.752e-06 0.0001981 0.0003008 0.01% Castro::clean_state() 62 0.000132 0.0001566 0.0001837 0.01% StateDataPhysBCFunct::() 41 8.229e-05 9.544e-05 0.0001217 0.00% Castro::finalize_advance() 10 8.466e-05 0.0001004 0.0001146 0.00% Amr::FinalizeInit() 1 4.004e-06 1.79e-05 0.0001076 0.00% Castro::enforce_consistent_e() 1 8.069e-05 8.935e-05 0.0001004 0.00% Castro::construct_old_source() 50 5.407e-05 7.412e-05 9.048e-05 0.00% FabArray::ParallelCopy() 41 6.715e-05 7.559e-05 8.481e-05 0.00% FillPatchSingleLevel 41 5.912e-05 6.724e-05 8.093e-05 0.00% Castro::do_new_sources() 10 5.858e-05 6.989e-05 8.089e-05 0.00% Castro::do_old_sources() 10 5.233e-05 6.463e-05 8e-05 0.00% Castro::Castro() 1 5.478e-05 6.241e-05 7.832e-05 0.00% Castro::advance() 10 4.04e-05 4.627e-05 6.502e-05 0.00% Castro::construct_new_gravity() 10 3.491e-05 4.277e-05 6.438e-05 0.00% FabArrayBase::getCPC() 41 4.148e-05 5.146e-05 6.315e-05 0.00% Castro::subcycle_advance_ctu() 10 3.833e-05 4.818e-05 5.607e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 3.883e-05 5.595e-05 0.00% Castro::apply_source_to_state() 20 3.57e-05 4.42e-05 4.983e-05 0.00% Castro::construct_old_gravity() 10 3.533e-05 3.93e-05 4.652e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.652e-05 2.684e-05 4.11e-05 0.00% Castro::enforce_speed_limit() 62 2.596e-05 2.776e-05 3.352e-05 0.00% Amr::defBaseLevel() 1 2.054e-05 2.409e-05 3.148e-05 0.00% FabArrayBase::CPC::define() 2 1.982e-05 2.419e-05 2.927e-05 0.00% Castro::check_for_nan() 20 2.076e-05 2.163e-05 2.295e-05 0.00% Castro::post_timestep() 10 1.177e-05 1.471e-05 1.751e-05 0.00% Amr::initSubcycle() 1 8.275e-06 1.089e-05 1.598e-05 0.00% Gravity::swapTimeLevels() 10 9.508e-06 1.229e-05 1.584e-05 0.00% Castro::FluxRegCrseInit 10 7.322e-06 9.199e-06 1.378e-05 0.00% Gravity::set_mass_offset() 10 1.001e-05 1.132e-05 1.317e-05 0.00% Castro::create_source_corrector() 10 7.619e-06 9.354e-06 1.084e-05 0.00% Castro::computeNewDt() 9 7.591e-06 8.12e-06 9.823e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.919e-06 4.786e-06 6.236e-06 0.00% Castro::retry_advance_ctu() 10 4.261e-06 5.31e-06 6.017e-06 0.00% Amr::InitializeInit() 1 2.123e-06 2.835e-06 5.976e-06 0.00% Castro::post_init() 1 3.168e-06 3.995e-06 5.346e-06 0.00% Castro::computeInitialDt() 2 3.557e-06 4.359e-06 5.176e-06 0.00% Castro::post_regrid() 1 1.934e-06 2.9e-06 4.474e-06 0.00% Castro::FluxRegFineAdd() 10 1.869e-06 2.347e-06 3.029e-06 0.00% Amr::init() 1 1.809e-06 2.233e-06 2.546e-06 0.00% Amr::initialInit() 1 1.549e-06 1.819e-06 2.377e-06 0.00% DistributionMapping::Distribute() 1 8.43e-07 1.287e-06 1.705e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.572 3.573 3.574 100.00% Amr::coarseTimeStep() 10 3.357 3.357 3.357 93.95% Amr::timeStep() 10 3.344 3.345 3.346 93.62% Castro::advance() 10 3.328 3.329 3.33 93.18% Castro::subcycle_advance_ctu() 10 3.242 3.249 3.254 91.06% Castro::do_advance_ctu() 10 3.242 3.249 3.254 91.06% Castro::construct_ctu_hydro_source() 10 2.259 2.376 2.422 67.77% Gravity::make_radial_gravity() 21 0.3363 0.3442 0.3578 10.01% Gravity::get_new_grav_vector() 11 0.2248 0.227 0.2289 6.40% Castro::construct_old_gravity() 10 0.1959 0.2014 0.2132 5.97% Gravity::get_old_grav_vector() 10 0.1952 0.2006 0.2125 5.94% Castro::construct_new_gravity() 10 0.2 0.2018 0.2029 5.68% Amr::init() 1 0.1985 0.1987 0.1988 5.56% FillPatchIterator::Initialize 41 0.1637 0.1748 0.1844 5.16% Amr::initialInit() 1 0.1826 0.1829 0.1831 5.12% Castro::initialize_do_advance() 10 0.1552 0.1688 0.1783 4.99% Amr::InitializeInit() 1 0.05945 0.1036 0.1538 4.30% Amr::defBaseLevel() 1 0.05945 0.1036 0.1538 4.30% FillPatchSingleLevel 41 0.1145 0.1276 0.1352 3.78% Castro::initData() 1 0.04281 0.08498 0.1308 3.66% Castro::estTimeStep() 21 0.03507 0.07957 0.1303 3.65% Castro::expand_state() 10 0.1096 0.1208 0.1299 3.63% Amr::FinalizeInit() 1 0.02906 0.07926 0.1236 3.46% Castro::clean_state() 62 0.116 0.118 0.1193 3.34% FabArray::ParallelCopy() 41 0.08048 0.09227 0.1039 2.91% Castro::computeInitialDt() 2 0.00207 0.05233 0.0966 2.70% Castro::initialize_advance() 10 0.07173 0.07628 0.08341 2.33% amrex::Copy() 193 0.06783 0.07503 0.08306 2.32% FabArray::setVal() 143 0.06636 0.07363 0.08302 2.32% Castro::do_new_sources() 10 0.06217 0.06876 0.07638 2.14% Castro::computeTemp() 63 0.06836 0.07047 0.07187 2.01% FabArray::ParallelCopy_finish() 41 0.03584 0.04864 0.06386 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04903 0.05071 0.05159 1.44% Castro::reset_internal_energy(Fab) 1008 0.04874 0.05041 0.05129 1.44% Castro::do_old_sources() 10 0.04516 0.04698 0.04785 1.34% FabArray::ParallelCopy_nowait() 41 0.03997 0.04355 0.04478 1.25% Castro::normalize_species() 62 0.04178 0.04217 0.0431 1.21% StateDataPhysBCFunct::() 41 0.03116 0.0353 0.03792 1.06% StateData::FillBoundary(geom) 41 0.03104 0.03521 0.03782 1.06% Castro::construct_new_source() 50 0.03039 0.03299 0.03736 1.05% Castro::construct_new_gravity_source() 10 0.02409 0.02659 0.03088 0.86% Gravity::interpolate_monopole_grav() 21 0.02777 0.02833 0.0288 0.81% Amr::writePlotFile() 2 0.02629 0.02638 0.0265 0.74% Castro::post_init() 1 0.02616 0.02632 0.02644 0.74% VisMF::Write(FabArray) 2 0.01303 0.01379 0.01648 0.46% Castro::post_timestep() 10 0.01574 0.01603 0.01625 0.45% Castro::apply_source_to_state() 20 0.01387 0.01487 0.01547 0.43% FabArray::Saxpy() 20 0.01383 0.01483 0.01542 0.43% Castro::Castro() 1 0.01049 0.01177 0.01453 0.41% FabArray::setDomainBndry() 41 0.008897 0.01186 0.01316 0.37% Castro::check_for_nan() 20 0.01049 0.01124 0.01203 0.34% MultiFab::contains_nan() 20 0.01047 0.01122 0.01201 0.34% Castro::construct_old_source() 50 0.008895 0.01082 0.01148 0.32% Castro::construct_old_gravity_source() 10 0.008841 0.01075 0.0114 0.32% Castro::initMFs() 1 0.00683 0.008001 0.01034 0.29% Castro::computeNewDt() 9 0.008451 0.00846 0.008469 0.24% AmrLevel::AmrLevel(dm) 1 0.005761 0.006637 0.008384 0.23% StateData::define() 4 0.005744 0.00661 0.008343 0.23% Castro::enforce_min_density() 62 0.006019 0.006194 0.006357 0.18% Castro::swap_state_time_levels() 10 0.003456 0.00465 0.004857 0.14% Castro::finalize_advance() 10 0.002923 0.00343 0.004444 0.12% Castro::buildMetrics() 1 0.001741 0.002031 0.002597 0.07% Castro::finalize_do_advance() 10 0.0009901 0.001797 0.002221 0.06% Castro::post_regrid() 1 0.001618 0.001672 0.00175 0.05% Amr::InitAmr() 1 0.0002838 0.0003743 0.0005453 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.401e-05 0.0002042 0.0003086 0.01% DistributionMapping::LeastUsedCPUs() 1 8.752e-06 0.0001981 0.0003008 0.01% Castro::enforce_consistent_e() 1 8.069e-05 8.935e-05 0.0001004 0.00% FabArrayBase::getCPC() 41 6.846e-05 7.564e-05 8.619e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 3.883e-05 5.595e-05 0.00% Castro::enforce_speed_limit() 62 2.596e-05 2.776e-05 3.352e-05 0.00% FabArrayBase::CPC::define() 2 1.982e-05 2.419e-05 2.927e-05 0.00% Amr::initSubcycle() 1 8.275e-06 1.089e-05 1.598e-05 0.00% Gravity::swapTimeLevels() 10 9.508e-06 1.229e-05 1.584e-05 0.00% Castro::FluxRegCrseInit 10 7.322e-06 9.199e-06 1.378e-05 0.00% Gravity::set_mass_offset() 10 1.001e-05 1.132e-05 1.317e-05 0.00% Castro::create_source_corrector() 10 7.619e-06 9.354e-06 1.084e-05 0.00% Castro::retry_advance_ctu() 10 4.261e-06 5.31e-06 6.017e-06 0.00% Castro::FluxRegFineAdd() 10 1.869e-06 2.347e-06 3.029e-06 0.00% DistributionMapping::Distribute() 1 8.43e-07 1.287e-06 1.705e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-24-g4fab19a02359) finalized