MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-28-g831d1487fa19) initialized Starting run at 20:00:12 UTC on 2023-03-29. Successfully read inputs file ... Castro git describe: 23.03-18-g1be2962ce AMReX git describe: 23.03-28-g831d1487f Microphysics git describe: 23.03-23-g27bca043 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015567981 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358106096 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.387274006 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.32708168 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327310749 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.356618093 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.338356464 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31176178 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312240361 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312354429 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.31257285 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010016794 seconds Ending run at 20:00:15 UTC on 2023-03-29. Run time = 3.542929616 Run time without initialization = 3.361288329 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.542 ... 3.543 ... 3.543 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2964 2.3548 2.4249 68.44% Gravity::make_radial_gravity() 21 0.3149 0.3226 0.3346 9.44% Castro::do_advance_ctu() 10 0.02934 0.1018 0.1616 4.56% Castro::initData() 1 0.03862 0.078 0.1138 3.21% Castro::estTimeStep() 21 0.02388 0.06627 0.1129 3.19% FabArray::setVal() 143 0.06486 0.07292 0.08397 2.37% amrex::Copy() 193 0.06178 0.07096 0.07785 2.20% FabArray::ParallelCopy_finish() 41 0.03791 0.04873 0.07264 2.05% Castro::reset_internal_energy(Fab) 1008 0.04857 0.0502 0.05265 1.49% Castro::normalize_species() 62 0.04164 0.04228 0.04309 1.22% FabArray::ParallelCopy_nowait() 41 0.03669 0.04113 0.04284 1.21% StateData::FillBoundary(geom) 41 0.03224 0.03471 0.03774 1.07% FillPatchIterator::Initialize 41 0.02863 0.0334 0.03605 1.02% Castro::construct_new_gravity_source() 10 0.02325 0.0262 0.03064 0.86% Gravity::interpolate_monopole_grav() 21 0.0277 0.02798 0.02826 0.80% Castro::computeTemp() 63 0.01953 0.02 0.02073 0.59% Castro::initialize_do_advance() 10 0.0119 0.01739 0.01979 0.56% VisMF::Write(FabArray) 2 0.01303 0.01361 0.0162 0.46% FabArray::Saxpy() 20 0.0125 0.01388 0.01468 0.41% Castro::initialize_advance() 10 0.008329 0.01114 0.01442 0.41% MultiFab::contains_nan() 20 0.01107 0.01189 0.01261 0.36% FabArray::setDomainBndry() 41 0.008796 0.01115 0.01242 0.35% Amr::writePlotFile() 2 0.00681 0.009665 0.01101 0.31% Castro::construct_old_gravity_source() 10 0.00761 0.01018 0.01077 0.30% Castro::initMFs() 1 0.007121 0.007389 0.009064 0.26% main() 1 0.00567 0.006359 0.006874 0.19% Castro::enforce_min_density() 62 0.005762 0.006154 0.006842 0.19% StateData::define() 4 0.005781 0.005898 0.00663 0.19% Castro::construct_new_source() 50 0.005929 0.006265 0.006492 0.18% Gravity::get_new_grav_vector() 11 0.003062 0.003899 0.005587 0.16% Castro::swap_state_time_levels() 10 0.003379 0.004463 0.004827 0.14% Amr::coarseTimeStep() 10 0.001185 0.002465 0.003575 0.10% Gravity::get_old_grav_vector() 10 0.001744 0.002271 0.002691 0.08% Castro::buildMetrics() 1 0.001632 0.001682 0.001915 0.05% Castro::finalize_do_advance() 10 0.0005894 0.001555 0.001868 0.05% Castro::expand_state() 10 0.0006301 0.0008279 0.0009681 0.03% Amr::InitAmr() 1 0.0002743 0.0003003 0.0004263 0.01% Amr::timeStep() 10 0.000198 0.000246 0.0004014 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002801 0.0002999 0.0003403 0.01% Castro::clean_state() 62 0.0001486 0.000177 0.0002105 0.01% DistributionMapping::LeastUsedCPUs() 1 8.141e-06 0.0001373 0.0001606 0.00% Castro::finalize_advance() 10 8.071e-05 0.0001024 0.0001275 0.00% StateDataPhysBCFunct::() 41 8.543e-05 9.099e-05 0.0001019 0.00% Castro::enforce_consistent_e() 1 7.599e-05 8.867e-05 9.936e-05 0.00% FabArray::ParallelCopy() 41 6.4e-05 7.153e-05 9.534e-05 0.00% Castro::Castro() 1 5.563e-05 6.759e-05 9.329e-05 0.00% Castro::construct_old_source() 50 5.261e-05 6.86e-05 8.497e-05 0.00% FillPatchSingleLevel 41 5.771e-05 6.602e-05 8.103e-05 0.00% Castro::do_old_sources() 10 4.959e-05 6.42e-05 7.936e-05 0.00% Amr::FinalizeInit() 1 4.057e-06 1.459e-05 7.686e-05 0.00% Amr::writeSmallPlotFile() 1 2.532e-05 5.426e-05 7.036e-05 0.00% Castro::do_new_sources() 10 5.307e-05 6.504e-05 6.781e-05 0.00% FabArrayBase::getCPC() 41 4.035e-05 5.716e-05 6.562e-05 0.00% Castro::advance() 10 3.268e-05 4.141e-05 5.229e-05 0.00% Castro::subcycle_advance_ctu() 10 3.557e-05 4.148e-05 5.157e-05 0.00% Castro::apply_source_to_state() 20 3.707e-05 4.407e-05 4.953e-05 0.00% Castro::construct_new_gravity() 10 3.533e-05 4.157e-05 4.768e-05 0.00% Castro::construct_old_gravity() 10 3.287e-05 3.909e-05 4.305e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.066e-05 2.819e-05 3.418e-05 0.00% Gravity::swapTimeLevels() 10 1.145e-05 1.5e-05 3.388e-05 0.00% Castro::enforce_speed_limit() 62 2.446e-05 2.687e-05 3.176e-05 0.00% FabArrayBase::CPC::define() 2 2.129e-05 2.327e-05 2.955e-05 0.00% Amr::defBaseLevel() 1 1.775e-05 2.163e-05 2.871e-05 0.00% Castro::check_for_nan() 20 2.429e-05 2.629e-05 2.856e-05 0.00% Castro::post_timestep() 10 1.317e-05 1.611e-05 1.901e-05 0.00% Amr::initSubcycle() 1 8.815e-06 1.03e-05 1.625e-05 0.00% Gravity::set_mass_offset() 10 9.812e-06 1.048e-05 1.148e-05 0.00% Amr::init() 1 1.688e-06 4.092e-06 1.105e-05 0.00% Castro::create_source_corrector() 10 8.374e-06 9.601e-06 1.086e-05 0.00% Castro::FluxRegCrseInit 10 6.356e-06 8.667e-06 1.033e-05 0.00% Castro::computeNewDt() 9 7.342e-06 8.42e-06 9.387e-06 0.00% Amr::initialInit() 1 1.332e-06 2.325e-06 7.786e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.398e-06 5.091e-06 6.401e-06 0.00% Castro::retry_advance_ctu() 10 4.656e-06 5.459e-06 5.844e-06 0.00% Castro::computeInitialDt() 2 2.664e-06 4.31e-06 5.199e-06 0.00% Amr::InitializeInit() 1 1.975e-06 2.566e-06 4.986e-06 0.00% Castro::post_init() 1 2.573e-06 3.758e-06 4.632e-06 0.00% Castro::post_regrid() 1 2.122e-06 3.244e-06 4.325e-06 0.00% Castro::FluxRegFineAdd() 10 1.864e-06 2.367e-06 2.988e-06 0.00% DistributionMapping::Distribute() 1 1.019e-06 1.273e-06 1.591e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.542 3.543 3.543 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 94.40% Amr::timeStep() 10 3.331 3.332 3.334 94.09% Castro::advance() 10 3.315 3.316 3.317 93.62% Castro::subcycle_advance_ctu() 10 3.229 3.237 3.242 91.51% Castro::do_advance_ctu() 10 3.229 3.237 3.242 91.51% Castro::construct_ctu_hydro_source() 10 2.296 2.355 2.425 68.44% Gravity::make_radial_gravity() 21 0.3314 0.3391 0.3486 9.84% Gravity::get_new_grav_vector() 11 0.2177 0.2221 0.2244 6.33% Castro::construct_old_gravity() 10 0.19 0.1979 0.2081 5.87% Gravity::get_old_grav_vector() 10 0.1893 0.1972 0.2074 5.85% Castro::construct_new_gravity() 10 0.1925 0.1964 0.198 5.59% FillPatchIterator::Initialize 41 0.15 0.1694 0.1817 5.13% Amr::init() 1 0.181 0.1811 0.1812 5.11% Castro::initialize_do_advance() 10 0.148 0.1651 0.1772 5.00% Amr::initialInit() 1 0.1651 0.1652 0.1654 4.67% FillPatchSingleLevel 41 0.1105 0.1249 0.1443 4.07% Amr::InitializeInit() 1 0.06019 0.09999 0.1358 3.83% Amr::defBaseLevel() 1 0.06019 0.09999 0.1358 3.83% Castro::expand_state() 10 0.09779 0.1174 0.1297 3.66% Castro::clean_state() 62 0.1159 0.1182 0.1224 3.46% Castro::initData() 1 0.0426 0.08206 0.118 3.33% Castro::estTimeStep() 21 0.02388 0.06627 0.1129 3.19% FabArray::ParallelCopy() 41 0.07809 0.09001 0.1095 3.09% Amr::FinalizeInit() 1 0.02929 0.06524 0.1051 2.97% FabArray::setVal() 143 0.06486 0.07292 0.08397 2.37% Castro::initialize_advance() 10 0.07035 0.07496 0.08349 2.36% amrex::Copy() 193 0.06178 0.07096 0.07785 2.20% Castro::computeInitialDt() 2 0.002035 0.03785 0.07768 2.19% Castro::do_new_sources() 10 0.06051 0.06689 0.07651 2.16% Castro::computeTemp() 63 0.06867 0.0705 0.07368 2.08% FabArray::ParallelCopy_finish() 41 0.03791 0.04873 0.07264 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04886 0.0505 0.05295 1.49% Castro::reset_internal_energy(Fab) 1008 0.04857 0.0502 0.05265 1.49% Castro::do_old_sources() 10 0.04028 0.04517 0.04622 1.30% Castro::normalize_species() 62 0.04164 0.04228 0.04309 1.22% FabArray::ParallelCopy_nowait() 41 0.03678 0.04121 0.04293 1.21% StateDataPhysBCFunct::() 41 0.03233 0.0348 0.03784 1.07% StateData::FillBoundary(geom) 41 0.03224 0.03471 0.03774 1.07% Castro::construct_new_source() 50 0.02943 0.03247 0.03708 1.05% Castro::construct_new_gravity_source() 10 0.02325 0.0262 0.03064 0.86% Gravity::interpolate_monopole_grav() 21 0.0277 0.02798 0.02826 0.80% Castro::post_init() 1 0.02674 0.02686 0.02699 0.76% Amr::writePlotFile() 2 0.0258 0.02599 0.0262 0.74% Castro::post_timestep() 10 0.01566 0.01618 0.0165 0.47% VisMF::Write(FabArray) 2 0.01303 0.01361 0.0162 0.46% Castro::apply_source_to_state() 20 0.01255 0.01393 0.01472 0.42% FabArray::Saxpy() 20 0.0125 0.01388 0.01468 0.41% Castro::Castro() 1 0.01159 0.01184 0.01265 0.36% Castro::check_for_nan() 20 0.0111 0.01192 0.01263 0.36% MultiFab::contains_nan() 20 0.01107 0.01189 0.01261 0.36% FabArray::setDomainBndry() 41 0.008796 0.01115 0.01242 0.35% Castro::construct_old_source() 50 0.007664 0.01025 0.01084 0.31% Castro::construct_old_gravity_source() 10 0.00761 0.01018 0.01077 0.30% Castro::initMFs() 1 0.007121 0.007389 0.009064 0.26% Castro::computeNewDt() 9 0.008582 0.008588 0.008599 0.24% Castro::enforce_min_density() 62 0.005762 0.006154 0.006842 0.19% AmrLevel::AmrLevel(dm) 1 0.005813 0.005927 0.006655 0.19% StateData::define() 4 0.005781 0.005898 0.00663 0.19% Castro::swap_state_time_levels() 10 0.003379 0.004463 0.004827 0.14% Castro::finalize_advance() 10 0.002933 0.003637 0.004586 0.13% Castro::buildMetrics() 1 0.001762 0.001819 0.002072 0.06% Castro::finalize_do_advance() 10 0.0005894 0.001555 0.001868 0.05% Castro::post_regrid() 1 0.001526 0.001607 0.001677 0.05% Amr::InitAmr() 1 0.0002837 0.0003106 0.0004425 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.275e-05 0.0001436 0.0001683 0.00% DistributionMapping::LeastUsedCPUs() 1 8.141e-06 0.0001373 0.0001606 0.00% Castro::enforce_consistent_e() 1 7.599e-05 8.867e-05 9.936e-05 0.00% FabArrayBase::getCPC() 41 6.372e-05 8.043e-05 9.071e-05 0.00% Amr::writeSmallPlotFile() 1 2.532e-05 5.426e-05 7.036e-05 0.00% Gravity::swapTimeLevels() 10 1.145e-05 1.5e-05 3.388e-05 0.00% Castro::enforce_speed_limit() 62 2.446e-05 2.687e-05 3.176e-05 0.00% FabArrayBase::CPC::define() 2 2.129e-05 2.327e-05 2.955e-05 0.00% Amr::initSubcycle() 1 8.815e-06 1.03e-05 1.625e-05 0.00% Gravity::set_mass_offset() 10 9.812e-06 1.048e-05 1.148e-05 0.00% Castro::create_source_corrector() 10 8.374e-06 9.601e-06 1.086e-05 0.00% Castro::FluxRegCrseInit 10 6.356e-06 8.667e-06 1.033e-05 0.00% Castro::retry_advance_ctu() 10 4.656e-06 5.459e-06 5.844e-06 0.00% Castro::FluxRegFineAdd() 10 1.864e-06 2.367e-06 2.988e-06 0.00% DistributionMapping::Distribute() 1 1.019e-06 1.273e-06 1.591e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-28-g831d1487fa19) finalized