MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-28-g831d1487fa19) initialized Starting run at 05:41:32 UTC on 2023-03-29. Successfully read inputs file ... Castro git describe: 23.03-17-gf84bee6a2 AMReX git describe: 23.03-28-g831d1487f Microphysics git describe: 23.03-23-g27bca043 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016667726 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361901616 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352306486 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.357561153 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326930724 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354761337 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335100342 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310791784 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310985217 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311878042 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312847449 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010486046 seconds Ending run at 05:41:35 UTC on 2023-03-29. Run time = 3.535995347 Run time without initialization = 3.353284586 Average number of zones advanced per microsecond: 0.782 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.535 ... 3.536 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3041 2.3449 2.3910 67.62% Gravity::make_radial_gravity() 21 0.3306 0.343 0.3534 9.99% Castro::do_advance_ctu() 10 0.02881 0.08084 0.1227 3.47% Castro::initData() 1 0.04025 0.07738 0.1128 3.19% Castro::estTimeStep() 21 0.03682 0.06593 0.1097 3.10% FabArray::setVal() 143 0.05917 0.07003 0.08108 2.29% amrex::Copy() 193 0.06405 0.07059 0.07848 2.22% FabArray::ParallelCopy_finish() 41 0.04221 0.05351 0.06966 1.97% Castro::reset_internal_energy(Fab) 1008 0.04895 0.05028 0.05358 1.52% Castro::normalize_species() 62 0.04191 0.0427 0.04454 1.26% FabArray::ParallelCopy_nowait() 41 0.03741 0.04092 0.04231 1.20% StateData::FillBoundary(geom) 41 0.03244 0.03594 0.03924 1.11% FillPatchIterator::Initialize 41 0.02988 0.03356 0.03548 1.00% Castro::construct_new_gravity_source() 10 0.0231 0.02593 0.03061 0.87% Gravity::interpolate_monopole_grav() 21 0.02782 0.02814 0.02904 0.82% Castro::computeTemp() 63 0.01786 0.01972 0.02156 0.61% Castro::initialize_do_advance() 10 0.01284 0.01724 0.01956 0.55% VisMF::Write(FabArray) 2 0.0138 0.01455 0.01748 0.49% FabArray::Saxpy() 20 0.0127 0.01362 0.01457 0.41% Castro::initialize_advance() 10 0.008273 0.01105 0.01402 0.40% MultiFab::contains_nan() 20 0.01105 0.01217 0.01355 0.38% FabArray::setDomainBndry() 41 0.009202 0.01107 0.0124 0.35% Amr::writePlotFile() 2 0.007129 0.01006 0.01112 0.31% Castro::construct_old_gravity_source() 10 0.008533 0.009972 0.01037 0.29% StateData::define() 4 0.005845 0.006648 0.008767 0.25% Castro::initMFs() 1 0.006862 0.00731 0.008384 0.24% main() 1 0.005583 0.006577 0.00701 0.20% Castro::construct_new_source() 50 0.005596 0.00618 0.006889 0.19% Castro::enforce_min_density() 62 0.005821 0.006215 0.006738 0.19% Gravity::get_new_grav_vector() 11 0.003004 0.003821 0.005643 0.16% Castro::swap_state_time_levels() 10 0.003372 0.004511 0.005375 0.15% Amr::coarseTimeStep() 10 0.001621 0.002293 0.002782 0.08% Gravity::get_old_grav_vector() 10 0.001839 0.002314 0.002722 0.08% Castro::buildMetrics() 1 0.001601 0.001728 0.002198 0.06% Castro::finalize_do_advance() 10 0.0006552 0.0015 0.001821 0.05% Castro::expand_state() 10 0.0006179 0.0008067 0.0009871 0.03% Amr::InitAmr() 1 0.0002787 0.000369 0.0006651 0.02% Amr::timeStep() 10 0.0001621 0.000235 0.0004856 0.01% DistributionMapping::LeastUsedCPUs() 1 6.902e-06 0.0003281 0.0004268 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0002928 0.0003119 0.01% Castro::clean_state() 62 0.0001378 0.000179 0.0002268 0.01% Castro::finalize_advance() 10 8.04e-05 0.0001044 0.000128 0.00% StateDataPhysBCFunct::() 41 8.492e-05 9.486e-05 0.0001274 0.00% Castro::enforce_consistent_e() 1 7.89e-05 8.626e-05 9.557e-05 0.00% Castro::Castro() 1 4.868e-05 6.145e-05 8.27e-05 0.00% FabArray::ParallelCopy() 41 6.783e-05 7.155e-05 8.046e-05 0.00% Castro::do_old_sources() 10 5.546e-05 6.305e-05 7.806e-05 0.00% Castro::construct_old_source() 50 4.879e-05 6.444e-05 7.536e-05 0.00% Castro::do_new_sources() 10 5.348e-05 6.331e-05 7.295e-05 0.00% Amr::FinalizeInit() 1 4.095e-06 1.346e-05 7.259e-05 0.00% FillPatchSingleLevel 41 6.2e-05 6.513e-05 6.785e-05 0.00% FabArrayBase::getCPC() 41 4.246e-05 5.165e-05 5.996e-05 0.00% Amr::writeSmallPlotFile() 1 2.665e-05 4.212e-05 5.873e-05 0.00% Castro::apply_source_to_state() 20 3.161e-05 4.275e-05 5.147e-05 0.00% Castro::construct_new_gravity() 10 3.289e-05 3.858e-05 5.147e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.916e-05 3.694e-05 4.922e-05 0.00% Castro::subcycle_advance_ctu() 10 3.459e-05 4.15e-05 4.835e-05 0.00% Castro::advance() 10 3.535e-05 4.207e-05 4.613e-05 0.00% Castro::construct_old_gravity() 10 3.078e-05 3.745e-05 4.191e-05 0.00% Amr::defBaseLevel() 1 1.661e-05 2.525e-05 3.155e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.394e-05 3.032e-05 0.00% Castro::enforce_speed_limit() 62 2.535e-05 2.679e-05 2.888e-05 0.00% Castro::check_for_nan() 20 2.284e-05 2.398e-05 2.591e-05 0.00% Amr::initSubcycle() 1 8.934e-06 1.138e-05 1.675e-05 0.00% Castro::post_timestep() 10 1.338e-05 1.504e-05 1.59e-05 0.00% Gravity::swapTimeLevels() 10 8.104e-06 1.199e-05 1.433e-05 0.00% Gravity::set_mass_offset() 10 1.034e-05 1.124e-05 1.188e-05 0.00% Castro::create_source_corrector() 10 7.653e-06 1.003e-05 1.186e-05 0.00% Castro::FluxRegCrseInit 10 7.172e-06 8.317e-06 9.96e-06 0.00% Castro::computeNewDt() 9 7.417e-06 8.226e-06 8.838e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.716e-06 5.435e-06 6.835e-06 0.00% Castro::retry_advance_ctu() 10 4.152e-06 5.457e-06 6.415e-06 0.00% Amr::InitializeInit() 1 2.013e-06 2.944e-06 6.079e-06 0.00% Castro::computeInitialDt() 2 3.56e-06 4.181e-06 5.123e-06 0.00% Castro::post_regrid() 1 2.12e-06 3.291e-06 4.538e-06 0.00% Castro::post_init() 1 2.713e-06 3.449e-06 4.324e-06 0.00% Castro::FluxRegFineAdd() 10 2.034e-06 2.472e-06 3.78e-06 0.00% Amr::init() 1 1.714e-06 2.268e-06 2.783e-06 0.00% Amr::initialInit() 1 1.161e-06 1.699e-06 2.363e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.169e-06 1.39e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.535 3.536 3.536 100.00% Amr::coarseTimeStep() 10 3.336 3.336 3.336 94.34% Amr::timeStep() 10 3.323 3.324 3.325 94.02% Castro::advance() 10 3.307 3.308 3.309 93.57% Castro::subcycle_advance_ctu() 10 3.221 3.23 3.237 91.54% Castro::do_advance_ctu() 10 3.221 3.23 3.237 91.54% Castro::construct_ctu_hydro_source() 10 2.304 2.345 2.391 67.62% Gravity::make_radial_gravity() 21 0.3457 0.3593 0.3715 10.51% Castro::construct_old_gravity() 10 0.208 0.2175 0.2272 6.43% Gravity::get_old_grav_vector() 10 0.2073 0.2168 0.2266 6.41% Gravity::get_new_grav_vector() 11 0.2206 0.2241 0.2261 6.39% Castro::construct_new_gravity() 10 0.1932 0.1963 0.1976 5.59% FillPatchIterator::Initialize 41 0.1642 0.1753 0.1866 5.28% Amr::init() 1 0.1818 0.1822 0.1823 5.15% Castro::initialize_do_advance() 10 0.157 0.1672 0.1735 4.91% Amr::initialInit() 1 0.165 0.1654 0.1659 4.69% FillPatchSingleLevel 41 0.124 0.1307 0.1466 4.15% Amr::InitializeInit() 1 0.0626 0.09933 0.1341 3.79% Amr::defBaseLevel() 1 0.06259 0.09932 0.1341 3.79% Castro::expand_state() 10 0.1093 0.1195 0.1267 3.58% Castro::clean_state() 62 0.115 0.1184 0.1258 3.56% Castro::initData() 1 0.04382 0.08125 0.1169 3.30% Castro::estTimeStep() 21 0.03682 0.06593 0.1097 3.10% FabArray::ParallelCopy() 41 0.08467 0.09458 0.1072 3.03% Amr::FinalizeInit() 1 0.03121 0.06612 0.1024 2.90% Castro::initialize_advance() 10 0.06753 0.07391 0.08388 2.37% FabArray::setVal() 143 0.05917 0.07003 0.08108 2.29% amrex::Copy() 193 0.06405 0.07059 0.07848 2.22% Castro::do_new_sources() 10 0.05996 0.06612 0.07603 2.15% Castro::computeTemp() 63 0.06724 0.07029 0.07544 2.13% Castro::computeInitialDt() 2 0.002161 0.03685 0.07325 2.07% FabArray::ParallelCopy_finish() 41 0.04221 0.05351 0.06966 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04925 0.05057 0.05388 1.52% Castro::reset_internal_energy(Fab) 1008 0.04895 0.05028 0.05358 1.52% Castro::do_old_sources() 10 0.04384 0.04499 0.04728 1.34% Castro::normalize_species() 62 0.04191 0.0427 0.04454 1.26% FabArray::ParallelCopy_nowait() 41 0.03748 0.041 0.04239 1.20% StateDataPhysBCFunct::() 41 0.03253 0.03603 0.03933 1.11% StateData::FillBoundary(geom) 41 0.03244 0.03594 0.03924 1.11% Castro::construct_new_source() 50 0.02914 0.03211 0.03693 1.04% Castro::construct_new_gravity_source() 10 0.0231 0.02593 0.03061 0.87% Castro::post_init() 1 0.02854 0.02881 0.02918 0.83% Gravity::interpolate_monopole_grav() 21 0.02782 0.02814 0.02904 0.82% Amr::writePlotFile() 2 0.02672 0.02729 0.02765 0.78% VisMF::Write(FabArray) 2 0.0138 0.01455 0.01748 0.49% Castro::post_timestep() 10 0.01506 0.01584 0.01633 0.46% Castro::apply_source_to_state() 20 0.01274 0.01366 0.01461 0.41% FabArray::Saxpy() 20 0.0127 0.01362 0.01457 0.41% Castro::check_for_nan() 20 0.01108 0.0122 0.01358 0.38% MultiFab::contains_nan() 20 0.01105 0.01217 0.01355 0.38% FabArray::setDomainBndry() 41 0.009202 0.01107 0.0124 0.35% Castro::Castro() 1 0.01037 0.01103 0.01182 0.33% Castro::construct_old_source() 50 0.008582 0.01004 0.01044 0.30% Castro::construct_old_gravity_source() 10 0.008533 0.009972 0.01037 0.29% AmrLevel::AmrLevel(dm) 1 0.005885 0.006685 0.008815 0.25% StateData::define() 4 0.005845 0.006648 0.008767 0.25% Castro::computeNewDt() 9 0.008549 0.008554 0.008565 0.24% Castro::initMFs() 1 0.006862 0.00731 0.008384 0.24% Castro::enforce_min_density() 62 0.005821 0.006215 0.006738 0.19% Castro::swap_state_time_levels() 10 0.003372 0.004511 0.005375 0.15% Castro::finalize_advance() 10 0.002937 0.003567 0.004309 0.12% Castro::buildMetrics() 1 0.001725 0.00186 0.002347 0.07% Castro::post_regrid() 1 0.00152 0.00165 0.00198 0.06% Castro::finalize_do_advance() 10 0.0006552 0.0015 0.001821 0.05% Amr::InitAmr() 1 0.0002887 0.0003804 0.0006812 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.185e-05 0.0003347 0.0004348 0.01% DistributionMapping::LeastUsedCPUs() 1 6.902e-06 0.0003281 0.0004268 0.01% Castro::enforce_consistent_e() 1 7.89e-05 8.626e-05 9.557e-05 0.00% FabArrayBase::getCPC() 41 6.447e-05 7.559e-05 8.238e-05 0.00% Amr::writeSmallPlotFile() 1 2.665e-05 4.212e-05 5.873e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.394e-05 3.032e-05 0.00% Castro::enforce_speed_limit() 62 2.535e-05 2.679e-05 2.888e-05 0.00% Amr::initSubcycle() 1 8.934e-06 1.138e-05 1.675e-05 0.00% Gravity::swapTimeLevels() 10 8.104e-06 1.199e-05 1.433e-05 0.00% Gravity::set_mass_offset() 10 1.034e-05 1.124e-05 1.188e-05 0.00% Castro::create_source_corrector() 10 7.653e-06 1.003e-05 1.186e-05 0.00% Castro::FluxRegCrseInit 10 7.172e-06 8.317e-06 9.96e-06 0.00% Castro::retry_advance_ctu() 10 4.152e-06 5.457e-06 6.415e-06 0.00% Castro::FluxRegFineAdd() 10 2.034e-06 2.472e-06 3.78e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.169e-06 1.39e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 60 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-28-g831d1487fa19) finalized