MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.03-29-gb41c44166e12) initialized Starting run at 05:39:28 UTC on 2023-03-30. Successfully read inputs file ... Castro git describe: 23.03-18-g1be2962ce AMReX git describe: 23.03-29-gb41c44166 Microphysics git describe: 23.03-23-g27bca043 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016396195 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358907811 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.351578619 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334530562 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330343497 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357787354 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33770335 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310353508 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311444112 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311516871 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311912613 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010566666 seconds Ending run at 05:39:31 UTC on 2023-03-30. Run time = 3.535675611 Run time without initialization = 3.33446578 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.534 ... 3.535 ... 3.536 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3212 2.3500 2.3835 67.41% Gravity::make_radial_gravity() 21 0.3174 0.3321 0.3479 9.84% Castro::estTimeStep() 21 0.0247 0.08368 0.1303 3.68% Castro::initData() 1 0.04038 0.07911 0.1287 3.64% Castro::do_advance_ctu() 10 0.01903 0.05561 0.08769 2.48% amrex::Copy() 193 0.06012 0.0735 0.08503 2.40% FabArray::setVal() 143 0.06417 0.07188 0.08452 2.39% FabArray::ParallelCopy_finish() 41 0.03419 0.05422 0.08037 2.27% Castro::reset_internal_energy(Fab) 1008 0.04857 0.04958 0.05059 1.43% Castro::normalize_species() 62 0.04141 0.04232 0.04452 1.26% FabArray::ParallelCopy_nowait() 41 0.0385 0.0427 0.04416 1.25% StateData::FillBoundary(geom) 41 0.03271 0.03554 0.03992 1.13% FillPatchIterator::Initialize 41 0.02925 0.03533 0.039 1.10% Castro::construct_new_gravity_source() 10 0.02343 0.02687 0.03229 0.91% Gravity::interpolate_monopole_grav() 21 0.02789 0.02826 0.02967 0.84% Castro::initialize_do_advance() 10 0.01266 0.01815 0.02079 0.59% Castro::computeTemp() 63 0.01811 0.01962 0.02052 0.58% VisMF::Write(FabArray) 2 0.01397 0.01465 0.01748 0.49% FabArray::Saxpy() 20 0.01263 0.01428 0.01512 0.43% Castro::initialize_advance() 10 0.005807 0.01065 0.0139 0.39% FabArray::setDomainBndry() 41 0.008935 0.01173 0.01303 0.37% MultiFab::contains_nan() 20 0.01136 0.01209 0.01278 0.36% Castro::construct_old_gravity_source() 10 0.007726 0.0106 0.0113 0.32% Amr::writePlotFile() 2 0.006941 0.009844 0.01056 0.30% Castro::initMFs() 1 0.007076 0.007604 0.009044 0.26% Gravity::get_new_grav_vector() 11 0.003274 0.004341 0.008352 0.24% main() 1 0.005663 0.006454 0.006996 0.20% StateData::define() 4 0.00577 0.006023 0.006695 0.19% Castro::construct_new_source() 50 0.005812 0.006192 0.006461 0.18% Castro::enforce_min_density() 62 0.005646 0.00603 0.006253 0.18% Castro::swap_state_time_levels() 10 0.003385 0.004541 0.004805 0.14% Amr::coarseTimeStep() 10 0.001557 0.002363 0.003081 0.09% Gravity::get_old_grav_vector() 10 0.001889 0.002537 0.003051 0.09% Castro::finalize_do_advance() 10 0.0006569 0.001559 0.00194 0.05% Castro::buildMetrics() 1 0.001647 0.00173 0.001918 0.05% Castro::expand_state() 10 0.0008533 0.001093 0.00121 0.03% Amr::timeStep() 10 0.0001755 0.0002504 0.000593 0.02% Amr::InitAmr() 1 0.0002786 0.0003054 0.0004447 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002862 0.0002962 0.0003102 0.01% Castro::clean_state() 62 0.0001451 0.0001531 0.0001625 0.00% DistributionMapping::LeastUsedCPUs() 1 7.883e-06 0.0001337 0.0001574 0.00% Castro::finalize_advance() 10 8.886e-05 0.0001062 0.0001277 0.00% StateDataPhysBCFunct::() 41 8.539e-05 9.563e-05 0.0001252 0.00% Castro::enforce_consistent_e() 1 7.86e-05 8.863e-05 0.0001047 0.00% FillPatchSingleLevel 41 6.06e-05 6.878e-05 9.093e-05 0.00% Castro::Castro() 1 5.586e-05 6.7e-05 8.841e-05 0.00% Castro::construct_old_source() 50 4.917e-05 7.276e-05 8.23e-05 0.00% FabArray::ParallelCopy() 41 6.334e-05 7.184e-05 7.999e-05 0.00% Castro::do_old_sources() 10 5.007e-05 6.567e-05 7.573e-05 0.00% Amr::FinalizeInit() 1 4.179e-06 1.42e-05 7.448e-05 0.00% FabArrayBase::getCPC() 41 3.896e-05 5.892e-05 6.949e-05 0.00% Castro::do_new_sources() 10 5.993e-05 6.492e-05 6.836e-05 0.00% Castro::subcycle_advance_ctu() 10 3.572e-05 4.714e-05 6.692e-05 0.00% Castro::apply_source_to_state() 20 4.153e-05 4.753e-05 6.077e-05 0.00% Amr::writeSmallPlotFile() 1 2.651e-05 4.476e-05 5.811e-05 0.00% Castro::construct_new_gravity() 10 3.533e-05 4.02e-05 4.978e-05 0.00% Castro::advance() 10 3.483e-05 4.159e-05 4.967e-05 0.00% Castro::construct_old_gravity() 10 3.289e-05 3.83e-05 4.362e-05 0.00% Amr::defBaseLevel() 1 1.656e-05 2.972e-05 4.252e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.477e-05 2.752e-05 3.27e-05 0.00% Castro::enforce_speed_limit() 62 2.628e-05 2.754e-05 3.179e-05 0.00% FabArrayBase::CPC::define() 2 2.109e-05 2.444e-05 2.784e-05 0.00% Castro::check_for_nan() 20 2.087e-05 2.399e-05 2.774e-05 0.00% Castro::post_timestep() 10 1.333e-05 2.04e-05 2.557e-05 0.00% Gravity::set_mass_offset() 10 9.876e-06 1.134e-05 1.46e-05 0.00% Gravity::swapTimeLevels() 10 7.977e-06 1.115e-05 1.262e-05 0.00% Castro::FluxRegCrseInit 10 8.022e-06 9.666e-06 1.071e-05 0.00% Castro::create_source_corrector() 10 7.587e-06 9.39e-06 1.07e-05 0.00% Amr::initSubcycle() 1 8.978e-06 9.621e-06 1.05e-05 0.00% Castro::computeNewDt() 9 7.939e-06 8.71e-06 9.66e-06 0.00% Castro::retry_advance_ctu() 10 4.858e-06 5.549e-06 6.281e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.452e-06 4.2e-06 6.207e-06 0.00% Amr::InitializeInit() 1 1.928e-06 2.466e-06 5.079e-06 0.00% Castro::computeInitialDt() 2 3.174e-06 4.063e-06 4.814e-06 0.00% Castro::post_regrid() 1 2.132e-06 3.112e-06 4.431e-06 0.00% Castro::post_init() 1 2.534e-06 3.421e-06 4.32e-06 0.00% Amr::init() 1 1.967e-06 2.279e-06 2.647e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.27e-06 2.509e-06 0.00% Amr::initialInit() 1 1.345e-06 1.54e-06 1.972e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 9.549e-07 1.103e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.534 3.535 3.536 100.00% Amr::coarseTimeStep() 10 3.317 3.317 3.317 93.81% Amr::timeStep() 10 3.304 3.305 3.306 93.49% Castro::advance() 10 3.288 3.289 3.29 93.04% Castro::subcycle_advance_ctu() 10 3.202 3.211 3.218 91.01% Castro::do_advance_ctu() 10 3.202 3.211 3.218 91.01% Castro::construct_ctu_hydro_source() 10 2.321 2.35 2.383 67.41% Gravity::make_radial_gravity() 21 0.3372 0.3491 0.3608 10.20% Gravity::get_new_grav_vector() 11 0.2331 0.2346 0.2359 6.67% Castro::construct_old_gravity() 10 0.1928 0.201 0.2109 5.97% Gravity::get_old_grav_vector() 10 0.1916 0.2001 0.2102 5.95% Castro::construct_new_gravity() 10 0.2044 0.2055 0.206 5.83% Amr::init() 1 0.2006 0.2008 0.2008 5.68% FillPatchIterator::Initialize 41 0.16 0.1798 0.1931 5.46% Amr::initialInit() 1 0.184 0.1842 0.1844 5.21% Castro::initialize_do_advance() 10 0.1564 0.1716 0.1811 5.12% FillPatchSingleLevel 41 0.1167 0.1328 0.1549 4.38% Amr::InitializeInit() 1 0.06167 0.1009 0.1515 4.29% Amr::defBaseLevel() 1 0.06166 0.1009 0.1515 4.29% Castro::expand_state() 10 0.1068 0.1233 0.1336 3.78% Castro::initData() 1 0.04446 0.08302 0.1322 3.74% Castro::estTimeStep() 21 0.0247 0.08368 0.1303 3.68% Amr::FinalizeInit() 1 0.03268 0.08327 0.1224 3.46% Castro::clean_state() 62 0.1145 0.1171 0.1205 3.41% FabArray::ParallelCopy() 41 0.07826 0.09707 0.119 3.37% Castro::computeInitialDt() 2 0.002147 0.05277 0.09188 2.60% amrex::Copy() 193 0.06012 0.0735 0.08503 2.40% FabArray::setVal() 143 0.06417 0.07188 0.08452 2.39% Castro::initialize_advance() 10 0.06737 0.07409 0.08334 2.36% FabArray::ParallelCopy_finish() 41 0.03419 0.05422 0.08037 2.27% Castro::do_new_sources() 10 0.06056 0.06786 0.08021 2.27% Castro::computeTemp() 63 0.06728 0.0695 0.07138 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04885 0.04987 0.05088 1.44% Castro::reset_internal_energy(Fab) 1008 0.04857 0.04958 0.05059 1.43% Castro::do_old_sources() 10 0.04095 0.04591 0.0476 1.35% Castro::normalize_species() 62 0.04141 0.04232 0.04452 1.26% FabArray::ParallelCopy_nowait() 41 0.03859 0.04278 0.04425 1.25% StateDataPhysBCFunct::() 41 0.03281 0.03563 0.04001 1.13% StateData::FillBoundary(geom) 41 0.03271 0.03554 0.03992 1.13% Castro::construct_new_source() 50 0.0294 0.03307 0.03866 1.09% Castro::construct_new_gravity_source() 10 0.02343 0.02687 0.03229 0.91% Castro::post_init() 1 0.02962 0.03003 0.03034 0.86% Gravity::interpolate_monopole_grav() 21 0.02789 0.02826 0.02967 0.84% Amr::writePlotFile() 2 0.02706 0.02723 0.02746 0.78% VisMF::Write(FabArray) 2 0.01397 0.01465 0.01748 0.49% Castro::post_timestep() 10 0.01559 0.01592 0.01643 0.46% Castro::apply_source_to_state() 20 0.01268 0.01433 0.01518 0.43% FabArray::Saxpy() 20 0.01263 0.01428 0.01512 0.43% FabArray::setDomainBndry() 41 0.008935 0.01173 0.01303 0.37% Castro::check_for_nan() 20 0.01139 0.01211 0.0128 0.36% MultiFab::contains_nan() 20 0.01136 0.01209 0.01278 0.36% Castro::Castro() 1 0.0113 0.01167 0.01251 0.35% Castro::construct_old_source() 50 0.007775 0.01067 0.01138 0.32% Castro::construct_old_gravity_source() 10 0.007726 0.0106 0.0113 0.32% Castro::initMFs() 1 0.007076 0.007604 0.009044 0.26% Castro::computeNewDt() 9 0.008503 0.008518 0.00853 0.24% AmrLevel::AmrLevel(dm) 1 0.005795 0.006051 0.006721 0.19% StateData::define() 4 0.00577 0.006023 0.006695 0.19% Castro::enforce_min_density() 62 0.005646 0.00603 0.006253 0.18% Castro::swap_state_time_levels() 10 0.003385 0.004541 0.004805 0.14% Castro::finalize_advance() 10 0.002951 0.003715 0.004337 0.12% Castro::post_regrid() 1 0.001522 0.001664 0.002182 0.06% Castro::buildMetrics() 1 0.001774 0.001868 0.002082 0.06% Castro::finalize_do_advance() 10 0.0006569 0.001559 0.00194 0.05% Amr::InitAmr() 1 0.0002884 0.000315 0.0004538 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.219e-05 0.0001388 0.0001647 0.00% DistributionMapping::LeastUsedCPUs() 1 7.883e-06 0.0001337 0.0001574 0.00% Castro::enforce_consistent_e() 1 7.86e-05 8.863e-05 0.0001047 0.00% FabArrayBase::getCPC() 41 6.68e-05 8.336e-05 9.611e-05 0.00% Amr::writeSmallPlotFile() 1 2.651e-05 4.476e-05 5.811e-05 0.00% Castro::enforce_speed_limit() 62 2.628e-05 2.754e-05 3.179e-05 0.00% FabArrayBase::CPC::define() 2 2.109e-05 2.444e-05 2.784e-05 0.00% Gravity::set_mass_offset() 10 9.876e-06 1.134e-05 1.46e-05 0.00% Gravity::swapTimeLevels() 10 7.977e-06 1.115e-05 1.262e-05 0.00% Castro::FluxRegCrseInit 10 8.022e-06 9.666e-06 1.071e-05 0.00% Castro::create_source_corrector() 10 7.587e-06 9.39e-06 1.07e-05 0.00% Amr::initSubcycle() 1 8.978e-06 9.621e-06 1.05e-05 0.00% Castro::retry_advance_ctu() 10 4.858e-06 5.549e-06 6.281e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.27e-06 2.509e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 9.549e-07 1.103e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.03-29-gb41c44166e12) finalized