MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-8-gbacaa10a7636) initialized Starting run at 23:29:23 UTC on 2023-04-03. Successfully read inputs file ... Castro git describe: 23.04-1-g68c92753d AMReX git describe: 23.04-8-gbacaa10a7 Microphysics git describe: 23.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016298828 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360672821 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.349867046 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.329431186 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327259032 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351408005 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345797017 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.309645914 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311520482 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311182392 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311172489 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010501896 seconds Ending run at 23:29:26 UTC on 2023-04-03. Run time = 3.515327034 Run time without initialization = 3.325807798 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.514 ... 3.515 ... 3.515 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3209 2.3504 2.3765 67.60% Gravity::make_radial_gravity() 21 0.3168 0.3222 0.3337 9.49% Castro::estTimeStep() 21 0.02412 0.08047 0.1212 3.45% Castro::initData() 1 0.03905 0.07864 0.1174 3.34% FabArray::setVal() 143 0.0657 0.07315 0.08383 2.38% amrex::Copy() 193 0.06497 0.07336 0.08027 2.28% FabArray::ParallelCopy_finish() 41 0.04221 0.05702 0.0787 2.24% Castro::do_advance_ctu() 10 0.02188 0.04876 0.07741 2.20% Castro::reset_internal_energy(Fab) 1008 0.04751 0.04933 0.05199 1.48% Castro::normalize_species() 62 0.04115 0.04228 0.04338 1.23% FabArray::ParallelCopy_nowait() 41 0.03613 0.04099 0.04278 1.22% FillPatchIterator::Initialize 41 0.02913 0.03368 0.03812 1.08% StateData::FillBoundary(geom) 41 0.03231 0.03477 0.03681 1.05% Castro::construct_new_gravity_source() 10 0.02283 0.02587 0.03165 0.90% Gravity::interpolate_monopole_grav() 21 0.02823 0.0285 0.02904 0.83% Castro::initialize_do_advance() 10 0.0126 0.01783 0.02164 0.62% Castro::computeTemp() 63 0.01706 0.01896 0.02009 0.57% VisMF::Write(FabArray) 2 0.01363 0.01462 0.01731 0.49% FabArray::Saxpy() 20 0.01247 0.014 0.01455 0.41% Castro::initialize_advance() 10 0.008316 0.01114 0.01433 0.41% FabArray::setDomainBndry() 41 0.00882 0.01122 0.01271 0.36% MultiFab::contains_nan() 20 0.01132 0.01197 0.01259 0.36% Amr::writePlotFile() 2 0.006884 0.009842 0.01099 0.31% Castro::construct_old_gravity_source() 10 0.007553 0.01019 0.01076 0.31% Castro::initMFs() 1 0.006997 0.007484 0.008893 0.25% Amr::coarseTimeStep() 10 0.002451 0.006208 0.008098 0.23% Castro::construct_new_source() 50 0.00572 0.006293 0.007173 0.20% StateData::define() 4 0.005806 0.006134 0.006646 0.19% main() 1 0.005406 0.006144 0.00661 0.19% Castro::enforce_min_density() 62 0.005677 0.006034 0.006446 0.18% Castro::swap_state_time_levels() 10 0.003395 0.004536 0.004807 0.14% Gravity::get_new_grav_vector() 11 0.003036 0.003564 0.003995 0.11% Gravity::get_old_grav_vector() 10 0.001848 0.002334 0.002754 0.08% Castro::finalize_do_advance() 10 0.0006353 0.001728 0.002195 0.06% Castro::buildMetrics() 1 0.00163 0.001717 0.001924 0.05% Castro::expand_state() 10 0.0007532 0.001137 0.001273 0.04% Amr::InitAmr() 1 0.0002817 0.0003184 0.0004891 0.01% Amr::timeStep() 10 0.0001827 0.0002334 0.0003843 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002704 0.000292 0.0003368 0.01% DistributionMapping::LeastUsedCPUs() 1 8.622e-06 0.0001791 0.0002108 0.01% StateDataPhysBCFunct::() 41 8.654e-05 0.0001083 0.0001697 0.00% Castro::clean_state() 62 0.0001361 0.0001535 0.0001689 0.00% Castro::finalize_advance() 10 8.449e-05 0.0001053 0.000122 0.00% Castro::do_new_sources() 10 5.226e-05 6.766e-05 0.0001075 0.00% Castro::enforce_consistent_e() 1 8.19e-05 8.679e-05 9.609e-05 0.00% FabArray::ParallelCopy() 41 5.969e-05 7.358e-05 9.063e-05 0.00% Castro::Castro() 1 5.452e-05 6.495e-05 8.645e-05 0.00% Castro::construct_old_source() 50 4.982e-05 6.588e-05 7.852e-05 0.00% FillPatchSingleLevel 41 6.01e-05 6.415e-05 6.982e-05 0.00% Castro::do_old_sources() 10 4.938e-05 5.824e-05 6.967e-05 0.00% Amr::FinalizeInit() 1 3.71e-06 1.295e-05 6.904e-05 0.00% Amr::writeSmallPlotFile() 1 2.53e-05 4.705e-05 6.652e-05 0.00% FabArrayBase::getCPC() 41 4.13e-05 5.215e-05 6.228e-05 0.00% Castro::construct_new_gravity() 10 3.689e-05 4.284e-05 5.895e-05 0.00% Castro::advance() 10 4.095e-05 4.911e-05 5.707e-05 0.00% Castro::subcycle_advance_ctu() 10 3.434e-05 4.825e-05 5.596e-05 0.00% Castro::apply_source_to_state() 20 3.805e-05 4.509e-05 5.22e-05 0.00% Castro::construct_old_gravity() 10 3.603e-05 3.965e-05 4.417e-05 0.00% Amr::defBaseLevel() 1 2.005e-05 2.753e-05 3.81e-05 0.00% Castro::enforce_speed_limit() 62 2.197e-05 2.703e-05 3.2e-05 0.00% Castro::FluxRegCrseInit 10 9.754e-06 1.913e-05 3.105e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.323e-05 2.383e-05 2.876e-05 0.00% Castro::check_for_nan() 20 2.243e-05 2.41e-05 2.626e-05 0.00% FabArrayBase::CPC::define() 2 2.162e-05 2.392e-05 2.617e-05 0.00% Castro::post_timestep() 10 1.354e-05 2.04e-05 2.602e-05 0.00% Gravity::swapTimeLevels() 10 9.677e-06 1.169e-05 1.409e-05 0.00% Gravity::set_mass_offset() 10 9.162e-06 1.021e-05 1.151e-05 0.00% Castro::create_source_corrector() 10 7.324e-06 8.657e-06 1.071e-05 0.00% Amr::initSubcycle() 1 8.906e-06 9.695e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 4.953e-06 6.208e-06 9.493e-06 0.00% Castro::FluxRegFineAdd() 10 1.987e-06 3.881e-06 8.701e-06 0.00% Castro::computeNewDt() 9 7.434e-06 7.949e-06 8.317e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.723e-06 4.415e-06 6.436e-06 0.00% Castro::computeInitialDt() 2 3.619e-06 4.392e-06 5.589e-06 0.00% Amr::InitializeInit() 1 1.949e-06 2.707e-06 5.392e-06 0.00% Castro::post_init() 1 2.235e-06 3.421e-06 4.853e-06 0.00% DistributionMapping::Distribute() 1 8.29e-07 1.442e-06 4.304e-06 0.00% Castro::post_regrid() 1 1.643e-06 3.07e-06 4.182e-06 0.00% Amr::init() 1 1.566e-06 2.189e-06 2.714e-06 0.00% Amr::initialInit() 1 1.232e-06 1.49e-06 2.054e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.514 3.515 3.515 100.00% Amr::coarseTimeStep() 10 3.309 3.309 3.309 94.12% Amr::timeStep() 10 3.291 3.293 3.297 93.78% Castro::advance() 10 3.276 3.277 3.278 93.25% Castro::subcycle_advance_ctu() 10 3.189 3.197 3.203 91.12% Castro::do_advance_ctu() 10 3.189 3.197 3.203 91.12% Castro::construct_ctu_hydro_source() 10 2.321 2.35 2.376 67.60% Gravity::make_radial_gravity() 21 0.3329 0.3393 0.3482 9.90% Gravity::get_new_grav_vector() 11 0.2215 0.2239 0.2313 6.58% Castro::construct_old_gravity() 10 0.194 0.1998 0.2069 5.89% Gravity::get_old_grav_vector() 10 0.1932 0.1989 0.2063 5.87% Castro::construct_new_gravity() 10 0.193 0.1953 0.2029 5.77% Amr::init() 1 0.1889 0.189 0.1891 5.38% FillPatchIterator::Initialize 41 0.158 0.178 0.1857 5.28% Castro::initialize_do_advance() 10 0.1593 0.1701 0.1802 5.13% Amr::initialInit() 1 0.1721 0.1724 0.1727 4.91% FillPatchSingleLevel 41 0.1182 0.1331 0.1474 4.19% Amr::InitializeInit() 1 0.06048 0.1005 0.1403 3.99% Amr::defBaseLevel() 1 0.06048 0.1005 0.1403 3.99% Castro::expand_state() 10 0.1096 0.1225 0.1331 3.79% Castro::estTimeStep() 21 0.02412 0.08047 0.1212 3.45% Castro::initData() 1 0.04321 0.08259 0.1211 3.44% Castro::clean_state() 62 0.1111 0.1161 0.1195 3.40% FabArray::ParallelCopy() 41 0.08321 0.09816 0.115 3.27% Amr::FinalizeInit() 1 0.03211 0.07192 0.1117 3.18% Castro::initialize_advance() 10 0.06995 0.07594 0.08397 2.39% FabArray::setVal() 143 0.0657 0.07315 0.08383 2.38% Castro::computeInitialDt() 2 0.002214 0.04206 0.08208 2.33% amrex::Copy() 193 0.06497 0.07336 0.08027 2.28% Castro::do_new_sources() 10 0.06013 0.06642 0.07918 2.25% FabArray::ParallelCopy_finish() 41 0.04221 0.05702 0.0787 2.24% Castro::computeTemp() 63 0.06489 0.06857 0.07212 2.05% Castro::reset_internal_energy(MultiFab) 63 0.0478 0.04962 0.05233 1.49% Castro::reset_internal_energy(Fab) 1008 0.04751 0.04933 0.05199 1.48% Castro::do_old_sources() 10 0.0407 0.0454 0.04941 1.41% Castro::normalize_species() 62 0.04115 0.04228 0.04338 1.23% FabArray::ParallelCopy_nowait() 41 0.0362 0.04107 0.04285 1.22% Castro::construct_new_source() 50 0.02855 0.03216 0.03806 1.08% StateDataPhysBCFunct::() 41 0.0324 0.03488 0.0369 1.05% StateData::FillBoundary(geom) 41 0.03231 0.03477 0.03681 1.05% Castro::construct_new_gravity_source() 10 0.02283 0.02587 0.03165 0.90% Castro::post_init() 1 0.0291 0.02942 0.02972 0.85% Gravity::interpolate_monopole_grav() 21 0.02823 0.0285 0.02904 0.83% Amr::writePlotFile() 2 0.02696 0.02723 0.02752 0.78% Castro::post_timestep() 10 0.01495 0.01599 0.01845 0.52% VisMF::Write(FabArray) 2 0.01363 0.01462 0.01731 0.49% Castro::apply_source_to_state() 20 0.01251 0.01404 0.0146 0.42% FabArray::Saxpy() 20 0.01247 0.014 0.01455 0.41% FabArray::setDomainBndry() 41 0.00882 0.01122 0.01271 0.36% Castro::check_for_nan() 20 0.01134 0.01199 0.01261 0.36% MultiFab::contains_nan() 20 0.01132 0.01197 0.01259 0.36% Castro::Castro() 1 0.0111 0.01151 0.01249 0.36% Castro::construct_old_source() 50 0.007603 0.01026 0.01084 0.31% Castro::construct_old_gravity_source() 10 0.007553 0.01019 0.01076 0.31% Castro::initMFs() 1 0.006997 0.007484 0.008893 0.25% Castro::computeNewDt() 9 0.008402 0.008408 0.008413 0.24% AmrLevel::AmrLevel(dm) 1 0.005826 0.006157 0.006671 0.19% StateData::define() 4 0.005806 0.006134 0.006646 0.19% Castro::enforce_min_density() 62 0.005677 0.006034 0.006446 0.18% Castro::finalize_advance() 10 0.002948 0.003957 0.00555 0.16% Castro::swap_state_time_levels() 10 0.003395 0.004536 0.004807 0.14% Castro::finalize_do_advance() 10 0.0006353 0.001728 0.002195 0.06% Castro::buildMetrics() 1 0.001758 0.001843 0.002074 0.06% Castro::post_regrid() 1 0.001616 0.001671 0.001721 0.05% Amr::InitAmr() 1 0.0002913 0.0003281 0.0004995 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.355e-05 0.000185 0.0002177 0.01% DistributionMapping::LeastUsedCPUs() 1 8.622e-06 0.0001791 0.0002108 0.01% Castro::enforce_consistent_e() 1 8.19e-05 8.679e-05 9.609e-05 0.00% FabArrayBase::getCPC() 41 6.59e-05 7.607e-05 8.63e-05 0.00% Amr::writeSmallPlotFile() 1 2.53e-05 4.705e-05 6.652e-05 0.00% Castro::enforce_speed_limit() 62 2.197e-05 2.703e-05 3.2e-05 0.00% Castro::FluxRegCrseInit 10 9.754e-06 1.913e-05 3.105e-05 0.00% FabArrayBase::CPC::define() 2 2.162e-05 2.392e-05 2.617e-05 0.00% Gravity::swapTimeLevels() 10 9.677e-06 1.169e-05 1.409e-05 0.00% Gravity::set_mass_offset() 10 9.162e-06 1.021e-05 1.151e-05 0.00% Castro::create_source_corrector() 10 7.324e-06 8.657e-06 1.071e-05 0.00% Amr::initSubcycle() 1 8.906e-06 9.695e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 4.953e-06 6.208e-06 9.493e-06 0.00% Castro::FluxRegFineAdd() 10 1.987e-06 3.881e-06 8.701e-06 0.00% DistributionMapping::Distribute() 1 8.29e-07 1.442e-06 4.304e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-8-gbacaa10a7636) finalized