MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-8-gbacaa10a7636) initialized Starting run at 05:36:36 UTC on 2023-04-03. Successfully read inputs file ... Castro git describe: 23.04 AMReX git describe: 23.04-8-gbacaa10a7 Microphysics git describe: 23.04 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.02039243 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.411118665 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.389651682 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.349058344 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.337259596 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361889222 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327354678 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311734173 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312528492 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314101755 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314705162 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010489158 seconds Ending run at 05:36:39 UTC on 2023-04-03. Run time = 3.647566938 Run time without initialization = 3.447455682 Average number of zones advanced per microsecond: 0.760 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.646 ... 3.647 ... 3.648 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3214 2.3708 2.4240 66.45% Gravity::make_radial_gravity() 21 0.3568 0.375 0.3871 10.61% Castro::do_advance_ctu() 10 0.04566 0.1055 0.1554 4.26% Castro::estTimeStep() 21 0.02969 0.06219 0.1213 3.32% Castro::initData() 1 0.03855 0.08693 0.1124 3.08% amrex::Copy() 193 0.06605 0.07187 0.08206 2.25% FabArray::setVal() 143 0.06275 0.07074 0.07887 2.16% FabArray::ParallelCopy_finish() 41 0.041 0.05638 0.06672 1.83% Castro::reset_internal_energy(Fab) 1008 0.04775 0.05146 0.05479 1.50% FabArray::ParallelCopy_nowait() 41 0.04031 0.04284 0.04529 1.24% Castro::normalize_species() 62 0.04108 0.04337 0.04509 1.24% StateData::FillBoundary(geom) 41 0.03386 0.0371 0.04396 1.21% FillPatchIterator::Initialize 41 0.03037 0.0358 0.03844 1.05% Castro::construct_new_gravity_source() 10 0.02345 0.02697 0.03238 0.89% Gravity::interpolate_monopole_grav() 21 0.02817 0.02902 0.02997 0.82% Castro::computeTemp() 63 0.01791 0.02037 0.02221 0.61% Castro::initialize_do_advance() 10 0.01337 0.01793 0.02022 0.55% VisMF::Write(FabArray) 2 0.01322 0.01451 0.01922 0.53% FabArray::Saxpy() 20 0.01339 0.01446 0.01533 0.42% Castro::initialize_advance() 10 0.009383 0.01196 0.0147 0.40% Amr::writePlotFile() 2 0.009291 0.01229 0.01443 0.40% MultiFab::contains_nan() 20 0.01169 0.01248 0.01351 0.37% FabArray::setDomainBndry() 41 0.00898 0.01186 0.01298 0.36% Castro::construct_old_gravity_source() 10 0.008934 0.0105 0.01125 0.31% Castro::initMFs() 1 0.00698 0.008009 0.01105 0.30% StateData::define() 4 0.005753 0.00647 0.008543 0.23% main() 1 0.005133 0.006234 0.006795 0.19% Castro::swap_state_time_levels() 10 0.003482 0.005121 0.006756 0.19% Castro::enforce_min_density() 62 0.005909 0.006252 0.006601 0.18% Castro::construct_new_source() 50 0.006009 0.00622 0.006404 0.18% Amr::coarseTimeStep() 10 0.001724 0.003294 0.004539 0.12% Gravity::get_new_grav_vector() 11 0.003252 0.003797 0.00452 0.12% Gravity::get_old_grav_vector() 10 0.001769 0.002374 0.002652 0.07% Castro::buildMetrics() 1 0.001614 0.001847 0.002457 0.07% Castro::finalize_do_advance() 10 0.0006253 0.001462 0.001804 0.05% Castro::expand_state() 10 0.0006298 0.0007914 0.001095 0.03% Amr::InitAmr() 1 0.0002747 0.0003999 0.0006641 0.02% DistributionMapping::LeastUsedCPUs() 1 8.115e-06 0.000347 0.0004943 0.01% Amr::timeStep() 10 0.0001783 0.0002391 0.0004027 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000277 0.0003093 0.0003739 0.01% Castro::clean_state() 62 0.0001703 0.0001822 0.0001962 0.01% Castro::enforce_consistent_e() 1 7.743e-05 0.0001052 0.0001708 0.00% Castro::finalize_advance() 10 9.479e-05 0.000109 0.0001233 0.00% StateDataPhysBCFunct::() 41 8.672e-05 9.583e-05 0.0001077 0.00% FabArray::ParallelCopy() 41 6.03e-05 7.396e-05 8.694e-05 0.00% Castro::Castro() 1 6.085e-05 6.851e-05 8.594e-05 0.00% FillPatchSingleLevel 41 5.837e-05 6.857e-05 8.227e-05 0.00% Castro::do_new_sources() 10 5.301e-05 6.478e-05 8.109e-05 0.00% FabArrayBase::getCPC() 41 3.806e-05 6.361e-05 7.482e-05 0.00% Castro::do_old_sources() 10 5.249e-05 6.124e-05 7.47e-05 0.00% Castro::construct_old_source() 50 5.674e-05 6.702e-05 7.127e-05 0.00% Amr::FinalizeInit() 1 4.273e-06 1.399e-05 7.12e-05 0.00% Amr::writeSmallPlotFile() 1 2.581e-05 5.002e-05 5.947e-05 0.00% Castro::apply_source_to_state() 20 4.046e-05 4.807e-05 5.418e-05 0.00% Castro::construct_new_gravity() 10 3.5e-05 4.296e-05 5.36e-05 0.00% Castro::subcycle_advance_ctu() 10 3.887e-05 4.573e-05 5.281e-05 0.00% Castro::construct_old_gravity() 10 3.449e-05 4.082e-05 5.032e-05 0.00% Castro::advance() 10 3.907e-05 4.313e-05 4.71e-05 0.00% FabArrayBase::CPC::define() 2 2.21e-05 2.789e-05 3.779e-05 0.00% Amr::initSubcycle() 1 8.762e-06 1.362e-05 3.228e-05 0.00% Castro::enforce_speed_limit() 62 2.622e-05 2.819e-05 3.06e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.477e-05 1.94e-05 3.018e-05 0.00% Castro::check_for_nan() 20 2.292e-05 2.638e-05 2.995e-05 0.00% Amr::defBaseLevel() 1 1.736e-05 2.285e-05 2.96e-05 0.00% Gravity::swapTimeLevels() 10 1.264e-05 1.466e-05 1.866e-05 0.00% Castro::post_timestep() 10 1.455e-05 1.54e-05 1.623e-05 0.00% Castro::FluxRegCrseInit 10 7.469e-06 1.057e-05 1.533e-05 0.00% Gravity::set_mass_offset() 10 9.671e-06 1.162e-05 1.347e-05 0.00% Castro::create_source_corrector() 10 8.264e-06 9.819e-06 1.23e-05 0.00% Castro::retry_advance_ctu() 10 5.611e-06 6.973e-06 1.192e-05 0.00% Castro::computeNewDt() 9 6.809e-06 8.064e-06 8.922e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.348e-06 4.469e-06 5.775e-06 0.00% Castro::computeInitialDt() 2 3.492e-06 4.47e-06 5.503e-06 0.00% Castro::post_init() 1 3.175e-06 3.725e-06 5.101e-06 0.00% Castro::post_regrid() 1 2.323e-06 3.36e-06 5.059e-06 0.00% Amr::InitializeInit() 1 2.085e-06 3.012e-06 4.709e-06 0.00% Castro::FluxRegFineAdd() 10 2.175e-06 2.416e-06 2.967e-06 0.00% Amr::init() 1 1.995e-06 2.441e-06 2.792e-06 0.00% Amr::initialInit() 1 1.37e-06 1.836e-06 2.708e-06 0.00% DistributionMapping::Distribute() 1 8.71e-07 1.202e-06 1.785e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.646 3.647 3.648 100.00% Amr::coarseTimeStep() 10 3.43 3.43 3.43 94.04% Amr::timeStep() 10 3.415 3.416 3.418 93.70% Castro::advance() 10 3.399 3.4 3.4 93.22% Castro::subcycle_advance_ctu() 10 3.312 3.321 3.328 91.24% Castro::do_advance_ctu() 10 3.312 3.321 3.328 91.24% Castro::construct_ctu_hydro_source() 10 2.321 2.371 2.424 66.45% Gravity::make_radial_gravity() 21 0.3721 0.3913 0.404 11.07% Gravity::get_new_grav_vector() 11 0.2452 0.2478 0.2505 6.87% Castro::construct_old_gravity() 10 0.2166 0.2305 0.2402 6.58% Gravity::get_old_grav_vector() 10 0.2159 0.2298 0.2396 6.57% Castro::construct_new_gravity() 10 0.2068 0.2088 0.2101 5.76% Amr::init() 1 0.1992 0.1996 0.1997 5.47% FillPatchIterator::Initialize 41 0.1722 0.1843 0.1954 5.36% Amr::initialInit() 1 0.179 0.1807 0.1815 4.98% Castro::initialize_do_advance() 10 0.1598 0.1734 0.1815 4.98% FillPatchSingleLevel 41 0.127 0.1367 0.1449 3.97% Amr::InitializeInit() 1 0.05993 0.1105 0.1369 3.75% Amr::defBaseLevel() 1 0.05993 0.1105 0.1369 3.75% Castro::expand_state() 10 0.1144 0.1243 0.133 3.65% Castro::clean_state() 62 0.1134 0.1208 0.1273 3.49% Castro::estTimeStep() 21 0.02969 0.06219 0.1213 3.32% Amr::FinalizeInit() 1 0.04456 0.07025 0.1212 3.32% Castro::initData() 1 0.04242 0.09138 0.1164 3.19% FabArray::ParallelCopy() 41 0.08647 0.09939 0.1095 3.00% Castro::initialize_advance() 10 0.06812 0.07545 0.0833 2.28% amrex::Copy() 193 0.06605 0.07187 0.08206 2.25% Castro::computeInitialDt() 2 0.00325 0.02982 0.08051 2.21% FabArray::setVal() 143 0.06275 0.07074 0.07887 2.16% Castro::do_new_sources() 10 0.06011 0.06769 0.07801 2.14% Castro::computeTemp() 63 0.06716 0.07214 0.07711 2.11% FabArray::ParallelCopy_finish() 41 0.041 0.05638 0.06672 1.83% Castro::reset_internal_energy(MultiFab) 63 0.04803 0.05177 0.05517 1.51% Castro::reset_internal_energy(Fab) 1008 0.04775 0.05146 0.05479 1.50% Castro::do_old_sources() 10 0.04564 0.04671 0.04876 1.34% FabArray::ParallelCopy_nowait() 41 0.04042 0.04294 0.04539 1.24% Castro::normalize_species() 62 0.04108 0.04337 0.04509 1.24% StateDataPhysBCFunct::() 41 0.03397 0.0372 0.04406 1.21% StateData::FillBoundary(geom) 41 0.03386 0.0371 0.04396 1.21% Castro::post_init() 1 0.0387 0.04016 0.0409 1.12% Castro::construct_new_source() 50 0.02956 0.03319 0.03877 1.06% Castro::construct_new_gravity_source() 10 0.02345 0.02697 0.03238 0.89% Amr::writePlotFile() 2 0.02849 0.02937 0.0311 0.85% Gravity::interpolate_monopole_grav() 21 0.02817 0.02902 0.02997 0.82% VisMF::Write(FabArray) 2 0.01322 0.01451 0.01922 0.53% Castro::post_timestep() 10 0.01546 0.01626 0.01742 0.48% Castro::apply_source_to_state() 20 0.01345 0.01451 0.01539 0.42% Castro::Castro() 1 0.01112 0.01223 0.01534 0.42% FabArray::Saxpy() 20 0.01339 0.01446 0.01533 0.42% Castro::check_for_nan() 20 0.01172 0.0125 0.01354 0.37% MultiFab::contains_nan() 20 0.01169 0.01248 0.01351 0.37% FabArray::setDomainBndry() 41 0.00898 0.01186 0.01298 0.36% Castro::construct_old_source() 50 0.008999 0.01057 0.01132 0.31% Castro::construct_old_gravity_source() 10 0.008934 0.0105 0.01125 0.31% Castro::initMFs() 1 0.00698 0.008009 0.01105 0.30% Castro::computeNewDt() 9 0.009135 0.009142 0.009148 0.25% AmrLevel::AmrLevel(dm) 1 0.005768 0.00649 0.008569 0.23% StateData::define() 4 0.005753 0.00647 0.008543 0.23% Castro::swap_state_time_levels() 10 0.003482 0.005121 0.006756 0.19% Castro::enforce_min_density() 62 0.005909 0.006252 0.006601 0.18% Castro::finalize_advance() 10 0.002897 0.003453 0.003976 0.11% Castro::post_regrid() 1 0.001546 0.001978 0.002969 0.08% Castro::buildMetrics() 1 0.001729 0.00199 0.002663 0.07% Castro::finalize_do_advance() 10 0.0006253 0.001462 0.001804 0.05% Amr::InitAmr() 1 0.0002842 0.0004136 0.0006964 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.567e-05 0.0003527 0.000501 0.01% DistributionMapping::LeastUsedCPUs() 1 8.115e-06 0.000347 0.0004943 0.01% Castro::enforce_consistent_e() 1 7.743e-05 0.0001052 0.0001708 0.00% FabArrayBase::getCPC() 41 6.364e-05 9.15e-05 0.0001095 0.00% Amr::writeSmallPlotFile() 1 2.581e-05 5.002e-05 5.947e-05 0.00% FabArrayBase::CPC::define() 2 2.21e-05 2.789e-05 3.779e-05 0.00% Amr::initSubcycle() 1 8.762e-06 1.362e-05 3.228e-05 0.00% Castro::enforce_speed_limit() 62 2.622e-05 2.819e-05 3.06e-05 0.00% Gravity::swapTimeLevels() 10 1.264e-05 1.466e-05 1.866e-05 0.00% Castro::FluxRegCrseInit 10 7.469e-06 1.057e-05 1.533e-05 0.00% Gravity::set_mass_offset() 10 9.671e-06 1.162e-05 1.347e-05 0.00% Castro::create_source_corrector() 10 8.264e-06 9.819e-06 1.23e-05 0.00% Castro::retry_advance_ctu() 10 5.611e-06 6.973e-06 1.192e-05 0.00% Castro::FluxRegFineAdd() 10 2.175e-06 2.416e-06 2.967e-06 0.00% DistributionMapping::Distribute() 1 8.71e-07 1.202e-06 1.785e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-8-gbacaa10a7636) finalized