MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-9-g1e73fa8ec7c3) initialized Starting run at 05:37:41 UTC on 2023-04-05. Successfully read inputs file ... Castro git describe: 23.04-2-gabeccccb9 AMReX git describe: 23.04-9-g1e73fa8ec Microphysics git describe: 23.04-3-gdc41ef4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016116691 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357003616 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353817352 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.330240191 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33233164 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.355961803 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.342713448 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313806472 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314779588 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315334216 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314662424 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010287064 seconds Ending run at 05:37:44 UTC on 2023-04-05. Run time = 3.548350361 Run time without initialization = 3.348695534 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.547 ... 3.548 ... 3.548 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3123 2.3580 2.4102 67.92% Gravity::make_radial_gravity() 21 0.3179 0.3327 0.3515 9.91% Castro::estTimeStep() 21 0.02122 0.08425 0.1321 3.72% Castro::initData() 1 0.03895 0.07953 0.1285 3.62% Castro::do_advance_ctu() 10 0.009833 0.06752 0.1175 3.31% FabArray::setVal() 143 0.06373 0.0708 0.08427 2.37% FabArray::ParallelCopy_finish() 41 0.03806 0.05405 0.08287 2.34% amrex::Copy() 193 0.0584 0.07071 0.07787 2.19% Castro::reset_internal_energy(Fab) 1008 0.04801 0.05042 0.05468 1.54% Castro::normalize_species() 62 0.04146 0.04254 0.04377 1.23% FabArray::ParallelCopy_nowait() 41 0.03689 0.04165 0.04376 1.23% StateData::FillBoundary(geom) 41 0.03146 0.03508 0.04022 1.13% FillPatchIterator::Initialize 41 0.02912 0.03365 0.03756 1.06% Castro::construct_new_gravity_source() 10 0.02308 0.02678 0.03215 0.91% Gravity::interpolate_monopole_grav() 21 0.02827 0.02898 0.03048 0.86% Castro::computeTemp() 63 0.01883 0.02008 0.02208 0.62% Castro::initialize_do_advance() 10 0.01262 0.01746 0.02054 0.58% VisMF::Write(FabArray) 2 0.01358 0.0143 0.01695 0.48% FabArray::Saxpy() 20 0.01247 0.01414 0.01476 0.42% Castro::initialize_advance() 10 0.004122 0.01011 0.01364 0.38% MultiFab::contains_nan() 20 0.01113 0.01227 0.01357 0.38% FabArray::setDomainBndry() 41 0.008543 0.01104 0.01223 0.34% Castro::construct_old_gravity_source() 10 0.007499 0.01022 0.01079 0.30% Amr::writePlotFile() 2 0.006892 0.009843 0.01056 0.30% Castro::initMFs() 1 0.007154 0.007649 0.008584 0.24% main() 1 0.005818 0.006603 0.006992 0.20% StateData::define() 4 0.005777 0.006142 0.006677 0.19% Castro::construct_new_source() 50 0.005606 0.006157 0.006536 0.18% Castro::enforce_min_density() 62 0.005884 0.006113 0.006309 0.18% Castro::swap_state_time_levels() 10 0.003385 0.00449 0.004744 0.13% Gravity::get_new_grav_vector() 11 0.003045 0.003655 0.004067 0.11% Amr::coarseTimeStep() 10 0.001327 0.002169 0.002881 0.08% Gravity::get_old_grav_vector() 10 0.00159 0.002279 0.002613 0.07% Castro::finalize_do_advance() 10 0.0006508 0.001594 0.001945 0.05% Castro::buildMetrics() 1 0.001631 0.001737 0.001907 0.05% Castro::expand_state() 10 0.0006327 0.0009204 0.001152 0.03% Amr::timeStep() 10 0.0001597 0.0002452 0.0004871 0.01% Amr::InitAmr() 1 0.0002759 0.000316 0.0004871 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0002969 0.000374 0.01% DistributionMapping::LeastUsedCPUs() 1 9.798e-06 0.0001989 0.0002369 0.01% Castro::clean_state() 62 0.000137 0.0001477 0.0001557 0.00% Castro::finalize_advance() 10 8.24e-05 0.000104 0.0001247 0.00% StateDataPhysBCFunct::() 41 8.42e-05 9.214e-05 9.631e-05 0.00% Castro::enforce_consistent_e() 1 7.825e-05 8.44e-05 9.577e-05 0.00% FabArray::ParallelCopy() 41 6.229e-05 7.216e-05 8.489e-05 0.00% Castro::construct_old_source() 50 4.294e-05 6.709e-05 7.67e-05 0.00% Castro::Castro() 1 5.997e-05 6.558e-05 7.572e-05 0.00% FabArrayBase::getCPC() 41 4.124e-05 5.666e-05 7.53e-05 0.00% Castro::do_old_sources() 10 4.253e-05 5.919e-05 7.135e-05 0.00% Amr::FinalizeInit() 1 3.455e-06 1.478e-05 6.973e-05 0.00% FillPatchSingleLevel 41 6.127e-05 6.41e-05 6.829e-05 0.00% Castro::construct_new_gravity() 10 3.592e-05 4.494e-05 6.641e-05 0.00% Castro::subcycle_advance_ctu() 10 3.853e-05 4.798e-05 6.627e-05 0.00% Castro::do_new_sources() 10 5.308e-05 6.144e-05 6.523e-05 0.00% Amr::writeSmallPlotFile() 1 2.674e-05 4.749e-05 5.691e-05 0.00% Castro::apply_source_to_state() 20 4.18e-05 4.674e-05 5.302e-05 0.00% Castro::advance() 10 3.869e-05 4.335e-05 4.808e-05 0.00% Castro::construct_old_gravity() 10 3.502e-05 4.016e-05 4.485e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.827e-05 2.491e-05 3.267e-05 0.00% Castro::check_for_nan() 20 2.121e-05 2.478e-05 3.217e-05 0.00% Castro::enforce_speed_limit() 62 2.638e-05 2.754e-05 3.098e-05 0.00% Amr::defBaseLevel() 1 1.812e-05 2.284e-05 3.028e-05 0.00% FabArrayBase::CPC::define() 2 2.111e-05 2.37e-05 2.805e-05 0.00% Castro::post_timestep() 10 1.292e-05 1.955e-05 2.707e-05 0.00% Castro::computeNewDt() 9 6.874e-06 1.226e-05 1.999e-05 0.00% Castro::post_init() 1 3.05e-06 6.37e-06 1.968e-05 0.00% Gravity::swapTimeLevels() 10 8.742e-06 1.145e-05 1.494e-05 0.00% Gravity::set_mass_offset() 10 9.732e-06 1.111e-05 1.28e-05 0.00% Castro::create_source_corrector() 10 7.127e-06 9.265e-06 1.094e-05 0.00% Amr::initSubcycle() 1 8.958e-06 9.858e-06 1.091e-05 0.00% Castro::FluxRegCrseInit 10 7.224e-06 9.045e-06 1.006e-05 0.00% Castro::retry_advance_ctu() 10 4.393e-06 5.545e-06 7.319e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.545e-06 4.621e-06 6.425e-06 0.00% Amr::InitializeInit() 1 1.927e-06 3.005e-06 5.649e-06 0.00% Castro::computeInitialDt() 2 3.553e-06 4.144e-06 5.558e-06 0.00% Castro::FluxRegFineAdd() 10 1.912e-06 2.423e-06 3.505e-06 0.00% Castro::post_regrid() 1 1.912e-06 2.604e-06 3.216e-06 0.00% Amr::init() 1 1.621e-06 2.234e-06 2.967e-06 0.00% Amr::initialInit() 1 1.143e-06 1.843e-06 2.958e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.029e-06 1.201e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.547 3.548 3.548 100.00% Amr::coarseTimeStep() 10 3.332 3.332 3.332 93.89% Amr::timeStep() 10 3.319 3.32 3.321 93.58% Castro::advance() 10 3.303 3.303 3.304 93.12% Castro::subcycle_advance_ctu() 10 3.217 3.227 3.236 91.18% Castro::do_advance_ctu() 10 3.217 3.227 3.236 91.18% Castro::construct_ctu_hydro_source() 10 2.312 2.358 2.41 67.92% Gravity::make_radial_gravity() 21 0.3328 0.3489 0.3651 10.29% Gravity::get_new_grav_vector() 11 0.2247 0.2318 0.2338 6.59% Castro::construct_old_gravity() 10 0.1888 0.2023 0.2162 6.09% Gravity::get_old_grav_vector() 10 0.1877 0.2015 0.2157 6.08% Castro::construct_new_gravity() 10 0.1976 0.2042 0.2058 5.80% Amr::init() 1 0.199 0.1992 0.1992 5.61% FillPatchIterator::Initialize 41 0.1573 0.1758 0.1892 5.33% Amr::initialInit() 1 0.1826 0.1827 0.1829 5.15% Castro::initialize_do_advance() 10 0.1563 0.1683 0.1754 4.94% FillPatchSingleLevel 41 0.117 0.1311 0.1515 4.27% Amr::InitializeInit() 1 0.06158 0.1014 0.1514 4.27% Amr::defBaseLevel() 1 0.06157 0.1014 0.1514 4.27% Castro::estTimeStep() 21 0.02122 0.08425 0.1321 3.72% Castro::initData() 1 0.04245 0.08343 0.1321 3.72% Castro::expand_state() 10 0.1067 0.1203 0.1288 3.63% Castro::clean_state() 62 0.1139 0.1187 0.1256 3.54% Amr::FinalizeInit() 1 0.03127 0.08128 0.1211 3.41% FabArray::ParallelCopy() 41 0.08199 0.09586 0.1199 3.38% Castro::computeInitialDt() 2 0.00212 0.05207 0.09195 2.59% FabArray::setVal() 143 0.06373 0.0708 0.08427 2.37% Castro::initialize_advance() 10 0.06317 0.07306 0.08302 2.34% FabArray::ParallelCopy_finish() 41 0.03806 0.05405 0.08287 2.34% Castro::do_new_sources() 10 0.05995 0.06785 0.08023 2.26% amrex::Copy() 193 0.0584 0.07071 0.07787 2.19% Castro::computeTemp() 63 0.06711 0.07079 0.07713 2.17% Castro::reset_internal_energy(MultiFab) 63 0.04828 0.05071 0.05505 1.55% Castro::reset_internal_energy(Fab) 1008 0.04801 0.05042 0.05468 1.54% Castro::do_old_sources() 10 0.04001 0.0452 0.04677 1.32% FabArray::ParallelCopy_nowait() 41 0.03698 0.04173 0.04384 1.24% Castro::normalize_species() 62 0.04146 0.04254 0.04377 1.23% StateDataPhysBCFunct::() 41 0.03155 0.03517 0.04032 1.14% StateData::FillBoundary(geom) 41 0.03146 0.03508 0.04022 1.13% Castro::construct_new_source() 50 0.02925 0.03293 0.03844 1.08% Castro::construct_new_gravity_source() 10 0.02308 0.02678 0.03215 0.91% Gravity::interpolate_monopole_grav() 21 0.02827 0.02898 0.03048 0.86% Castro::post_init() 1 0.02769 0.02859 0.02886 0.81% Amr::writePlotFile() 2 0.02662 0.02683 0.02697 0.76% VisMF::Write(FabArray) 2 0.01358 0.0143 0.01695 0.48% Castro::post_timestep() 10 0.01581 0.01606 0.01621 0.46% Castro::apply_source_to_state() 20 0.01251 0.01419 0.01481 0.42% FabArray::Saxpy() 20 0.01247 0.01414 0.01476 0.42% Castro::check_for_nan() 20 0.01115 0.01229 0.01359 0.38% MultiFab::contains_nan() 20 0.01113 0.01227 0.01357 0.38% Castro::Castro() 1 0.01106 0.01161 0.01245 0.35% FabArray::setDomainBndry() 41 0.008543 0.01104 0.01223 0.34% Castro::construct_old_source() 50 0.007542 0.01029 0.01086 0.31% Castro::construct_old_gravity_source() 10 0.007499 0.01022 0.01079 0.30% Castro::initMFs() 1 0.007154 0.007649 0.008584 0.24% Castro::computeNewDt() 9 0.008439 0.008446 0.008456 0.24% AmrLevel::AmrLevel(dm) 1 0.005807 0.006166 0.006703 0.19% StateData::define() 4 0.005777 0.006142 0.006677 0.19% Castro::enforce_min_density() 62 0.005884 0.006113 0.006309 0.18% Castro::swap_state_time_levels() 10 0.003385 0.00449 0.004744 0.13% Castro::finalize_advance() 10 0.002882 0.003674 0.004391 0.12% Castro::post_regrid() 1 0.001578 0.001761 0.002655 0.07% Castro::buildMetrics() 1 0.00175 0.001874 0.002076 0.06% Castro::finalize_do_advance() 10 0.0006508 0.001594 0.001945 0.05% Amr::InitAmr() 1 0.0002857 0.0003258 0.0004961 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.512e-05 0.0002045 0.0002445 0.01% DistributionMapping::LeastUsedCPUs() 1 9.798e-06 0.0001989 0.0002369 0.01% FabArrayBase::getCPC() 41 6.487e-05 8.036e-05 9.641e-05 0.00% Castro::enforce_consistent_e() 1 7.825e-05 8.44e-05 9.577e-05 0.00% Amr::writeSmallPlotFile() 1 2.674e-05 4.749e-05 5.691e-05 0.00% Castro::enforce_speed_limit() 62 2.638e-05 2.754e-05 3.098e-05 0.00% FabArrayBase::CPC::define() 2 2.111e-05 2.37e-05 2.805e-05 0.00% Gravity::swapTimeLevels() 10 8.742e-06 1.145e-05 1.494e-05 0.00% Gravity::set_mass_offset() 10 9.732e-06 1.111e-05 1.28e-05 0.00% Castro::create_source_corrector() 10 7.127e-06 9.265e-06 1.094e-05 0.00% Amr::initSubcycle() 1 8.958e-06 9.858e-06 1.091e-05 0.00% Castro::FluxRegCrseInit 10 7.224e-06 9.045e-06 1.006e-05 0.00% Castro::retry_advance_ctu() 10 4.393e-06 5.545e-06 7.319e-06 0.00% Castro::FluxRegFineAdd() 10 1.912e-06 2.423e-06 3.505e-06 0.00% DistributionMapping::Distribute() 1 9.03e-07 1.029e-06 1.201e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-9-g1e73fa8ec7c3) finalized