MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-9-g1e73fa8ec7c3) initialized Starting run at 05:21:33 UTC on 2023-04-06. Successfully read inputs file ... Castro git describe: 23.04-2-gabeccccb9 AMReX git describe: 23.04-9-g1e73fa8ec Microphysics git describe: 23.04-3-gdc41ef4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016080408 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.386595064 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.358863738 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.331063335 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.332254705 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354528257 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328600134 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311620813 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312665114 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312815759 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312734368 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010446901 seconds Ending run at 05:21:36 UTC on 2023-04-06. Run time = 3.568514389 Run time without initialization = 3.359849896 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.567 ... 3.568 ... 3.569 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3067 2.3529 2.4073 67.46% Gravity::make_radial_gravity() 21 0.3242 0.3314 0.3449 9.66% Castro::do_advance_ctu() 10 0.04754 0.1032 0.1517 4.25% Castro::initData() 1 0.04383 0.0923 0.1375 3.85% Castro::estTimeStep() 21 0.02094 0.0728 0.1287 3.61% FabArray::ParallelCopy_finish() 41 0.03456 0.04724 0.0824 2.31% amrex::Copy() 193 0.0609 0.07152 0.0783 2.19% FabArray::setVal() 143 0.05677 0.0674 0.07654 2.14% Castro::reset_internal_energy(Fab) 1008 0.04855 0.04994 0.05272 1.48% Castro::normalize_species() 62 0.04121 0.04221 0.04566 1.28% FabArray::ParallelCopy_nowait() 41 0.03713 0.04115 0.04277 1.20% StateData::FillBoundary(geom) 41 0.03309 0.03487 0.03745 1.05% FillPatchIterator::Initialize 41 0.02886 0.03324 0.03543 0.99% Castro::construct_new_gravity_source() 10 0.02327 0.02582 0.02946 0.83% Gravity::interpolate_monopole_grav() 21 0.02801 0.0285 0.02914 0.82% Castro::computeTemp() 63 0.01888 0.01992 0.02127 0.60% Castro::initialize_do_advance() 10 0.0122 0.01699 0.01908 0.53% VisMF::Write(FabArray) 2 0.01312 0.01416 0.01726 0.48% FabArray::Saxpy() 20 0.01263 0.01408 0.01478 0.41% Castro::initialize_advance() 10 0.004111 0.01 0.01312 0.37% MultiFab::contains_nan() 20 0.01132 0.01203 0.01298 0.36% FabArray::setDomainBndry() 41 0.008805 0.01114 0.01238 0.35% Amr::writePlotFile() 2 0.006803 0.01007 0.01178 0.33% Castro::construct_old_gravity_source() 10 0.007734 0.0102 0.01075 0.30% Castro::initMFs() 1 0.006845 0.00889 0.01028 0.29% StateData::define() 4 0.005855 0.007399 0.008452 0.24% main() 1 0.005092 0.006276 0.006958 0.19% Castro::construct_new_source() 50 0.005819 0.006323 0.00661 0.19% Castro::enforce_min_density() 62 0.005737 0.006109 0.006345 0.18% Gravity::get_new_grav_vector() 11 0.003026 0.003772 0.005432 0.15% Castro::swap_state_time_levels() 10 0.003311 0.004435 0.005319 0.15% Amr::coarseTimeStep() 10 0.001749 0.002228 0.003008 0.08% Gravity::get_old_grav_vector() 10 0.001843 0.002464 0.002859 0.08% Castro::buildMetrics() 1 0.001614 0.002084 0.002392 0.07% Castro::finalize_do_advance() 10 0.0006446 0.001518 0.001836 0.05% Castro::expand_state() 10 0.0006186 0.0006963 0.0007814 0.02% Amr::timeStep() 10 0.000178 0.0002535 0.0005319 0.01% Amr::InitAmr() 1 0.0003267 0.0004374 0.0005187 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002772 0.0002909 0.0003157 0.01% DistributionMapping::LeastUsedCPUs() 1 8.576e-06 0.0001061 0.0002316 0.01% Castro::clean_state() 62 0.000145 0.0001668 0.000179 0.01% Castro::finalize_advance() 10 9.967e-05 0.0001096 0.0001416 0.00% Castro::enforce_consistent_e() 1 8.25e-05 9.343e-05 0.00011 0.00% StateDataPhysBCFunct::() 41 8.547e-05 9.173e-05 0.000101 0.00% FabArray::ParallelCopy() 41 6.861e-05 7.558e-05 8.864e-05 0.00% Castro::Castro() 1 5.416e-05 7.122e-05 8.64e-05 0.00% Castro::construct_old_source() 50 5.061e-05 6.85e-05 8.634e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.811e-06 1.458e-05 8.086e-05 0.00% Castro::do_old_sources() 10 5.458e-05 6.453e-05 7.812e-05 0.00% FillPatchSingleLevel 41 5.885e-05 6.936e-05 7.782e-05 0.00% FabArrayBase::getCPC() 41 4.467e-05 6.02e-05 7.659e-05 0.00% Amr::FinalizeInit() 1 3.169e-06 1.321e-05 7.242e-05 0.00% Castro::do_new_sources() 10 5.764e-05 6.477e-05 7.215e-05 0.00% Amr::writeSmallPlotFile() 1 2.717e-05 4.507e-05 6.04e-05 0.00% Castro::apply_source_to_state() 20 4.217e-05 5.026e-05 5.713e-05 0.00% Castro::advance() 10 3.813e-05 4.553e-05 5.324e-05 0.00% Castro::construct_new_gravity() 10 3.85e-05 4.318e-05 5.024e-05 0.00% Castro::subcycle_advance_ctu() 10 3.462e-05 4.223e-05 5.004e-05 0.00% Castro::construct_old_gravity() 10 3.601e-05 4.205e-05 4.922e-05 0.00% Amr::defBaseLevel() 1 1.95e-05 2.772e-05 3.829e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.404e-05 3.014e-05 3.826e-05 0.00% Castro::enforce_speed_limit() 62 2.68e-05 2.96e-05 3.564e-05 0.00% Castro::check_for_nan() 20 2.143e-05 2.573e-05 3.057e-05 0.00% Amr::initSubcycle() 1 1.036e-05 1.574e-05 2.724e-05 0.00% FabArrayBase::CPC::define() 2 2.05e-05 2.333e-05 2.667e-05 0.00% Castro::post_timestep() 10 1.278e-05 1.527e-05 1.76e-05 0.00% Gravity::swapTimeLevels() 10 1.15e-05 1.345e-05 1.658e-05 0.00% Castro::create_source_corrector() 10 6.679e-06 9.905e-06 1.459e-05 0.00% Gravity::set_mass_offset() 10 9.003e-06 1.113e-05 1.309e-05 0.00% Castro::post_regrid() 1 2.025e-06 3.855e-06 1.064e-05 0.00% Castro::post_init() 1 3.02e-06 4.255e-06 1.052e-05 0.00% Castro::FluxRegCrseInit 10 8.626e-06 9.545e-06 1.023e-05 0.00% Castro::computeNewDt() 9 6.817e-06 7.573e-06 8.597e-06 0.00% Castro::retry_advance_ctu() 10 4.87e-06 5.543e-06 5.992e-06 0.00% Castro::computeInitialDt() 2 3.331e-06 4.088e-06 5.416e-06 0.00% Amr::InitializeInit() 1 2.379e-06 3.404e-06 5.308e-06 0.00% Castro::FluxRegFineAdd() 10 1.894e-06 2.288e-06 3.425e-06 0.00% Amr::init() 1 1.826e-06 2.269e-06 2.79e-06 0.00% Amr::initialInit() 1 1.536e-06 1.846e-06 2.066e-06 0.00% DistributionMapping::Distribute() 1 1.027e-06 1.331e-06 1.836e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.567 3.568 3.569 100.00% Amr::coarseTimeStep() 10 3.343 3.343 3.343 93.67% Amr::timeStep() 10 3.33 3.331 3.331 93.35% Castro::advance() 10 3.314 3.314 3.315 92.89% Castro::subcycle_advance_ctu() 10 3.235 3.241 3.254 91.17% Castro::do_advance_ctu() 10 3.235 3.241 3.254 91.17% Castro::construct_ctu_hydro_source() 10 2.307 2.353 2.407 67.46% Gravity::make_radial_gravity() 21 0.3417 0.348 0.3589 10.06% Gravity::get_new_grav_vector() 11 0.2256 0.228 0.2295 6.43% Castro::construct_old_gravity() 10 0.1975 0.2018 0.2103 5.89% Gravity::get_old_grav_vector() 10 0.1967 0.2011 0.2097 5.87% Amr::init() 1 0.2079 0.208 0.2082 5.83% Castro::construct_new_gravity() 10 0.1987 0.2005 0.2015 5.65% Amr::initialInit() 1 0.1914 0.1918 0.1922 5.39% FillPatchIterator::Initialize 41 0.1571 0.168 0.1906 5.34% Castro::initialize_do_advance() 10 0.1574 0.1632 0.1688 4.73% Amr::InitializeInit() 1 0.06548 0.1166 0.1606 4.50% Amr::defBaseLevel() 1 0.06548 0.1166 0.1606 4.50% FillPatchSingleLevel 41 0.1102 0.1236 0.153 4.29% Castro::initData() 1 0.04758 0.09615 0.1417 3.97% Castro::estTimeStep() 21 0.02094 0.0728 0.1287 3.61% Castro::expand_state() 10 0.1079 0.1161 0.1274 3.57% Amr::FinalizeInit() 1 0.03142 0.07513 0.1263 3.54% Castro::clean_state() 62 0.1153 0.1176 0.1221 3.42% FabArray::ParallelCopy() 41 0.07672 0.08855 0.1197 3.35% Castro::computeInitialDt() 2 0.002344 0.04619 0.09731 2.73% FabArray::ParallelCopy_finish() 41 0.03456 0.04724 0.0824 2.31% amrex::Copy() 193 0.0609 0.07152 0.0783 2.19% FabArray::setVal() 143 0.05677 0.0674 0.07654 2.14% Castro::initialize_advance() 10 0.05645 0.07003 0.07631 2.14% Castro::do_new_sources() 10 0.06122 0.06648 0.07469 2.09% Castro::computeTemp() 63 0.06818 0.07015 0.07428 2.08% Castro::reset_internal_energy(MultiFab) 63 0.04883 0.05023 0.05301 1.49% Castro::reset_internal_energy(Fab) 1008 0.04855 0.04994 0.05272 1.48% Castro::do_old_sources() 10 0.04048 0.04553 0.04681 1.31% Castro::normalize_species() 62 0.04121 0.04221 0.04566 1.28% FabArray::ParallelCopy_nowait() 41 0.03723 0.04123 0.04285 1.20% StateDataPhysBCFunct::() 41 0.03319 0.03496 0.03754 1.05% StateData::FillBoundary(geom) 41 0.03309 0.03487 0.03745 1.05% Castro::construct_new_source() 50 0.02947 0.03214 0.03607 1.01% Castro::construct_new_gravity_source() 10 0.02327 0.02582 0.02946 0.83% Gravity::interpolate_monopole_grav() 21 0.02801 0.0285 0.02914 0.82% Castro::post_init() 1 0.02824 0.02845 0.02863 0.80% Amr::writePlotFile() 2 0.02652 0.0268 0.02712 0.76% VisMF::Write(FabArray) 2 0.01312 0.01416 0.01726 0.48% Castro::post_timestep() 10 0.01546 0.016 0.01648 0.46% Castro::Castro() 1 0.009725 0.01291 0.01504 0.42% Castro::apply_source_to_state() 20 0.01268 0.01413 0.01483 0.42% FabArray::Saxpy() 20 0.01263 0.01408 0.01478 0.41% Castro::check_for_nan() 20 0.01135 0.01205 0.01301 0.36% MultiFab::contains_nan() 20 0.01132 0.01203 0.01298 0.36% FabArray::setDomainBndry() 41 0.008805 0.01114 0.01238 0.35% Castro::construct_old_source() 50 0.007785 0.01027 0.01083 0.30% Castro::construct_old_gravity_source() 10 0.007734 0.0102 0.01075 0.30% Castro::initMFs() 1 0.006845 0.00889 0.01028 0.29% AmrLevel::AmrLevel(dm) 1 0.005884 0.00743 0.008486 0.24% StateData::define() 4 0.005855 0.007399 0.008452 0.24% Castro::computeNewDt() 9 0.008386 0.008395 0.008405 0.24% Castro::enforce_min_density() 62 0.005737 0.006109 0.006345 0.18% Castro::swap_state_time_levels() 10 0.003311 0.004435 0.005319 0.15% Castro::finalize_advance() 10 0.003003 0.003452 0.004002 0.11% Castro::buildMetrics() 1 0.001729 0.002258 0.002611 0.07% Castro::post_regrid() 1 0.001531 0.00168 0.001915 0.05% Castro::finalize_do_advance() 10 0.0006446 0.001518 0.001836 0.05% Amr::InitAmr() 1 0.000337 0.0004531 0.0005343 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.432e-05 0.000122 0.0003118 0.01% DistributionMapping::LeastUsedCPUs() 1 8.576e-06 0.0001061 0.0002316 0.01% Castro::enforce_consistent_e() 1 8.25e-05 9.343e-05 0.00011 0.00% FabArrayBase::getCPC() 41 6.517e-05 8.354e-05 9.981e-05 0.00% Amr::writeSmallPlotFile() 1 2.717e-05 4.507e-05 6.04e-05 0.00% Castro::enforce_speed_limit() 62 2.68e-05 2.96e-05 3.564e-05 0.00% Amr::initSubcycle() 1 1.036e-05 1.574e-05 2.724e-05 0.00% FabArrayBase::CPC::define() 2 2.05e-05 2.333e-05 2.667e-05 0.00% Gravity::swapTimeLevels() 10 1.15e-05 1.345e-05 1.658e-05 0.00% Castro::create_source_corrector() 10 6.679e-06 9.905e-06 1.459e-05 0.00% Gravity::set_mass_offset() 10 9.003e-06 1.113e-05 1.309e-05 0.00% Castro::FluxRegCrseInit 10 8.626e-06 9.545e-06 1.023e-05 0.00% Castro::retry_advance_ctu() 10 4.87e-06 5.543e-06 5.992e-06 0.00% Castro::FluxRegFineAdd() 10 1.894e-06 2.288e-06 3.425e-06 0.00% DistributionMapping::Distribute() 1 1.027e-06 1.331e-06 1.836e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 39 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-9-g1e73fa8ec7c3) finalized