MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-13-g2f68f00d5f56) initialized Starting run at 05:35:42 UTC on 2023-04-07. Successfully read inputs file ... Castro git describe: 23.04-2-gabeccccb9 AMReX git describe: 23.04-13-g2f68f00d5 Microphysics git describe: 23.04-3-gdc41ef4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017083622 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.372442164 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.367144298 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333548212 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333358222 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.353492583 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.33814579 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311865539 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311810684 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311283261 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310706211 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010154782 seconds Ending run at 05:35:45 UTC on 2023-04-07. Run time = 3.544309353 Run time without initialization = 3.361818267 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.543 ... 3.544 ... 3.544 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2961 2.3538 2.4114 68.03% Gravity::make_radial_gravity() 21 0.3214 0.3332 0.3453 9.74% Castro::do_advance_ctu() 10 0.02216 0.08462 0.145 4.09% Castro::initData() 1 0.0384 0.07777 0.1138 3.21% Castro::estTimeStep() 21 0.02168 0.0669 0.1129 3.19% FabArray::setVal() 143 0.06616 0.07551 0.0886 2.50% amrex::Copy() 193 0.06405 0.07109 0.07835 2.21% FabArray::ParallelCopy_finish() 41 0.03556 0.04818 0.0587 1.66% Castro::reset_internal_energy(Fab) 1008 0.04795 0.0509 0.05312 1.50% FabArray::ParallelCopy_nowait() 41 0.03684 0.04152 0.04385 1.24% Castro::normalize_species() 62 0.04116 0.0422 0.04342 1.23% StateData::FillBoundary(geom) 41 0.0318 0.03598 0.04319 1.22% FillPatchIterator::Initialize 41 0.03001 0.03341 0.0358 1.01% Castro::construct_new_gravity_source() 10 0.02311 0.02654 0.03103 0.88% Gravity::interpolate_monopole_grav() 21 0.02795 0.02847 0.02916 0.82% Castro::computeTemp() 63 0.019 0.02022 0.02126 0.60% Castro::initialize_do_advance() 10 0.01296 0.01746 0.02039 0.58% VisMF::Write(FabArray) 2 0.01321 0.01397 0.01741 0.49% FabArray::Saxpy() 20 0.01306 0.01413 0.01488 0.42% Castro::initialize_advance() 10 0.01007 0.01234 0.01466 0.41% FabArray::setDomainBndry() 41 0.008752 0.01133 0.01276 0.36% MultiFab::contains_nan() 20 0.01051 0.01142 0.01226 0.35% Amr::writePlotFile() 2 0.007166 0.01071 0.01153 0.33% Castro::construct_old_gravity_source() 10 0.00744 0.01017 0.01085 0.31% Castro::initMFs() 1 0.007102 0.007365 0.009082 0.26% main() 1 0.005412 0.006435 0.007152 0.20% StateData::define() 4 0.005837 0.005969 0.006713 0.19% Castro::enforce_min_density() 62 0.005936 0.006151 0.006595 0.19% Castro::construct_new_source() 50 0.005804 0.006198 0.006526 0.18% Gravity::get_new_grav_vector() 11 0.002979 0.003813 0.005446 0.15% Castro::swap_state_time_levels() 10 0.003588 0.004754 0.00494 0.14% Amr::coarseTimeStep() 10 0.001071 0.002202 0.003326 0.09% Gravity::get_old_grav_vector() 10 0.00173 0.002303 0.002573 0.07% Castro::buildMetrics() 1 0.001663 0.001715 0.001963 0.06% Castro::finalize_do_advance() 10 0.0006553 0.00151 0.001807 0.05% Castro::expand_state() 10 0.0006501 0.0009063 0.001119 0.03% Amr::InitAmr() 1 0.000286 0.0003199 0.0004796 0.01% Amr::timeStep() 10 0.0001807 0.0002458 0.0004515 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002775 0.0002923 0.0003176 0.01% Castro::clean_state() 62 0.0001398 0.0001769 0.0002061 0.01% DistributionMapping::LeastUsedCPUs() 1 7.111e-06 0.0001637 0.0001958 0.01% StateDataPhysBCFunct::() 41 8.002e-05 9.531e-05 0.0001365 0.00% Castro::finalize_advance() 10 8.873e-05 0.0001044 0.0001185 0.00% Castro::enforce_consistent_e() 1 7.87e-05 8.983e-05 9.991e-05 0.00% Castro::Castro() 1 5.699e-05 7.507e-05 8.813e-05 0.00% FillPatchSingleLevel 41 6.025e-05 6.796e-05 7.856e-05 0.00% Amr::FinalizeInit() 1 4.304e-06 1.508e-05 7.812e-05 0.00% FabArray::ParallelCopy() 41 5.879e-05 6.875e-05 7.72e-05 0.00% Castro::construct_old_source() 50 5.038e-05 6.58e-05 7.694e-05 0.00% Castro::do_new_sources() 10 5.286e-05 6.296e-05 7.291e-05 0.00% Castro::do_old_sources() 10 4.861e-05 5.965e-05 6.662e-05 0.00% FabArrayBase::getCPC() 41 4.237e-05 5.479e-05 6.202e-05 0.00% Amr::writeSmallPlotFile() 1 2.601e-05 4.809e-05 5.792e-05 0.00% Castro::subcycle_advance_ctu() 10 3.956e-05 4.744e-05 5.697e-05 0.00% Castro::apply_source_to_state() 20 3.075e-05 4.512e-05 5.167e-05 0.00% Castro::advance() 10 3.726e-05 4.482e-05 5.032e-05 0.00% Castro::construct_old_gravity() 10 3.694e-05 4.13e-05 4.964e-05 0.00% Castro::construct_new_gravity() 10 3.542e-05 4.08e-05 4.64e-05 0.00% Amr::defBaseLevel() 1 1.783e-05 3.025e-05 4.19e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.617e-05 2.291e-05 3.717e-05 0.00% Castro::check_for_nan() 20 2.077e-05 2.423e-05 3.212e-05 0.00% Castro::enforce_speed_limit() 62 2.386e-05 2.586e-05 2.895e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.344e-05 2.891e-05 0.00% Gravity::swapTimeLevels() 10 1.03e-05 1.411e-05 2.271e-05 0.00% Amr::initSubcycle() 1 8.882e-06 1.103e-05 2.229e-05 0.00% Castro::post_timestep() 10 1.386e-05 1.65e-05 2.052e-05 0.00% Gravity::set_mass_offset() 10 9.371e-06 1.101e-05 1.335e-05 0.00% Castro::post_init() 1 3.525e-06 5.629e-06 1.234e-05 0.00% Castro::FluxRegCrseInit 10 8.396e-06 9.387e-06 1.103e-05 0.00% Castro::create_source_corrector() 10 6.955e-06 8.923e-06 1.063e-05 0.00% Castro::computeNewDt() 9 7.154e-06 8.42e-06 9.222e-06 0.00% Castro::retry_advance_ctu() 10 4.735e-06 5.594e-06 6.788e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.512e-06 4.521e-06 6.527e-06 0.00% Castro::computeInitialDt() 2 3.81e-06 4.841e-06 5.444e-06 0.00% Amr::InitializeInit() 1 1.979e-06 2.913e-06 5.004e-06 0.00% Castro::post_regrid() 1 2.151e-06 2.941e-06 4.582e-06 0.00% DistributionMapping::Distribute() 1 9.48e-07 1.533e-06 4.144e-06 0.00% Castro::FluxRegFineAdd() 10 1.887e-06 2.239e-06 3.264e-06 0.00% Amr::init() 1 1.863e-06 2.16e-06 2.511e-06 0.00% Amr::initialInit() 1 1.347e-06 1.654e-06 2.095e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.543 3.544 3.544 100.00% Amr::coarseTimeStep() 10 3.345 3.345 3.345 94.36% Amr::timeStep() 10 3.331 3.332 3.334 94.05% Castro::advance() 10 3.316 3.316 3.317 93.59% Castro::subcycle_advance_ctu() 10 3.225 3.233 3.24 91.42% Castro::do_advance_ctu() 10 3.225 3.233 3.24 91.41% Castro::construct_ctu_hydro_source() 10 2.296 2.354 2.411 68.03% Gravity::make_radial_gravity() 21 0.3369 0.3499 0.3611 10.19% Gravity::get_new_grav_vector() 11 0.221 0.2253 0.2282 6.44% Castro::construct_old_gravity() 10 0.1984 0.2068 0.2179 6.15% Gravity::get_old_grav_vector() 10 0.1977 0.2061 0.2173 6.13% Castro::construct_new_gravity() 10 0.1968 0.2001 0.2022 5.71% FillPatchIterator::Initialize 41 0.1539 0.1707 0.1881 5.31% Amr::init() 1 0.1819 0.182 0.1821 5.14% Castro::initialize_do_advance() 10 0.149 0.1649 0.1781 5.03% Amr::initialInit() 1 0.1643 0.1646 0.1648 4.65% FillPatchSingleLevel 41 0.1136 0.126 0.1403 3.96% Amr::InitializeInit() 1 0.06031 0.09992 0.1358 3.83% Amr::defBaseLevel() 1 0.06031 0.09992 0.1358 3.83% Castro::expand_state() 10 0.1055 0.1171 0.1315 3.71% Castro::clean_state() 62 0.1146 0.119 0.1222 3.45% Castro::initData() 1 0.04239 0.08188 0.118 3.33% Castro::estTimeStep() 21 0.02168 0.0669 0.1129 3.19% Amr::FinalizeInit() 1 0.029 0.06467 0.1045 2.95% FabArray::ParallelCopy() 41 0.07955 0.08985 0.09948 2.81% FabArray::setVal() 143 0.06616 0.07551 0.0886 2.50% Castro::initialize_advance() 10 0.07251 0.0797 0.08764 2.47% amrex::Copy() 193 0.06405 0.07109 0.07835 2.21% Castro::computeInitialDt() 2 0.002522 0.03836 0.07801 2.20% Castro::do_new_sources() 10 0.05994 0.06722 0.07694 2.17% Castro::computeTemp() 63 0.06819 0.07141 0.07418 2.09% FabArray::ParallelCopy_finish() 41 0.03556 0.04818 0.0587 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04824 0.0512 0.05341 1.51% Castro::reset_internal_energy(Fab) 1008 0.04795 0.0509 0.05312 1.50% Castro::do_old_sources() 10 0.0421 0.04539 0.04651 1.31% FabArray::ParallelCopy_nowait() 41 0.03691 0.0416 0.04393 1.24% Castro::normalize_species() 62 0.04116 0.0422 0.04342 1.23% StateDataPhysBCFunct::() 41 0.03189 0.03608 0.04333 1.22% StateData::FillBoundary(geom) 41 0.0318 0.03598 0.04319 1.22% Castro::construct_new_source() 50 0.02924 0.03274 0.03756 1.06% Castro::construct_new_gravity_source() 10 0.02311 0.02654 0.03103 0.88% Gravity::interpolate_monopole_grav() 21 0.02795 0.02847 0.02916 0.82% Amr::writePlotFile() 2 0.02748 0.02768 0.028 0.79% Castro::post_init() 1 0.02593 0.02627 0.02648 0.75% VisMF::Write(FabArray) 2 0.01321 0.01397 0.01741 0.49% Castro::post_timestep() 10 0.01548 0.01586 0.01614 0.46% Castro::apply_source_to_state() 20 0.0131 0.01418 0.01492 0.42% FabArray::Saxpy() 20 0.01306 0.01413 0.01488 0.42% FabArray::setDomainBndry() 41 0.008752 0.01133 0.01276 0.36% Castro::Castro() 1 0.01165 0.01184 0.01267 0.36% Castro::check_for_nan() 20 0.01053 0.01145 0.01229 0.35% MultiFab::contains_nan() 20 0.01051 0.01142 0.01226 0.35% Castro::construct_old_source() 50 0.007493 0.01023 0.0109 0.31% Castro::construct_old_gravity_source() 10 0.00744 0.01017 0.01085 0.31% Castro::initMFs() 1 0.007102 0.007365 0.009082 0.26% Castro::computeNewDt() 9 0.008438 0.008445 0.008452 0.24% AmrLevel::AmrLevel(dm) 1 0.005855 0.005992 0.00675 0.19% StateData::define() 4 0.005837 0.005969 0.006713 0.19% Castro::enforce_min_density() 62 0.005936 0.006151 0.006595 0.19% Castro::swap_state_time_levels() 10 0.003588 0.004754 0.00494 0.14% Castro::finalize_advance() 10 0.003002 0.003738 0.004514 0.13% Castro::buildMetrics() 1 0.001788 0.001847 0.002126 0.06% Castro::finalize_do_advance() 10 0.0006553 0.00151 0.001807 0.05% Castro::post_regrid() 1 0.00153 0.001601 0.001678 0.05% Amr::InitAmr() 1 0.0002952 0.0003309 0.00049 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.205e-05 0.0001698 0.0002029 0.01% DistributionMapping::LeastUsedCPUs() 1 7.111e-06 0.0001637 0.0001958 0.01% Castro::enforce_consistent_e() 1 7.87e-05 8.983e-05 9.991e-05 0.00% FabArrayBase::getCPC() 41 6.546e-05 7.823e-05 9.074e-05 0.00% Amr::writeSmallPlotFile() 1 2.601e-05 4.809e-05 5.792e-05 0.00% Castro::enforce_speed_limit() 62 2.386e-05 2.586e-05 2.895e-05 0.00% FabArrayBase::CPC::define() 2 2.031e-05 2.344e-05 2.891e-05 0.00% Gravity::swapTimeLevels() 10 1.03e-05 1.411e-05 2.271e-05 0.00% Amr::initSubcycle() 1 8.882e-06 1.103e-05 2.229e-05 0.00% Gravity::set_mass_offset() 10 9.371e-06 1.101e-05 1.335e-05 0.00% Castro::FluxRegCrseInit 10 8.396e-06 9.387e-06 1.103e-05 0.00% Castro::create_source_corrector() 10 6.955e-06 8.923e-06 1.063e-05 0.00% Castro::retry_advance_ctu() 10 4.735e-06 5.594e-06 6.788e-06 0.00% DistributionMapping::Distribute() 1 9.48e-07 1.533e-06 4.144e-06 0.00% Castro::FluxRegFineAdd() 10 1.887e-06 2.239e-06 3.264e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-13-g2f68f00d5f56) finalized