MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-17-g8cae8024915f) initialized Starting run at 05:25:15 UTC on 2023-04-10. Successfully read inputs file ... Castro git describe: 23.04-6-gc2542242e AMReX git describe: 23.04-17-g8cae80249 Microphysics git describe: 23.04-3-gdc41ef4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019670779 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366028102 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353758885 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.393758509 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.330287425 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.359462423 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.327287612 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31438557 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313728726 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312077769 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313973042 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010263558 seconds Ending run at 05:25:18 UTC on 2023-04-10. Run time = 3.650279171 Run time without initialization = 3.401653237 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.65 ... 3.65 ... 3.65 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2989 2.3505 2.4305 66.58% Gravity::make_radial_gravity() 21 0.3551 0.3672 0.3786 10.37% Castro::do_advance_ctu() 10 0.02341 0.1089 0.1617 4.43% Castro::estTimeStep() 21 0.02538 0.09351 0.1615 4.43% Castro::initData() 1 0.03846 0.0975 0.1548 4.24% FabArray::ParallelCopy_finish() 41 0.04191 0.05708 0.08698 2.38% amrex::Copy() 193 0.06208 0.07071 0.07831 2.15% FabArray::setVal() 143 0.05498 0.06426 0.07313 2.00% Castro::reset_internal_energy(Fab) 1008 0.04969 0.05179 0.05421 1.49% Castro::normalize_species() 62 0.04177 0.04332 0.04491 1.23% StateData::FillBoundary(geom) 41 0.0329 0.03697 0.04427 1.21% FabArray::ParallelCopy_nowait() 41 0.03772 0.04177 0.04329 1.19% FillPatchIterator::Initialize 41 0.02862 0.03463 0.03706 1.02% Gravity::interpolate_monopole_grav() 21 0.02818 0.02913 0.02979 0.82% Castro::construct_new_gravity_source() 10 0.02311 0.02532 0.0284 0.78% Castro::computeTemp() 63 0.02018 0.02082 0.02188 0.60% Castro::initialize_do_advance() 10 0.01163 0.01747 0.01939 0.53% VisMF::Write(FabArray) 2 0.01291 0.01461 0.0183 0.50% Amr::writePlotFile() 2 0.009174 0.0134 0.01603 0.44% FabArray::Saxpy() 20 0.01273 0.01386 0.01465 0.40% Castro::initialize_advance() 10 0.004164 0.009813 0.01318 0.36% FabArray::setDomainBndry() 41 0.00896 0.01159 0.01278 0.35% MultiFab::contains_nan() 20 0.01012 0.01117 0.01177 0.32% Castro::construct_old_gravity_source() 10 0.008621 0.01021 0.01098 0.30% Castro::initMFs() 1 0.006962 0.008669 0.01042 0.29% StateData::define() 4 0.0058 0.007176 0.008533 0.23% Castro::enforce_min_density() 62 0.005753 0.006107 0.006375 0.17% Castro::construct_new_source() 50 0.005676 0.006137 0.006316 0.17% Castro::swap_state_time_levels() 10 0.003654 0.004784 0.006203 0.17% main() 1 0.005427 0.005739 0.00593 0.16% Gravity::get_new_grav_vector() 11 0.003049 0.003967 0.004278 0.12% Amr::coarseTimeStep() 10 0.001932 0.002435 0.003238 0.09% Gravity::get_old_grav_vector() 10 0.001895 0.002408 0.002845 0.08% Castro::buildMetrics() 1 0.001641 0.00209 0.002429 0.07% Castro::finalize_do_advance() 10 0.0005556 0.001582 0.002039 0.06% Castro::expand_state() 10 0.0006003 0.0008944 0.001099 0.03% Amr::InitAmr() 1 0.0002861 0.0004293 0.0006813 0.02% DistributionMapping::LeastUsedCPUs() 1 7.528e-06 0.0002775 0.000435 0.01% Amr::timeStep() 10 0.0001522 0.0002336 0.0004255 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002835 0.000307 0.0003269 0.01% Castro::enforce_consistent_e() 1 8.651e-05 0.00012 0.0001738 0.00% Castro::clean_state() 62 0.0001399 0.0001505 0.0001695 0.00% Castro::finalize_advance() 10 8.192e-05 9.782e-05 0.0001237 0.00% StateDataPhysBCFunct::() 41 8.038e-05 9.1e-05 9.669e-05 0.00% Amr::FinalizeInit() 1 3.82e-06 1.573e-05 8.689e-05 0.00% Castro::construct_old_source() 50 5.279e-05 6.442e-05 8.586e-05 0.00% FillPatchSingleLevel 41 6.257e-05 7.245e-05 8.581e-05 0.00% Castro::Castro() 1 5.481e-05 7.018e-05 8.493e-05 0.00% FabArray::ParallelCopy() 41 6.231e-05 6.81e-05 7.221e-05 0.00% FabArrayBase::getCPC() 41 3.829e-05 5.455e-05 7.143e-05 0.00% Castro::do_new_sources() 10 5.485e-05 6.141e-05 7.114e-05 0.00% Castro::do_old_sources() 10 5.356e-05 6.036e-05 6.521e-05 0.00% Amr::writeSmallPlotFile() 1 2.666e-05 4.299e-05 5.674e-05 0.00% Castro::subcycle_advance_ctu() 10 3.49e-05 4.45e-05 5.462e-05 0.00% Castro::apply_source_to_state() 20 4.193e-05 4.7e-05 5.201e-05 0.00% Castro::advance() 10 3.258e-05 3.999e-05 4.793e-05 0.00% Castro::construct_old_gravity() 10 3.676e-05 3.906e-05 4.72e-05 0.00% Castro::construct_new_gravity() 10 3.454e-05 3.863e-05 4.444e-05 0.00% Amr::defBaseLevel() 1 1.872e-05 2.796e-05 4.394e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.488e-05 2.976e-05 3.913e-05 0.00% FabArrayBase::CPC::define() 2 2.247e-05 2.765e-05 3.324e-05 0.00% Castro::enforce_speed_limit() 62 2.445e-05 2.698e-05 3.005e-05 0.00% Castro::check_for_nan() 20 2.03e-05 2.238e-05 2.382e-05 0.00% Castro::post_timestep() 10 1.472e-05 1.673e-05 2.186e-05 0.00% Gravity::swapTimeLevels() 10 8.729e-06 1.282e-05 2.17e-05 0.00% Amr::initSubcycle() 1 8.91e-06 1.245e-05 1.596e-05 0.00% Gravity::set_mass_offset() 10 8.754e-06 1.057e-05 1.201e-05 0.00% Castro::create_source_corrector() 10 7.533e-06 9.123e-06 1.14e-05 0.00% Castro::FluxRegCrseInit 10 7.247e-06 9.153e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 5.243e-06 6.074e-06 9.761e-06 0.00% Castro::computeNewDt() 9 7.445e-06 8.099e-06 9.353e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.849e-06 5.871e-06 8.774e-06 0.00% Castro::post_regrid() 1 3.093e-06 3.798e-06 7.116e-06 0.00% Amr::InitializeInit() 1 2.015e-06 3.53e-06 6.755e-06 0.00% Castro::computeInitialDt() 2 3.782e-06 4.918e-06 6.399e-06 0.00% Castro::post_init() 1 3.467e-06 4.466e-06 6.226e-06 0.00% Amr::init() 1 2.092e-06 2.482e-06 3.432e-06 0.00% Castro::FluxRegFineAdd() 10 1.75e-06 2.423e-06 3.147e-06 0.00% Amr::initialInit() 1 1.202e-06 1.745e-06 2.374e-06 0.00% DistributionMapping::Distribute() 1 9.58e-07 1.19e-06 1.459e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.65 3.65 3.65 100.00% Amr::coarseTimeStep() 10 3.386 3.386 3.386 92.75% Amr::timeStep() 10 3.371 3.371 3.372 92.37% Castro::advance() 10 3.355 3.355 3.356 91.93% Castro::subcycle_advance_ctu() 10 3.275 3.283 3.296 90.29% Castro::do_advance_ctu() 10 3.275 3.283 3.296 90.29% Castro::construct_ctu_hydro_source() 10 2.299 2.351 2.431 66.58% Gravity::make_radial_gravity() 21 0.3701 0.3834 0.3962 10.85% Amr::init() 1 0.2478 0.248 0.2482 6.80% Castro::construct_old_gravity() 10 0.2222 0.2319 0.242 6.63% Gravity::get_old_grav_vector() 10 0.2213 0.2312 0.2414 6.61% Gravity::get_new_grav_vector() 11 0.235 0.2378 0.2395 6.56% Amr::initialInit() 1 0.227 0.228 0.2289 6.27% FillPatchIterator::Initialize 41 0.1661 0.1823 0.2009 5.50% Castro::construct_new_gravity() 10 0.1968 0.1987 0.1999 5.48% Amr::InitializeInit() 1 0.05911 0.1225 0.1839 5.04% Amr::defBaseLevel() 1 0.05911 0.1225 0.1839 5.04% Castro::initialize_do_advance() 10 0.1574 0.1704 0.1789 4.90% Amr::FinalizeInit() 1 0.04428 0.1055 0.1686 4.62% FillPatchSingleLevel 41 0.1194 0.1361 0.163 4.47% Castro::estTimeStep() 21 0.02538 0.09351 0.1615 4.43% Castro::initData() 1 0.04237 0.1021 0.16 4.38% Castro::expand_state() 10 0.1071 0.1216 0.1343 3.68% Castro::computeInitialDt() 2 0.003226 0.06477 0.1284 3.52% Castro::clean_state() 62 0.1172 0.1213 0.1252 3.43% FabArray::ParallelCopy() 41 0.08304 0.099 0.1249 3.42% FabArray::ParallelCopy_finish() 41 0.04191 0.05708 0.08698 2.38% amrex::Copy() 193 0.06208 0.07071 0.07831 2.15% Castro::computeTemp() 63 0.07026 0.07292 0.0764 2.09% Castro::initialize_advance() 10 0.05488 0.06892 0.07609 2.08% FabArray::setVal() 143 0.05498 0.06426 0.07313 2.00% Castro::do_new_sources() 10 0.06022 0.06452 0.07169 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04999 0.0521 0.05452 1.49% Castro::reset_internal_energy(Fab) 1008 0.04969 0.05179 0.05421 1.49% Castro::do_old_sources() 10 0.04444 0.04578 0.0486 1.33% Castro::normalize_species() 62 0.04177 0.04332 0.04491 1.23% StateDataPhysBCFunct::() 41 0.03299 0.03706 0.04437 1.22% StateData::FillBoundary(geom) 41 0.0329 0.03697 0.04427 1.21% FabArray::ParallelCopy_nowait() 41 0.03782 0.04185 0.04336 1.19% Castro::post_init() 1 0.03959 0.04011 0.04139 1.13% Castro::construct_new_source() 50 0.02934 0.03146 0.03456 0.95% Amr::writePlotFile() 2 0.02965 0.03039 0.03157 0.86% Gravity::interpolate_monopole_grav() 21 0.02818 0.02913 0.02979 0.82% Castro::construct_new_gravity_source() 10 0.02311 0.02532 0.0284 0.78% VisMF::Write(FabArray) 2 0.01291 0.01461 0.0183 0.50% Castro::post_timestep() 10 0.01562 0.01608 0.01633 0.45% Castro::Castro() 1 0.01043 0.01286 0.01524 0.42% Castro::apply_source_to_state() 20 0.01277 0.01391 0.0147 0.40% FabArray::Saxpy() 20 0.01273 0.01386 0.01465 0.40% FabArray::setDomainBndry() 41 0.00896 0.01159 0.01278 0.35% Castro::check_for_nan() 20 0.01015 0.0112 0.0118 0.32% MultiFab::contains_nan() 20 0.01012 0.01117 0.01177 0.32% Castro::construct_old_source() 50 0.008674 0.01028 0.01105 0.30% Castro::construct_old_gravity_source() 10 0.008621 0.01021 0.01098 0.30% Castro::initMFs() 1 0.006962 0.008669 0.01042 0.29% Castro::computeNewDt() 9 0.009981 0.009983 0.009989 0.27% AmrLevel::AmrLevel(dm) 1 0.005831 0.007206 0.008572 0.23% StateData::define() 4 0.0058 0.007176 0.008533 0.23% Castro::enforce_min_density() 62 0.005753 0.006107 0.006375 0.17% Castro::swap_state_time_levels() 10 0.003654 0.004784 0.006203 0.17% Castro::finalize_advance() 10 0.002902 0.003375 0.003989 0.11% Castro::post_regrid() 1 0.001617 0.002305 0.002882 0.08% Castro::buildMetrics() 1 0.001762 0.00226 0.002646 0.07% Castro::finalize_do_advance() 10 0.0005556 0.001582 0.002039 0.06% Amr::InitAmr() 1 0.0002958 0.0004417 0.0006968 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.261e-05 0.0002845 0.0004432 0.01% DistributionMapping::LeastUsedCPUs() 1 7.528e-06 0.0002775 0.000435 0.01% Castro::enforce_consistent_e() 1 8.651e-05 0.00012 0.0001738 0.00% FabArrayBase::getCPC() 41 6.076e-05 8.221e-05 0.0001 0.00% Amr::writeSmallPlotFile() 1 2.666e-05 4.299e-05 5.674e-05 0.00% FabArrayBase::CPC::define() 2 2.247e-05 2.765e-05 3.324e-05 0.00% Castro::enforce_speed_limit() 62 2.445e-05 2.698e-05 3.005e-05 0.00% Gravity::swapTimeLevels() 10 8.729e-06 1.282e-05 2.17e-05 0.00% Amr::initSubcycle() 1 8.91e-06 1.245e-05 1.596e-05 0.00% Gravity::set_mass_offset() 10 8.754e-06 1.057e-05 1.201e-05 0.00% Castro::create_source_corrector() 10 7.533e-06 9.123e-06 1.14e-05 0.00% Castro::FluxRegCrseInit 10 7.247e-06 9.153e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 5.243e-06 6.074e-06 9.761e-06 0.00% Castro::FluxRegFineAdd() 10 1.75e-06 2.423e-06 3.147e-06 0.00% DistributionMapping::Distribute() 1 9.58e-07 1.19e-06 1.459e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 37 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-17-g8cae8024915f) finalized