MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-19-ga54fee8706c8) initialized Starting run at 20:06:23 UTC on 2023-04-11. Successfully read inputs file ... Castro git describe: 23.04-32-g32ca96b45 AMReX git describe: 23.04-19-ga54fee870 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018456523 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.364796645 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.34083796 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.355499624 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.33340207 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361913786 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332940819 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312571374 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312129525 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312441769 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313856356 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010250267 seconds Ending run at 20:06:27 UTC on 2023-04-11. Run time = 3.546817008 Run time without initialization = 3.358190735 Average number of zones advanced per microsecond: 0.781 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.545 ... 3.546 ... 3.547 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2870 2.3575 2.3960 67.55% Gravity::make_radial_gravity() 21 0.3308 0.3425 0.3538 9.97% Castro::do_advance_ctu() 10 0.02138 0.06476 0.1378 3.88% Castro::initData() 1 0.03871 0.07826 0.1151 3.25% Castro::estTimeStep() 21 0.02685 0.0682 0.1136 3.20% FabArray::setVal() 143 0.0652 0.07277 0.08184 2.31% amrex::Copy() 193 0.06511 0.07301 0.08147 2.30% FabArray::ParallelCopy_finish() 41 0.0373 0.05172 0.06558 1.85% Castro::reset_internal_energy(Fab) 1008 0.04839 0.05073 0.05381 1.52% FabArray::ParallelCopy_nowait() 41 0.03784 0.04263 0.0446 1.26% Castro::normalize_species() 62 0.04116 0.04218 0.04454 1.26% StateData::FillBoundary(geom) 41 0.03402 0.03718 0.04299 1.21% FillPatchIterator::Initialize 41 0.02925 0.03452 0.03663 1.03% Castro::construct_new_gravity_source() 10 0.02341 0.02585 0.03089 0.87% Gravity::interpolate_monopole_grav() 21 0.02813 0.02843 0.0289 0.81% Castro::computeTemp() 63 0.01928 0.02011 0.02098 0.59% Castro::initialize_do_advance() 10 0.01249 0.01758 0.01972 0.56% VisMF::Write(FabArray) 2 0.01346 0.01465 0.01875 0.53% FabArray::Saxpy() 20 0.01352 0.01427 0.01464 0.41% Castro::initialize_advance() 10 0.009808 0.01205 0.0144 0.41% FabArray::setDomainBndry() 41 0.009132 0.01179 0.0129 0.36% Amr::writePlotFile() 2 0.007548 0.01155 0.01273 0.36% MultiFab::contains_nan() 20 0.01025 0.01124 0.0126 0.36% Castro::construct_old_gravity_source() 10 0.00723 0.0103 0.01109 0.31% Castro::initMFs() 1 0.006961 0.007378 0.008641 0.24% Castro::enforce_min_density() 62 0.00587 0.006246 0.006867 0.19% main() 1 0.005319 0.006357 0.006828 0.19% StateData::define() 4 0.005791 0.006018 0.006635 0.19% Castro::construct_new_source() 50 0.005703 0.006139 0.006353 0.18% Gravity::get_new_grav_vector() 11 0.003036 0.004167 0.005861 0.17% Castro::swap_state_time_levels() 10 0.003823 0.004741 0.005138 0.14% Amr::coarseTimeStep() 10 0.001587 0.002509 0.003404 0.10% Gravity::get_old_grav_vector() 10 0.00179 0.002472 0.002826 0.08% Castro::buildMetrics() 1 0.001649 0.001737 0.002027 0.06% Castro::finalize_do_advance() 10 0.0006413 0.001548 0.001978 0.06% Castro::expand_state() 10 0.0007407 0.0008797 0.00103 0.03% Amr::InitAmr() 1 0.0002699 0.0003089 0.0004779 0.01% Amr::timeStep() 10 0.000203 0.0002531 0.000437 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002734 0.0003111 0.0003533 0.01% DistributionMapping::LeastUsedCPUs() 1 7.357e-06 0.0001824 0.0002201 0.01% Castro::clean_state() 62 0.0001416 0.0001657 0.0002122 0.01% Castro::finalize_advance() 10 8.983e-05 0.000108 0.0001433 0.00% StateDataPhysBCFunct::() 41 8.865e-05 9.727e-05 0.0001136 0.00% Castro::enforce_consistent_e() 1 7.928e-05 8.571e-05 9.23e-05 0.00% Castro::do_new_sources() 10 6.278e-05 7.12e-05 9.198e-05 0.00% FabArray::ParallelCopy() 41 7.206e-05 7.716e-05 8.41e-05 0.00% Castro::Castro() 1 5.696e-05 6.452e-05 8.148e-05 0.00% FillPatchSingleLevel 41 6.62e-05 7.125e-05 7.967e-05 0.00% Amr::FinalizeInit() 1 4.028e-06 1.382e-05 7.818e-05 0.00% Castro::construct_old_source() 50 5.306e-05 6.557e-05 7.61e-05 0.00% Castro::do_old_sources() 10 5.8e-05 6.587e-05 7.204e-05 0.00% Amr::writeSmallPlotFile() 1 2.724e-05 4.479e-05 6.605e-05 0.00% FabArrayBase::getCPC() 41 4.429e-05 5.425e-05 6.199e-05 0.00% Castro::construct_old_gravity() 10 3.632e-05 4.403e-05 5.98e-05 0.00% Castro::subcycle_advance_ctu() 10 4.069e-05 4.716e-05 5.543e-05 0.00% Castro::apply_source_to_state() 20 4.151e-05 4.899e-05 5.369e-05 0.00% Castro::advance() 10 3.701e-05 4.175e-05 4.506e-05 0.00% Castro::construct_new_gravity() 10 3.63e-05 4.056e-05 4.505e-05 0.00% Amr::defBaseLevel() 1 1.599e-05 2.412e-05 3.967e-05 0.00% FabArrayBase::CPC::define() 2 2.182e-05 2.5e-05 3.435e-05 0.00% Castro::check_for_nan() 20 2.167e-05 2.511e-05 3.366e-05 0.00% Castro::enforce_speed_limit() 62 2.491e-05 2.731e-05 3.004e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.688e-05 2.254e-05 2.695e-05 0.00% Castro::post_timestep() 10 1.425e-05 1.6e-05 1.738e-05 0.00% Gravity::swapTimeLevels() 10 1.075e-05 1.299e-05 1.502e-05 0.00% Gravity::set_mass_offset() 10 9.079e-06 1.042e-05 1.091e-05 0.00% Castro::FluxRegCrseInit 10 7.567e-06 9.118e-06 1.089e-05 0.00% Amr::initSubcycle() 1 8.706e-06 9.636e-06 1.07e-05 0.00% Castro::create_source_corrector() 10 6.683e-06 8.453e-06 9.625e-06 0.00% Castro::computeNewDt() 9 7.078e-06 7.969e-06 9.429e-06 0.00% Amr::init() 1 1.704e-06 2.79e-06 6.512e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.531e-06 4.502e-06 6.384e-06 0.00% Castro::retry_advance_ctu() 10 4.736e-06 5.406e-06 5.977e-06 0.00% Castro::post_init() 1 3.303e-06 4.02e-06 5.724e-06 0.00% Amr::InitializeInit() 1 1.982e-06 2.663e-06 5.702e-06 0.00% Castro::computeInitialDt() 2 3.717e-06 4.374e-06 4.868e-06 0.00% Castro::post_regrid() 1 1.684e-06 2.456e-06 3.73e-06 0.00% Castro::FluxRegFineAdd() 10 1.992e-06 2.22e-06 2.63e-06 0.00% Amr::initialInit() 1 1.15e-06 1.489e-06 1.853e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.033e-06 1.336e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.545 3.546 3.547 100.00% Amr::coarseTimeStep() 10 3.341 3.341 3.341 94.20% Amr::timeStep() 10 3.328 3.329 3.33 93.88% Castro::advance() 10 3.312 3.313 3.313 93.41% Castro::subcycle_advance_ctu() 10 3.225 3.232 3.238 91.28% Castro::do_advance_ctu() 10 3.225 3.232 3.238 91.28% Castro::construct_ctu_hydro_source() 10 2.287 2.357 2.396 67.55% Gravity::make_radial_gravity() 21 0.3483 0.3594 0.3718 10.48% Castro::construct_old_gravity() 10 0.211 0.2187 0.2284 6.44% Gravity::get_old_grav_vector() 10 0.2102 0.2179 0.2278 6.42% Gravity::get_new_grav_vector() 11 0.2218 0.2255 0.2277 6.42% Castro::construct_new_gravity() 10 0.1946 0.1975 0.1994 5.62% Amr::init() 1 0.188 0.1882 0.1882 5.31% FillPatchIterator::Initialize 41 0.1654 0.1782 0.1866 5.26% Castro::initialize_do_advance() 10 0.1506 0.1685 0.1757 4.95% Amr::initialInit() 1 0.1692 0.1694 0.1697 4.78% FillPatchSingleLevel 41 0.1251 0.1319 0.1385 3.90% Amr::InitializeInit() 1 0.06003 0.1001 0.1379 3.89% Amr::defBaseLevel() 1 0.06002 0.1001 0.1379 3.89% Castro::expand_state() 10 0.1087 0.1202 0.1285 3.62% Castro::clean_state() 62 0.115 0.1188 0.1257 3.54% Castro::initData() 1 0.04274 0.08229 0.1186 3.35% Castro::estTimeStep() 21 0.02685 0.0682 0.1136 3.20% Amr::FinalizeInit() 1 0.03177 0.06932 0.1092 3.08% FabArray::ParallelCopy() 41 0.08205 0.0945 0.1036 2.92% Castro::initialize_advance() 10 0.07134 0.07672 0.08338 2.35% FabArray::setVal() 143 0.0652 0.07277 0.08184 2.31% amrex::Copy() 193 0.06511 0.07301 0.08147 2.30% Castro::computeInitialDt() 2 0.002206 0.04003 0.08009 2.26% Castro::do_new_sources() 10 0.06027 0.06628 0.07551 2.13% Castro::computeTemp() 63 0.06823 0.07115 0.07514 2.12% FabArray::ParallelCopy_finish() 41 0.0373 0.05172 0.06558 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04868 0.05104 0.05416 1.53% Castro::reset_internal_energy(Fab) 1008 0.04839 0.05073 0.05381 1.52% Castro::do_old_sources() 10 0.04219 0.04615 0.04988 1.41% FabArray::ParallelCopy_nowait() 41 0.03792 0.04271 0.04468 1.26% Castro::normalize_species() 62 0.04116 0.04218 0.04454 1.26% StateDataPhysBCFunct::() 41 0.03413 0.03728 0.04309 1.21% StateData::FillBoundary(geom) 41 0.03402 0.03718 0.04299 1.21% Castro::construct_new_source() 50 0.02963 0.03199 0.03717 1.05% Castro::construct_new_gravity_source() 10 0.02341 0.02585 0.03089 0.87% Amr::writePlotFile() 2 0.02883 0.02911 0.02937 0.83% Castro::post_init() 1 0.02869 0.0289 0.02929 0.83% Gravity::interpolate_monopole_grav() 21 0.02813 0.02843 0.0289 0.81% VisMF::Write(FabArray) 2 0.01346 0.01465 0.01875 0.53% Castro::post_timestep() 10 0.01561 0.01594 0.01635 0.46% Castro::apply_source_to_state() 20 0.01356 0.01432 0.01469 0.41% FabArray::Saxpy() 20 0.01352 0.01427 0.01464 0.41% FabArray::setDomainBndry() 41 0.009132 0.01179 0.0129 0.36% Castro::check_for_nan() 20 0.01029 0.01126 0.01262 0.36% MultiFab::contains_nan() 20 0.01025 0.01124 0.0126 0.36% Castro::Castro() 1 0.01123 0.01153 0.01238 0.35% Castro::construct_old_source() 50 0.007283 0.01037 0.01115 0.31% Castro::construct_old_gravity_source() 10 0.00723 0.0103 0.01109 0.31% Castro::initMFs() 1 0.006961 0.007378 0.008641 0.24% Castro::computeNewDt() 9 0.008443 0.008521 0.008556 0.24% Castro::enforce_min_density() 62 0.00587 0.006246 0.006867 0.19% AmrLevel::AmrLevel(dm) 1 0.005816 0.00604 0.00666 0.19% StateData::define() 4 0.005791 0.006018 0.006635 0.19% Castro::swap_state_time_levels() 10 0.003823 0.004741 0.005138 0.14% Castro::finalize_advance() 10 0.003046 0.003515 0.004256 0.12% Castro::buildMetrics() 1 0.00177 0.001866 0.002182 0.06% Castro::finalize_do_advance() 10 0.0006413 0.001548 0.001978 0.06% Castro::post_regrid() 1 0.00152 0.001626 0.001882 0.05% Amr::InitAmr() 1 0.0002786 0.0003186 0.0004886 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.244e-05 0.000188 0.0002278 0.01% DistributionMapping::LeastUsedCPUs() 1 7.357e-06 0.0001824 0.0002201 0.01% Castro::enforce_consistent_e() 1 7.928e-05 8.571e-05 9.23e-05 0.00% FabArrayBase::getCPC() 41 6.901e-05 7.924e-05 9.158e-05 0.00% Amr::writeSmallPlotFile() 1 2.724e-05 4.479e-05 6.605e-05 0.00% FabArrayBase::CPC::define() 2 2.182e-05 2.5e-05 3.435e-05 0.00% Castro::enforce_speed_limit() 62 2.491e-05 2.731e-05 3.004e-05 0.00% Gravity::swapTimeLevels() 10 1.075e-05 1.299e-05 1.502e-05 0.00% Gravity::set_mass_offset() 10 9.079e-06 1.042e-05 1.091e-05 0.00% Castro::FluxRegCrseInit 10 7.567e-06 9.118e-06 1.089e-05 0.00% Amr::initSubcycle() 1 8.706e-06 9.636e-06 1.07e-05 0.00% Castro::create_source_corrector() 10 6.683e-06 8.453e-06 9.625e-06 0.00% Castro::retry_advance_ctu() 10 4.736e-06 5.406e-06 5.977e-06 0.00% Castro::FluxRegFineAdd() 10 1.992e-06 2.22e-06 2.63e-06 0.00% DistributionMapping::Distribute() 1 8.84e-07 1.033e-06 1.336e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-19-ga54fee8706c8) finalized