MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-19-ga54fee8706c8) initialized Starting run at 05:22:25 UTC on 2023-04-11. Successfully read inputs file ... Castro git describe: 23.04-6-gc2542242e AMReX git describe: 23.04-19-ga54fee870 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016361032 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.384218003 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.382425432 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.376397254 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.331445861 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360012006 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.328315851 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31551712 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312217151 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313729127 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315141806 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010273329 seconds Ending run at 05:22:29 UTC on 2023-04-11. Run time = 3.621455207 Run time without initialization = 3.436217873 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.621 ... 3.621 ... 3.622 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3407 2.3864 2.4261 66.99% Gravity::make_radial_gravity() 21 0.3192 0.328 0.338 9.33% Castro::do_advance_ctu() 10 0.09434 0.1385 0.1868 5.16% Castro::initData() 1 0.03854 0.07822 0.1159 3.20% Castro::estTimeStep() 21 0.02109 0.06542 0.1089 3.01% amrex::Copy() 193 0.06265 0.07372 0.08156 2.25% FabArray::setVal() 143 0.06538 0.07036 0.0793 2.19% FabArray::ParallelCopy_finish() 41 0.03592 0.04802 0.06372 1.76% Castro::reset_internal_energy(Fab) 1008 0.04857 0.0502 0.05246 1.45% FabArray::ParallelCopy_nowait() 41 0.03769 0.04225 0.04485 1.24% Castro::normalize_species() 62 0.04148 0.04226 0.04311 1.19% StateData::FillBoundary(geom) 41 0.03292 0.03704 0.03947 1.09% FillPatchIterator::Initialize 41 0.02908 0.03466 0.03711 1.02% Gravity::interpolate_monopole_grav() 21 0.02787 0.0283 0.02881 0.80% Castro::construct_new_gravity_source() 10 0.02357 0.02559 0.02816 0.78% Castro::computeTemp() 63 0.01857 0.01971 0.0204 0.56% Castro::initialize_do_advance() 10 0.01312 0.01734 0.01934 0.53% VisMF::Write(FabArray) 2 0.01323 0.01396 0.01698 0.47% FabArray::Saxpy() 20 0.01357 0.01421 0.0147 0.41% Castro::initialize_advance() 10 0.009768 0.01197 0.01459 0.40% FabArray::setDomainBndry() 41 0.008765 0.01175 0.01296 0.36% MultiFab::contains_nan() 20 0.01112 0.01193 0.01243 0.34% Amr::writePlotFile() 2 0.006914 0.01014 0.01127 0.31% Castro::construct_old_gravity_source() 10 0.007697 0.01018 0.01089 0.30% Castro::initMFs() 1 0.006909 0.00724 0.008981 0.25% StateData::define() 4 0.005731 0.005863 0.006554 0.18% Castro::enforce_min_density() 62 0.005907 0.006125 0.00636 0.18% Castro::construct_new_source() 50 0.005906 0.0062 0.006311 0.17% main() 1 0.005345 0.005605 0.005826 0.16% Castro::swap_state_time_levels() 10 0.003503 0.004829 0.005311 0.15% Gravity::get_new_grav_vector() 11 0.003031 0.003733 0.00409 0.11% Amr::coarseTimeStep() 10 0.0014 0.002532 0.003346 0.09% Gravity::get_old_grav_vector() 10 0.001734 0.002486 0.002781 0.08% Castro::finalize_do_advance() 10 0.0005397 0.001638 0.002131 0.06% Castro::buildMetrics() 1 0.001638 0.001676 0.001885 0.05% Castro::expand_state() 10 0.0005874 0.0008712 0.00102 0.03% Amr::InitAmr() 1 0.0002754 0.0003083 0.0004794 0.01% Amr::timeStep() 10 0.0001906 0.000247 0.0004073 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002798 0.0002933 0.0003226 0.01% DistributionMapping::LeastUsedCPUs() 1 7.765e-06 0.0001817 0.0002089 0.01% Castro::clean_state() 62 0.0001409 0.0001569 0.0001696 0.00% Castro::finalize_advance() 10 8.389e-05 0.0001041 0.0001243 0.00% Castro::enforce_consistent_e() 1 8.137e-05 8.988e-05 0.0001037 0.00% StateDataPhysBCFunct::() 41 8.68e-05 9.382e-05 9.992e-05 0.00% Castro::Castro() 1 5.278e-05 6.908e-05 9.708e-05 0.00% FabArray::ParallelCopy() 41 6.307e-05 7.586e-05 9.125e-05 0.00% Castro::do_old_sources() 10 5.764e-05 6.654e-05 7.833e-05 0.00% Castro::construct_old_source() 50 5.15e-05 6.638e-05 7.83e-05 0.00% FillPatchSingleLevel 41 6.359e-05 7.238e-05 7.666e-05 0.00% Amr::FinalizeInit() 1 3.967e-06 1.32e-05 7.195e-05 0.00% Castro::do_new_sources() 10 5.796e-05 6.432e-05 6.725e-05 0.00% FabArrayBase::getCPC() 41 4.092e-05 5.135e-05 6.592e-05 0.00% Castro::subcycle_advance_ctu() 10 4.012e-05 4.772e-05 6.038e-05 0.00% Amr::writeSmallPlotFile() 1 2.517e-05 3.91e-05 5.788e-05 0.00% Castro::advance() 10 3.811e-05 4.185e-05 5.098e-05 0.00% Castro::apply_source_to_state() 20 3.995e-05 4.495e-05 4.932e-05 0.00% Amr::defBaseLevel() 1 1.796e-05 3.417e-05 4.912e-05 0.00% Castro::construct_old_gravity() 10 3.805e-05 4.086e-05 4.6e-05 0.00% Castro::construct_new_gravity() 10 3.812e-05 4.183e-05 4.533e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.8e-05 2.356e-05 3.174e-05 0.00% FabArrayBase::CPC::define() 2 2.077e-05 2.545e-05 3.122e-05 0.00% Castro::enforce_speed_limit() 62 2.252e-05 2.571e-05 2.788e-05 0.00% Castro::check_for_nan() 20 1.964e-05 2.199e-05 2.566e-05 0.00% Castro::post_timestep() 10 1.44e-05 1.586e-05 1.752e-05 0.00% Gravity::swapTimeLevels() 10 1.121e-05 1.332e-05 1.602e-05 0.00% Castro::FluxRegCrseInit 10 7.837e-06 9.255e-06 1.239e-05 0.00% Gravity::set_mass_offset() 10 9.703e-06 1.055e-05 1.226e-05 0.00% Amr::initSubcycle() 1 8.734e-06 9.491e-06 1.06e-05 0.00% Castro::create_source_corrector() 10 7.689e-06 8.829e-06 9.499e-06 0.00% Castro::computeNewDt() 9 7.603e-06 8.282e-06 9.054e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.4e-06 4.356e-06 6.97e-06 0.00% Amr::init() 1 1.745e-06 2.811e-06 6.768e-06 0.00% Castro::retry_advance_ctu() 10 4.865e-06 5.499e-06 6.013e-06 0.00% Amr::InitializeInit() 1 1.886e-06 2.762e-06 5.46e-06 0.00% Castro::computeInitialDt() 2 4.155e-06 4.88e-06 5.301e-06 0.00% Castro::post_init() 1 3.196e-06 4.082e-06 5.245e-06 0.00% Castro::post_regrid() 1 1.901e-06 2.753e-06 4.192e-06 0.00% Castro::FluxRegFineAdd() 10 1.874e-06 2.394e-06 2.734e-06 0.00% Amr::initialInit() 1 1.208e-06 1.856e-06 2.506e-06 0.00% DistributionMapping::Distribute() 1 8.93e-07 1.015e-06 1.316e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.621 3.621 3.622 100.00% Amr::coarseTimeStep() 10 3.42 3.42 3.42 94.44% Amr::timeStep() 10 3.407 3.408 3.409 94.13% Castro::advance() 10 3.391 3.391 3.392 93.66% Castro::subcycle_advance_ctu() 10 3.306 3.313 3.317 91.60% Castro::do_advance_ctu() 10 3.306 3.313 3.317 91.60% Castro::construct_ctu_hydro_source() 10 2.341 2.386 2.426 66.99% Gravity::make_radial_gravity() 21 0.3367 0.3452 0.3524 9.73% Gravity::get_new_grav_vector() 11 0.2191 0.2213 0.223 6.16% Castro::construct_old_gravity() 10 0.203 0.2083 0.2148 5.93% Gravity::get_old_grav_vector() 10 0.2022 0.2075 0.2142 5.91% Castro::construct_new_gravity() 10 0.1927 0.1946 0.1956 5.40% Amr::init() 1 0.1846 0.1848 0.1848 5.10% FillPatchIterator::Initialize 41 0.1663 0.174 0.1819 5.02% Castro::initialize_do_advance() 10 0.1528 0.1639 0.1715 4.74% Amr::initialInit() 1 0.1679 0.1681 0.1682 4.65% FillPatchSingleLevel 41 0.118 0.1276 0.1382 3.82% Amr::InitializeInit() 1 0.06025 0.1001 0.1378 3.81% Amr::defBaseLevel() 1 0.06025 0.1001 0.1378 3.81% Castro::expand_state() 10 0.1081 0.1165 0.1244 3.43% Castro::clean_state() 62 0.1144 0.1178 0.1212 3.35% Castro::initData() 1 0.04276 0.08233 0.1199 3.31% Castro::estTimeStep() 21 0.02109 0.06542 0.1089 3.01% Amr::FinalizeInit() 1 0.03012 0.06799 0.1079 2.98% FabArray::ParallelCopy() 41 0.07886 0.09042 0.1016 2.80% Castro::initialize_advance() 10 0.07075 0.07514 0.08166 2.25% amrex::Copy() 193 0.06265 0.07372 0.08156 2.25% Castro::computeInitialDt() 2 0.002206 0.03991 0.07978 2.20% FabArray::setVal() 143 0.06538 0.07036 0.0793 2.19% Castro::computeTemp() 63 0.06743 0.07021 0.07318 2.02% Castro::do_new_sources() 10 0.06044 0.06497 0.07117 1.97% FabArray::ParallelCopy_finish() 41 0.03592 0.04802 0.06372 1.76% Castro::reset_internal_energy(MultiFab) 63 0.04886 0.0505 0.05278 1.46% Castro::reset_internal_energy(Fab) 1008 0.04857 0.0502 0.05246 1.45% Castro::do_old_sources() 10 0.04453 0.04569 0.04885 1.35% FabArray::ParallelCopy_nowait() 41 0.03776 0.04233 0.04494 1.24% Castro::normalize_species() 62 0.04148 0.04226 0.04311 1.19% StateDataPhysBCFunct::() 41 0.03301 0.03713 0.03956 1.09% StateData::FillBoundary(geom) 41 0.03292 0.03704 0.03947 1.09% Castro::construct_new_source() 50 0.02973 0.03179 0.03447 0.95% Gravity::interpolate_monopole_grav() 21 0.02787 0.0283 0.02881 0.80% Castro::construct_new_gravity_source() 10 0.02357 0.02559 0.02816 0.78% Castro::post_init() 1 0.0275 0.02768 0.02788 0.77% Amr::writePlotFile() 2 0.02686 0.02704 0.02725 0.75% VisMF::Write(FabArray) 2 0.01323 0.01396 0.01698 0.47% Castro::post_timestep() 10 0.01562 0.01613 0.01676 0.46% Castro::apply_source_to_state() 20 0.01361 0.01425 0.01474 0.41% FabArray::Saxpy() 20 0.01357 0.01421 0.0147 0.41% FabArray::setDomainBndry() 41 0.008765 0.01175 0.01296 0.36% Castro::Castro() 1 0.01141 0.01164 0.0125 0.35% Castro::check_for_nan() 20 0.01114 0.01195 0.01245 0.34% MultiFab::contains_nan() 20 0.01112 0.01193 0.01243 0.34% Castro::construct_old_source() 50 0.007749 0.01025 0.01096 0.30% Castro::construct_old_gravity_source() 10 0.007697 0.01018 0.01089 0.30% Castro::initMFs() 1 0.006909 0.00724 0.008981 0.25% Castro::computeNewDt() 9 0.008575 0.008584 0.008594 0.24% AmrLevel::AmrLevel(dm) 1 0.005754 0.005887 0.006577 0.18% StateData::define() 4 0.005731 0.005863 0.006554 0.18% Castro::enforce_min_density() 62 0.005907 0.006125 0.00636 0.18% Castro::swap_state_time_levels() 10 0.003503 0.004829 0.005311 0.15% Castro::finalize_advance() 10 0.002928 0.003384 0.003942 0.11% Castro::finalize_do_advance() 10 0.0005397 0.001638 0.002131 0.06% Castro::buildMetrics() 1 0.001758 0.001807 0.002044 0.06% Castro::post_regrid() 1 0.001557 0.00164 0.001846 0.05% Amr::InitAmr() 1 0.0002844 0.0003178 0.00049 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.291e-05 0.0001871 0.000216 0.01% DistributionMapping::LeastUsedCPUs() 1 7.765e-06 0.0001817 0.0002089 0.01% Castro::enforce_consistent_e() 1 8.137e-05 8.988e-05 0.0001037 0.00% FabArrayBase::getCPC() 41 6.542e-05 7.68e-05 9.371e-05 0.00% Amr::writeSmallPlotFile() 1 2.517e-05 3.91e-05 5.788e-05 0.00% FabArrayBase::CPC::define() 2 2.077e-05 2.545e-05 3.122e-05 0.00% Castro::enforce_speed_limit() 62 2.252e-05 2.571e-05 2.788e-05 0.00% Gravity::swapTimeLevels() 10 1.121e-05 1.332e-05 1.602e-05 0.00% Castro::FluxRegCrseInit 10 7.837e-06 9.255e-06 1.239e-05 0.00% Gravity::set_mass_offset() 10 9.703e-06 1.055e-05 1.226e-05 0.00% Amr::initSubcycle() 1 8.734e-06 9.491e-06 1.06e-05 0.00% Castro::create_source_corrector() 10 7.689e-06 8.829e-06 9.499e-06 0.00% Castro::retry_advance_ctu() 10 4.865e-06 5.499e-06 6.013e-06 0.00% Castro::FluxRegFineAdd() 10 1.874e-06 2.394e-06 2.734e-06 0.00% DistributionMapping::Distribute() 1 8.93e-07 1.015e-06 1.316e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-19-ga54fee8706c8) finalized