MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-24-g27ef4ea56945) initialized Starting run at 16:56:42 UTC on 2023-04-13. Successfully read inputs file ... Castro git describe: 23.04-8-gd15af1530 AMReX git describe: 23.04-24-g27ef4ea56 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016472059 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.377365892 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.359254684 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33158554 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328486898 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360811292 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.334753066 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314930559 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.314310222 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.319104255 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313448797 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010487453 seconds Ending run at 16:56:45 UTC on 2023-04-13. Run time = 3.576467567 Run time without initialization = 3.372140029 Average number of zones advanced per microsecond: 0.777 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.575 ... 3.576 ... 3.577 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3278 2.3788 2.4415 68.26% Gravity::make_radial_gravity() 21 0.3187 0.3295 0.34 9.51% Castro::do_advance_ctu() 10 0.02454 0.08948 0.1439 4.02% Castro::initData() 1 0.06512 0.0881 0.1331 3.72% Castro::estTimeStep() 21 0.02191 0.07399 0.106 2.96% FabArray::setVal() 143 0.05824 0.06727 0.07863 2.20% FabArray::ParallelCopy_finish() 41 0.03743 0.04772 0.07795 2.18% amrex::Copy() 193 0.06062 0.0702 0.07771 2.17% Castro::reset_internal_energy(Fab) 1008 0.04949 0.05089 0.05286 1.48% Castro::normalize_species() 62 0.0415 0.04247 0.04406 1.23% FabArray::ParallelCopy_nowait() 41 0.0386 0.04165 0.04271 1.19% StateData::FillBoundary(geom) 41 0.03437 0.0361 0.03861 1.08% FillPatchIterator::Initialize 41 0.02971 0.03341 0.03557 0.99% Castro::construct_new_gravity_source() 10 0.02324 0.02593 0.02929 0.82% Gravity::interpolate_monopole_grav() 21 0.0282 0.02847 0.02883 0.81% Castro::computeTemp() 63 0.01985 0.02043 0.02105 0.59% Castro::initialize_do_advance() 10 0.01277 0.01719 0.01924 0.54% VisMF::Write(FabArray) 2 0.01376 0.01474 0.01761 0.49% FabArray::Saxpy() 20 0.01231 0.01395 0.01467 0.41% Castro::initialize_advance() 10 0.004101 0.01009 0.01338 0.37% FabArray::setDomainBndry() 41 0.008717 0.01101 0.01228 0.34% MultiFab::contains_nan() 20 0.01016 0.01088 0.01195 0.33% Amr::writePlotFile() 2 0.006922 0.009812 0.01091 0.31% Castro::construct_old_gravity_source() 10 0.00753 0.01029 0.01087 0.30% Castro::initMFs() 1 0.006795 0.007956 0.01021 0.29% StateData::define() 4 0.005642 0.007107 0.009199 0.26% main() 1 0.005309 0.006488 0.006857 0.19% Castro::construct_new_source() 50 0.005735 0.006236 0.006557 0.18% Castro::enforce_min_density() 62 0.005867 0.006173 0.006372 0.18% Gravity::get_new_grav_vector() 11 0.003043 0.003912 0.00549 0.15% Castro::swap_state_time_levels() 10 0.00336 0.004639 0.005364 0.15% Amr::coarseTimeStep() 10 0.001434 0.002035 0.00277 0.08% Gravity::get_old_grav_vector() 10 0.001831 0.002376 0.002746 0.08% Castro::buildMetrics() 1 0.0016 0.001882 0.002412 0.07% Castro::finalize_do_advance() 10 0.0006527 0.001517 0.001881 0.05% Castro::expand_state() 10 0.0007506 0.0008653 0.001006 0.03% Amr::InitAmr() 1 0.0003042 0.0004364 0.0006693 0.02% Amr::timeStep() 10 0.0001814 0.0002458 0.0004674 0.01% DistributionMapping::LeastUsedCPUs() 1 7.115e-06 0.0002796 0.0004278 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002826 0.0003027 0.0003421 0.01% Castro::clean_state() 62 0.0001333 0.0001485 0.0001651 0.00% Castro::enforce_consistent_e() 1 7.852e-05 0.0001038 0.0001474 0.00% Castro::finalize_advance() 10 8.758e-05 0.0001051 0.0001238 0.00% StateDataPhysBCFunct::() 41 7.832e-05 8.93e-05 0.0001081 0.00% FabArrayBase::getCPC() 41 4.06e-05 5.851e-05 8.728e-05 0.00% FabArray::ParallelCopy() 41 6.423e-05 7.076e-05 8.131e-05 0.00% Castro::do_old_sources() 10 5.555e-05 6.284e-05 7.883e-05 0.00% Castro::do_new_sources() 10 5.354e-05 6.511e-05 7.823e-05 0.00% Castro::construct_old_source() 50 4.91e-05 6.366e-05 7.405e-05 0.00% FillPatchSingleLevel 41 6.577e-05 6.933e-05 7.34e-05 0.00% Amr::writeSmallPlotFile() 1 2.532e-05 4.24e-05 6.803e-05 0.00% Amr::FinalizeInit() 1 3.937e-06 1.276e-05 6.65e-05 0.00% Castro::Castro() 1 4.724e-05 5.985e-05 6.614e-05 0.00% Castro::advance() 10 3.339e-05 3.978e-05 5.404e-05 0.00% Castro::subcycle_advance_ctu() 10 3.368e-05 4.245e-05 5.295e-05 0.00% Castro::apply_source_to_state() 20 3.485e-05 4.384e-05 5.12e-05 0.00% Castro::construct_new_gravity() 10 3.091e-05 3.838e-05 4.47e-05 0.00% Castro::construct_old_gravity() 10 3.572e-05 3.987e-05 4.281e-05 0.00% Castro::enforce_speed_limit() 62 2.465e-05 2.872e-05 3.371e-05 0.00% Amr::defBaseLevel() 1 1.813e-05 2.295e-05 3.352e-05 0.00% FabArrayBase::CPC::define() 2 2.222e-05 2.52e-05 2.814e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.563e-05 2.047e-05 2.623e-05 0.00% Castro::check_for_nan() 20 1.969e-05 2.286e-05 2.48e-05 0.00% Castro::post_timestep() 10 1.313e-05 1.573e-05 1.746e-05 0.00% Amr::initSubcycle() 1 9.468e-06 1.291e-05 1.672e-05 0.00% Gravity::swapTimeLevels() 10 9.57e-06 1.097e-05 1.229e-05 0.00% Gravity::set_mass_offset() 10 9.492e-06 1.025e-05 1.126e-05 0.00% Castro::create_source_corrector() 10 6.654e-06 8.595e-06 1.035e-05 0.00% Castro::FluxRegCrseInit 10 7.134e-06 9.018e-06 1.015e-05 0.00% Castro::computeNewDt() 9 7.17e-06 8.333e-06 9.891e-06 0.00% Amr::InitializeInit() 1 2.164e-06 3.161e-06 7.018e-06 0.00% Castro::retry_advance_ctu() 10 4.402e-06 4.931e-06 6.363e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.796e-06 4.81e-06 6.313e-06 0.00% Castro::post_init() 1 2.761e-06 4.076e-06 5.422e-06 0.00% Castro::computeInitialDt() 2 3.354e-06 4.172e-06 4.985e-06 0.00% Castro::post_regrid() 1 1.809e-06 2.751e-06 3.699e-06 0.00% Castro::FluxRegFineAdd() 10 1.982e-06 2.391e-06 3.151e-06 0.00% Amr::init() 1 2.088e-06 2.368e-06 2.829e-06 0.00% Amr::initialInit() 1 1.406e-06 1.589e-06 1.849e-06 0.00% DistributionMapping::Distribute() 1 9.68e-07 1.186e-06 1.469e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.575 3.576 3.576 100.00% Amr::coarseTimeStep() 10 3.355 3.355 3.355 93.80% Amr::timeStep() 10 3.342 3.343 3.344 93.49% Castro::advance() 10 3.326 3.327 3.327 93.04% Castro::subcycle_advance_ctu() 10 3.246 3.253 3.265 91.29% Castro::do_advance_ctu() 10 3.246 3.253 3.265 91.29% Castro::construct_ctu_hydro_source() 10 2.328 2.379 2.441 68.26% Gravity::make_radial_gravity() 21 0.3347 0.3456 0.3534 9.88% Gravity::get_new_grav_vector() 11 0.2225 0.2245 0.227 6.35% Castro::construct_old_gravity() 10 0.1974 0.2038 0.21 5.87% Gravity::get_old_grav_vector() 10 0.1967 0.2031 0.2094 5.85% Amr::init() 1 0.2034 0.2037 0.2039 5.70% Castro::construct_new_gravity() 10 0.1958 0.1971 0.1983 5.55% FillPatchIterator::Initialize 41 0.1574 0.1702 0.1922 5.37% Amr::initialInit() 1 0.1868 0.1872 0.1877 5.25% Castro::initialize_do_advance() 10 0.1544 0.1648 0.1709 4.78% Amr::InitializeInit() 1 0.08523 0.1113 0.1555 4.35% Amr::defBaseLevel() 1 0.08523 0.1113 0.1555 4.35% FillPatchSingleLevel 41 0.1152 0.1258 0.1538 4.30% Castro::initData() 1 0.06888 0.09236 0.1373 3.84% Castro::expand_state() 10 0.1043 0.1169 0.1287 3.60% Castro::clean_state() 62 0.1165 0.1193 0.122 3.41% FabArray::ParallelCopy() 41 0.0798 0.08952 0.1167 3.26% Castro::estTimeStep() 21 0.02191 0.07399 0.106 2.96% Amr::FinalizeInit() 1 0.03216 0.07589 0.1019 2.85% FabArray::setVal() 143 0.05824 0.06727 0.07863 2.20% FabArray::ParallelCopy_finish() 41 0.03743 0.04772 0.07795 2.18% amrex::Copy() 193 0.06062 0.0702 0.07771 2.17% Castro::initialize_advance() 10 0.05751 0.07047 0.07738 2.16% Castro::do_new_sources() 10 0.06076 0.06645 0.07472 2.09% Castro::computeTemp() 63 0.06963 0.07163 0.07421 2.07% Castro::computeInitialDt() 2 0.002349 0.04642 0.07265 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04979 0.0512 0.05316 1.49% Castro::reset_internal_energy(Fab) 1008 0.04949 0.05089 0.05286 1.48% Castro::do_old_sources() 10 0.04021 0.04565 0.0471 1.32% Castro::normalize_species() 62 0.0415 0.04247 0.04406 1.23% FabArray::ParallelCopy_nowait() 41 0.03871 0.04173 0.04277 1.20% StateDataPhysBCFunct::() 41 0.03446 0.03619 0.03869 1.08% StateData::FillBoundary(geom) 41 0.03437 0.0361 0.03861 1.08% Castro::construct_new_source() 50 0.02946 0.03216 0.03581 1.00% Castro::construct_new_gravity_source() 10 0.02324 0.02593 0.02929 0.82% Castro::post_init() 1 0.02749 0.02864 0.02913 0.81% Gravity::interpolate_monopole_grav() 21 0.0282 0.02847 0.02883 0.81% Amr::writePlotFile() 2 0.02675 0.0271 0.02744 0.77% VisMF::Write(FabArray) 2 0.01376 0.01474 0.01761 0.49% Castro::post_timestep() 10 0.01571 0.01604 0.01646 0.46% Castro::apply_source_to_state() 20 0.01236 0.01399 0.01472 0.41% FabArray::Saxpy() 20 0.01231 0.01395 0.01467 0.41% Castro::Castro() 1 0.01009 0.01151 0.01447 0.40% FabArray::setDomainBndry() 41 0.008717 0.01101 0.01228 0.34% Castro::check_for_nan() 20 0.01019 0.0109 0.01197 0.33% MultiFab::contains_nan() 20 0.01016 0.01088 0.01195 0.33% Castro::construct_old_source() 50 0.007579 0.01035 0.01094 0.31% Castro::construct_old_gravity_source() 10 0.00753 0.01029 0.01087 0.30% Castro::initMFs() 1 0.006795 0.007956 0.01021 0.29% AmrLevel::AmrLevel(dm) 1 0.005661 0.007128 0.009223 0.26% StateData::define() 4 0.005642 0.007107 0.009199 0.26% Castro::computeNewDt() 9 0.008562 0.008579 0.008589 0.24% Castro::enforce_min_density() 62 0.005867 0.006173 0.006372 0.18% Castro::swap_state_time_levels() 10 0.00336 0.004639 0.005364 0.15% Castro::finalize_advance() 10 0.003023 0.003411 0.003828 0.11% Castro::post_regrid() 1 0.001596 0.002029 0.003081 0.09% Castro::buildMetrics() 1 0.001721 0.00203 0.002639 0.07% Castro::finalize_do_advance() 10 0.0006527 0.001517 0.001881 0.05% Amr::InitAmr() 1 0.000314 0.0004493 0.0006852 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.21e-05 0.0002856 0.0004354 0.01% DistributionMapping::LeastUsedCPUs() 1 7.115e-06 0.0002796 0.0004278 0.01% Castro::enforce_consistent_e() 1 7.852e-05 0.0001038 0.0001474 0.00% FabArrayBase::getCPC() 41 6.312e-05 8.371e-05 0.0001154 0.00% Amr::writeSmallPlotFile() 1 2.532e-05 4.24e-05 6.803e-05 0.00% Castro::enforce_speed_limit() 62 2.465e-05 2.872e-05 3.371e-05 0.00% FabArrayBase::CPC::define() 2 2.222e-05 2.52e-05 2.814e-05 0.00% Amr::initSubcycle() 1 9.468e-06 1.291e-05 1.672e-05 0.00% Gravity::swapTimeLevels() 10 9.57e-06 1.097e-05 1.229e-05 0.00% Gravity::set_mass_offset() 10 9.492e-06 1.025e-05 1.126e-05 0.00% Castro::create_source_corrector() 10 6.654e-06 8.595e-06 1.035e-05 0.00% Castro::FluxRegCrseInit 10 7.134e-06 9.018e-06 1.015e-05 0.00% Castro::retry_advance_ctu() 10 4.402e-06 4.931e-06 6.363e-06 0.00% Castro::FluxRegFineAdd() 10 1.982e-06 2.391e-06 3.151e-06 0.00% DistributionMapping::Distribute() 1 9.68e-07 1.186e-06 1.469e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 37 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-24-g27ef4ea56945) finalized