MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-24-g27ef4ea56945) initialized Starting run at 18:53:53 UTC on 2023-04-13. Successfully read inputs file ... Castro git describe: 23.04-12-g099efffb3 AMReX git describe: 23.04-24-g27ef4ea56 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016522747 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.373383279 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.383303159 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.346514643 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.386809271 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.372998336 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.329978844 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314009514 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315100029 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313954913 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.313400909 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010206668 seconds Ending run at 18:53:56 UTC on 2023-04-13. Run time = 3.661403813 Run time without initialization = 3.466672959 Average number of zones advanced per microsecond: 0.756 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.66 ... 3.661 ... 3.661 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3280 2.3963 2.4548 67.04% Gravity::make_radial_gravity() 21 0.3251 0.3365 0.3489 9.53% Castro::do_advance_ctu() 10 0.09894 0.1586 0.2308 6.30% Castro::initData() 1 0.03984 0.08266 0.1229 3.36% Castro::estTimeStep() 21 0.02281 0.06907 0.1159 3.16% amrex::Copy() 193 0.06125 0.07195 0.07837 2.14% FabArray::setVal() 143 0.06261 0.06738 0.07644 2.09% FabArray::ParallelCopy_finish() 41 0.0345 0.04763 0.07641 2.09% Castro::reset_internal_energy(Fab) 1008 0.04863 0.05051 0.05201 1.42% FabArray::ParallelCopy_nowait() 41 0.03704 0.04245 0.04464 1.22% Castro::normalize_species() 62 0.04155 0.04228 0.04338 1.18% StateData::FillBoundary(geom) 41 0.03225 0.03621 0.04017 1.10% FillPatchIterator::Initialize 41 0.02896 0.03482 0.03787 1.03% Gravity::interpolate_monopole_grav() 21 0.02822 0.02836 0.02874 0.79% Castro::construct_new_gravity_source() 10 0.02358 0.02547 0.02825 0.77% Castro::computeTemp() 63 0.01877 0.02023 0.0211 0.58% Castro::initialize_do_advance() 10 0.01249 0.01691 0.0183 0.50% VisMF::Write(FabArray) 2 0.01369 0.01437 0.01728 0.47% FabArray::Saxpy() 20 0.01235 0.0138 0.01428 0.39% Castro::initialize_advance() 10 0.008098 0.01087 0.01426 0.39% FabArray::setDomainBndry() 41 0.00885 0.01166 0.01275 0.35% MultiFab::contains_nan() 20 0.01016 0.01122 0.01187 0.32% Castro::construct_old_gravity_source() 10 0.007389 0.01006 0.01094 0.30% Amr::writePlotFile() 2 0.006845 0.009799 0.01066 0.29% Castro::initMFs() 1 0.007147 0.007723 0.008538 0.23% StateData::define() 4 0.005919 0.006384 0.0074 0.20% main() 1 0.005262 0.005954 0.006438 0.18% Castro::construct_new_source() 50 0.005691 0.006203 0.006399 0.17% Castro::enforce_min_density() 62 0.005676 0.005928 0.006205 0.17% Castro::swap_state_time_levels() 10 0.003327 0.004547 0.00531 0.15% Gravity::get_new_grav_vector() 11 0.003088 0.003717 0.004113 0.11% Gravity::get_old_grav_vector() 10 0.001705 0.002401 0.002738 0.07% Amr::coarseTimeStep() 10 0.001545 0.002125 0.002716 0.07% Castro::buildMetrics() 1 0.001687 0.001794 0.001909 0.05% Castro::finalize_do_advance() 10 0.0006416 0.001516 0.001801 0.05% Castro::expand_state() 10 0.0007444 0.0008585 0.0009787 0.03% Amr::InitAmr() 1 0.0002992 0.0003846 0.0006801 0.02% DistributionMapping::LeastUsedCPUs() 1 9.065e-06 0.0003388 0.0004325 0.01% Amr::timeStep() 10 0.0001835 0.000233 0.0003764 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002757 0.0002939 0.0003364 0.01% Castro::clean_state() 62 0.0001339 0.0001601 0.0001911 0.01% Castro::finalize_advance() 10 8.543e-05 0.000108 0.0001257 0.00% Castro::enforce_consistent_e() 1 8.365e-05 8.956e-05 0.0001016 0.00% StateDataPhysBCFunct::() 41 7.779e-05 9.529e-05 0.0001005 0.00% Castro::Castro() 1 6.036e-05 7.018e-05 9.754e-05 0.00% Amr::FinalizeInit() 1 3.806e-06 1.601e-05 9.647e-05 0.00% Castro::construct_old_source() 50 4.585e-05 6.955e-05 8.196e-05 0.00% FillPatchSingleLevel 41 5.532e-05 6.692e-05 8.087e-05 0.00% FabArray::ParallelCopy() 41 5.913e-05 7.111e-05 7.939e-05 0.00% Castro::do_new_sources() 10 5.616e-05 6.627e-05 7.773e-05 0.00% Castro::do_old_sources() 10 5.038e-05 6.343e-05 7.42e-05 0.00% Amr::writeSmallPlotFile() 1 2.479e-05 5.468e-05 7.024e-05 0.00% FabArrayBase::getCPC() 41 4.803e-05 5.811e-05 6.96e-05 0.00% Castro::apply_source_to_state() 20 3.232e-05 4.421e-05 4.832e-05 0.00% Castro::subcycle_advance_ctu() 10 3.457e-05 4.177e-05 4.735e-05 0.00% Castro::construct_old_gravity() 10 3.252e-05 3.971e-05 4.672e-05 0.00% Castro::advance() 10 3.066e-05 3.833e-05 4.473e-05 0.00% Castro::construct_new_gravity() 10 3.364e-05 3.973e-05 4.385e-05 0.00% FabArrayBase::CPC::define() 2 2.076e-05 2.78e-05 3.779e-05 0.00% Amr::defBaseLevel() 1 1.792e-05 2.36e-05 3.438e-05 0.00% Castro::enforce_speed_limit() 62 2.415e-05 2.917e-05 3.245e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.977e-05 2.49e-05 3.069e-05 0.00% Castro::check_for_nan() 20 2.16e-05 2.382e-05 2.581e-05 0.00% Castro::post_timestep() 10 1.373e-05 1.562e-05 1.79e-05 0.00% Amr::initSubcycle() 1 8.907e-06 1.128e-05 1.549e-05 0.00% Gravity::swapTimeLevels() 10 9.514e-06 1.114e-05 1.245e-05 0.00% Gravity::set_mass_offset() 10 8.082e-06 1.059e-05 1.175e-05 0.00% Castro::create_source_corrector() 10 7.47e-06 9.139e-06 1.067e-05 0.00% Castro::FluxRegCrseInit 10 6.966e-06 9.242e-06 1.026e-05 0.00% Castro::computeNewDt() 9 7.916e-06 8.593e-06 9.25e-06 0.00% Amr::initialInit() 1 1.157e-06 2.589e-06 9.072e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.779e-06 5.355e-06 8.055e-06 0.00% Castro::retry_advance_ctu() 10 4.254e-06 5.124e-06 6.553e-06 0.00% Amr::InitializeInit() 1 1.963e-06 2.862e-06 6.54e-06 0.00% Castro::computeInitialDt() 2 3e-06 4.131e-06 5.137e-06 0.00% Castro::post_regrid() 1 1.715e-06 3.101e-06 4.955e-06 0.00% Castro::post_init() 1 2.796e-06 3.541e-06 4.357e-06 0.00% Castro::FluxRegFineAdd() 10 2.082e-06 2.347e-06 2.692e-06 0.00% Amr::init() 1 1.774e-06 2.14e-06 2.573e-06 0.00% DistributionMapping::Distribute() 1 9.86e-07 1.106e-06 1.361e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.66 3.661 3.661 100.00% Amr::coarseTimeStep() 10 3.45 3.45 3.45 94.23% Amr::timeStep() 10 3.438 3.438 3.439 93.92% Castro::advance() 10 3.421 3.422 3.422 93.47% Castro::subcycle_advance_ctu() 10 3.34 3.347 3.351 91.51% Castro::do_advance_ctu() 10 3.34 3.347 3.35 91.51% Castro::construct_ctu_hydro_source() 10 2.328 2.396 2.455 67.04% Gravity::make_radial_gravity() 21 0.3413 0.3532 0.3653 9.98% Castro::construct_old_gravity() 10 0.203 0.2132 0.2247 6.14% Gravity::get_new_grav_vector() 11 0.2209 0.2232 0.2245 6.13% Gravity::get_old_grav_vector() 10 0.2022 0.2125 0.224 6.12% Castro::construct_new_gravity() 10 0.1938 0.1954 0.1961 5.36% Amr::init() 1 0.1938 0.1942 0.1943 5.31% FillPatchIterator::Initialize 41 0.1592 0.1731 0.1879 5.13% Amr::initialInit() 1 0.1772 0.1776 0.178 4.86% Castro::initialize_do_advance() 10 0.1529 0.1662 0.1736 4.74% FillPatchSingleLevel 41 0.1185 0.1266 0.1501 4.10% Amr::InitializeInit() 1 0.06155 0.1052 0.1461 3.99% Amr::defBaseLevel() 1 0.06155 0.1052 0.1461 3.99% Castro::initData() 1 0.04403 0.08674 0.1267 3.46% Castro::expand_state() 10 0.1049 0.1184 0.1259 3.44% Castro::clean_state() 62 0.1154 0.1184 0.1209 3.30% Castro::estTimeStep() 21 0.02281 0.06907 0.1159 3.16% Amr::FinalizeInit() 1 0.03161 0.07233 0.1158 3.16% FabArray::ParallelCopy() 41 0.07897 0.09024 0.1136 3.10% Castro::computeInitialDt() 2 0.002195 0.04302 0.08652 2.36% Castro::initialize_advance() 10 0.06713 0.07105 0.0789 2.15% amrex::Copy() 193 0.06125 0.07195 0.07837 2.14% FabArray::setVal() 143 0.06261 0.06738 0.07644 2.09% FabArray::ParallelCopy_finish() 41 0.0345 0.04763 0.07641 2.09% Castro::computeTemp() 63 0.06768 0.07104 0.07269 1.99% Castro::do_new_sources() 10 0.06122 0.06548 0.07172 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04891 0.05081 0.05234 1.43% Castro::reset_internal_energy(Fab) 1008 0.04863 0.05051 0.05201 1.42% Castro::do_old_sources() 10 0.04017 0.04496 0.04625 1.26% FabArray::ParallelCopy_nowait() 41 0.03714 0.04254 0.04471 1.22% Castro::normalize_species() 62 0.04155 0.04228 0.04338 1.18% StateDataPhysBCFunct::() 41 0.03233 0.03631 0.04026 1.10% StateData::FillBoundary(geom) 41 0.03225 0.03621 0.04017 1.10% Castro::construct_new_source() 50 0.02987 0.03168 0.03438 0.94% Castro::post_init() 1 0.0286 0.02883 0.02908 0.79% Gravity::interpolate_monopole_grav() 21 0.02822 0.02836 0.02874 0.79% Castro::construct_new_gravity_source() 10 0.02358 0.02547 0.02825 0.77% Amr::writePlotFile() 2 0.02655 0.02689 0.02717 0.74% VisMF::Write(FabArray) 2 0.01369 0.01437 0.01728 0.47% Castro::post_timestep() 10 0.01569 0.01609 0.01663 0.45% Castro::apply_source_to_state() 20 0.0124 0.01385 0.01432 0.39% FabArray::Saxpy() 20 0.01235 0.0138 0.01428 0.39% FabArray::setDomainBndry() 41 0.00885 0.01166 0.01275 0.35% Castro::Castro() 1 0.01094 0.01171 0.01245 0.34% Castro::check_for_nan() 20 0.01019 0.01124 0.01189 0.32% MultiFab::contains_nan() 20 0.01016 0.01122 0.01187 0.32% Castro::construct_old_source() 50 0.007446 0.01013 0.01101 0.30% Castro::construct_old_gravity_source() 10 0.007389 0.01006 0.01094 0.30% Castro::computeNewDt() 9 0.008561 0.008572 0.008583 0.23% Castro::initMFs() 1 0.007147 0.007723 0.008538 0.23% AmrLevel::AmrLevel(dm) 1 0.005947 0.006409 0.007424 0.20% StateData::define() 4 0.005919 0.006384 0.0074 0.20% Castro::enforce_min_density() 62 0.005676 0.005928 0.006205 0.17% Castro::swap_state_time_levels() 10 0.003327 0.004547 0.00531 0.15% Castro::finalize_advance() 10 0.003006 0.003358 0.003933 0.11% Castro::buildMetrics() 1 0.001819 0.001938 0.002066 0.06% Castro::post_regrid() 1 0.001549 0.001686 0.001969 0.05% Castro::finalize_do_advance() 10 0.0006416 0.001516 0.001801 0.05% Amr::InitAmr() 1 0.0003088 0.0003959 0.0006956 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.408e-05 0.0003452 0.0004404 0.01% DistributionMapping::LeastUsedCPUs() 1 9.065e-06 0.0003388 0.0004325 0.01% FabArrayBase::getCPC() 41 7.435e-05 8.59e-05 0.0001016 0.00% Castro::enforce_consistent_e() 1 8.365e-05 8.956e-05 0.0001016 0.00% Amr::writeSmallPlotFile() 1 2.479e-05 5.468e-05 7.024e-05 0.00% FabArrayBase::CPC::define() 2 2.076e-05 2.78e-05 3.779e-05 0.00% Castro::enforce_speed_limit() 62 2.415e-05 2.917e-05 3.245e-05 0.00% Amr::initSubcycle() 1 8.907e-06 1.128e-05 1.549e-05 0.00% Gravity::swapTimeLevels() 10 9.514e-06 1.114e-05 1.245e-05 0.00% Gravity::set_mass_offset() 10 8.082e-06 1.059e-05 1.175e-05 0.00% Castro::create_source_corrector() 10 7.47e-06 9.139e-06 1.067e-05 0.00% Castro::FluxRegCrseInit 10 6.966e-06 9.242e-06 1.026e-05 0.00% Castro::retry_advance_ctu() 10 4.254e-06 5.124e-06 6.553e-06 0.00% Castro::FluxRegFineAdd() 10 2.082e-06 2.347e-06 2.692e-06 0.00% DistributionMapping::Distribute() 1 9.86e-07 1.106e-06 1.361e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 41 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-24-g27ef4ea56945) finalized