MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-24-g27ef4ea56945) initialized Starting run at 22:03:39 UTC on 2023-04-13. Successfully read inputs file ... Castro git describe: 23.04-36-g745419547 AMReX git describe: 23.04-24-g27ef4ea56 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017081748 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.361090689 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353997018 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.33721797 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335426618 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.354809602 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341270779 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317197728 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.318185907 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.318241402 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.325076996 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010614726 seconds Ending run at 22:03:43 UTC on 2023-04-13. Run time = 3.562403892 Run time without initialization = 3.381387484 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.561 ... 3.562 ... 3.562 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2351 2.3660 2.4213 67.97% Gravity::make_radial_gravity() 21 0.3206 0.3278 0.3468 9.73% Castro::do_advance_ctu() 10 0.01942 0.0763 0.2111 5.93% Castro::initData() 1 0.04032 0.07775 0.1131 3.17% Castro::estTimeStep() 21 0.02619 0.06954 0.1089 3.06% FabArray::setVal() 143 0.06554 0.07466 0.08645 2.43% amrex::Copy() 193 0.06422 0.07461 0.08354 2.34% FabArray::ParallelCopy_finish() 41 0.03443 0.05379 0.07083 1.99% Castro::reset_internal_energy(Fab) 1008 0.04922 0.05026 0.05124 1.44% FabArray::ParallelCopy_nowait() 41 0.03733 0.04302 0.04526 1.27% Castro::normalize_species() 62 0.04207 0.04255 0.04342 1.22% StateData::FillBoundary(geom) 41 0.03154 0.03635 0.0393 1.10% FillPatchIterator::Initialize 41 0.02972 0.03584 0.03922 1.10% Castro::construct_new_gravity_source() 10 0.02321 0.02735 0.03178 0.89% Gravity::interpolate_monopole_grav() 21 0.02775 0.02884 0.02993 0.84% Castro::initialize_do_advance() 10 0.01289 0.01807 0.02096 0.59% Castro::computeTemp() 63 0.01994 0.02015 0.02051 0.58% VisMF::Write(FabArray) 2 0.01345 0.01416 0.01768 0.50% FabArray::Saxpy() 20 0.01432 0.01503 0.01623 0.46% Castro::initialize_advance() 10 0.00974 0.01211 0.0146 0.41% FabArray::setDomainBndry() 41 0.008585 0.012 0.01307 0.37% Amr::writePlotFile() 2 0.00732 0.01096 0.01193 0.33% MultiFab::contains_nan() 20 0.01052 0.01112 0.01188 0.33% Castro::construct_old_gravity_source() 10 0.007577 0.01033 0.0109 0.31% Castro::initMFs() 1 0.006886 0.007369 0.008748 0.25% main() 1 0.005433 0.006771 0.007391 0.21% StateData::define() 4 0.005677 0.005926 0.006581 0.18% Castro::construct_new_source() 50 0.005883 0.006242 0.006473 0.18% Castro::enforce_min_density() 62 0.005821 0.006099 0.006285 0.18% Castro::swap_state_time_levels() 10 0.003596 0.004724 0.004925 0.14% Gravity::get_new_grav_vector() 11 0.003176 0.003906 0.004244 0.12% Amr::coarseTimeStep() 10 0.001572 0.002631 0.003502 0.10% Gravity::get_old_grav_vector() 10 0.001862 0.002563 0.002929 0.08% Castro::finalize_do_advance() 10 0.0006632 0.001818 0.002272 0.06% Castro::buildMetrics() 1 0.001619 0.001694 0.001883 0.05% Castro::expand_state() 10 0.000733 0.001057 0.001201 0.03% Amr::timeStep() 10 0.0001651 0.000234 0.0004765 0.01% Amr::InitAmr() 1 0.0002705 0.0003139 0.0004338 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002772 0.000294 0.0003345 0.01% Castro::clean_state() 62 0.0001394 0.0001565 0.0001867 0.01% DistributionMapping::LeastUsedCPUs() 1 7.466e-06 0.0001263 0.0001677 0.00% Amr::writeSmallPlotFile() 1 2.599e-05 6.204e-05 0.0001433 0.00% Castro::finalize_advance() 10 9.511e-05 0.0001089 0.0001249 0.00% StateDataPhysBCFunct::() 41 8.335e-05 9.791e-05 0.0001195 0.00% Castro::enforce_consistent_e() 1 7.804e-05 8.878e-05 9.824e-05 0.00% Castro::Castro() 1 5.439e-05 6.843e-05 9.126e-05 0.00% FabArray::ParallelCopy() 41 6.619e-05 7.525e-05 8.989e-05 0.00% Amr::FinalizeInit() 1 3.795e-06 1.479e-05 8.584e-05 0.00% FillPatchSingleLevel 41 6.263e-05 7.19e-05 8.292e-05 0.00% FabArrayBase::getCPC() 41 4.527e-05 6.078e-05 7.929e-05 0.00% Castro::construct_old_source() 50 5.86e-05 7.035e-05 7.612e-05 0.00% Castro::do_old_sources() 10 5.435e-05 6.683e-05 7.573e-05 0.00% Castro::do_new_sources() 10 5.711e-05 6.754e-05 7.367e-05 0.00% Castro::apply_source_to_state() 20 3.607e-05 4.819e-05 5.766e-05 0.00% Castro::subcycle_advance_ctu() 10 4.053e-05 4.759e-05 5.554e-05 0.00% Castro::construct_old_gravity() 10 3.768e-05 4.54e-05 5.546e-05 0.00% Castro::advance() 10 3.716e-05 4.082e-05 5.023e-05 0.00% Castro::construct_new_gravity() 10 3.489e-05 4.098e-05 4.982e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.552e-05 3.833e-05 0.00% Amr::defBaseLevel() 1 1.801e-05 2.476e-05 3.129e-05 0.00% Castro::enforce_speed_limit() 62 2.74e-05 2.976e-05 3.121e-05 0.00% Castro::check_for_nan() 20 2.259e-05 2.519e-05 3.059e-05 0.00% Castro::post_timestep() 10 1.268e-05 2.122e-05 2.65e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.271e-05 1.661e-05 2.06e-05 0.00% Gravity::swapTimeLevels() 10 1.073e-05 1.332e-05 1.86e-05 0.00% Gravity::set_mass_offset() 10 1.039e-05 1.116e-05 1.192e-05 0.00% Castro::computeNewDt() 9 7.576e-06 8.48e-06 1.141e-05 0.00% Castro::create_source_corrector() 10 7.415e-06 9.308e-06 1.131e-05 0.00% Castro::FluxRegCrseInit 10 7.565e-06 9.353e-06 1.08e-05 0.00% Amr::initSubcycle() 1 8.765e-06 9.373e-06 1.038e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.594e-06 4.739e-06 8.952e-06 0.00% Castro::retry_advance_ctu() 10 4.363e-06 5.344e-06 7.504e-06 0.00% Castro::computeInitialDt() 2 3.49e-06 4.516e-06 5.221e-06 0.00% Amr::InitializeInit() 1 1.8e-06 2.499e-06 5.129e-06 0.00% Castro::post_init() 1 2.773e-06 3.806e-06 4.993e-06 0.00% Castro::post_regrid() 1 1.877e-06 3.052e-06 4.48e-06 0.00% Amr::init() 1 1.792e-06 2.068e-06 2.66e-06 0.00% Castro::FluxRegFineAdd() 10 2.004e-06 2.151e-06 2.322e-06 0.00% Amr::initialInit() 1 1.335e-06 1.547e-06 1.756e-06 0.00% DistributionMapping::Distribute() 1 8.96e-07 1.01e-06 1.104e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.561 3.562 3.562 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 94.41% Amr::timeStep() 10 3.35 3.351 3.352 94.09% Castro::advance() 10 3.334 3.335 3.336 93.63% Castro::subcycle_advance_ctu() 10 3.245 3.252 3.259 91.49% Castro::do_advance_ctu() 10 3.245 3.252 3.259 91.49% Castro::construct_ctu_hydro_source() 10 2.235 2.366 2.421 67.97% Gravity::make_radial_gravity() 21 0.3378 0.3455 0.3624 10.17% Gravity::get_new_grav_vector() 11 0.2279 0.2293 0.2298 6.45% Castro::construct_old_gravity() 10 0.1962 0.2038 0.2177 6.11% Gravity::get_old_grav_vector() 10 0.1954 0.2029 0.2171 6.09% Castro::construct_new_gravity() 10 0.2031 0.204 0.2051 5.76% FillPatchIterator::Initialize 41 0.1668 0.1813 0.1956 5.49% Castro::initialize_do_advance() 10 0.1523 0.1722 0.1866 5.24% Amr::init() 1 0.1804 0.1806 0.1806 5.07% Amr::initialInit() 1 0.1628 0.1632 0.1637 4.59% FillPatchSingleLevel 41 0.1172 0.1335 0.1457 4.09% Castro::expand_state() 10 0.1108 0.1237 0.1384 3.88% Amr::InitializeInit() 1 0.06124 0.09919 0.1344 3.77% Amr::defBaseLevel() 1 0.06123 0.09919 0.1344 3.77% Castro::clean_state() 62 0.1172 0.1186 0.1199 3.37% Castro::initData() 1 0.04432 0.08167 0.1171 3.29% Castro::estTimeStep() 21 0.02619 0.06954 0.1089 3.06% FabArray::ParallelCopy() 41 0.07985 0.09697 0.1083 3.04% Amr::FinalizeInit() 1 0.02926 0.06397 0.1019 2.86% FabArray::setVal() 143 0.06554 0.07466 0.08645 2.43% Castro::initialize_advance() 10 0.07179 0.07868 0.08633 2.42% amrex::Copy() 193 0.06422 0.07461 0.08354 2.34% Castro::do_new_sources() 10 0.06095 0.0693 0.07973 2.24% Castro::computeInitialDt() 2 0.002244 0.03743 0.07526 2.11% Castro::computeTemp() 63 0.06955 0.0707 0.07195 2.02% FabArray::ParallelCopy_finish() 41 0.03443 0.05379 0.07083 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04955 0.05055 0.05154 1.45% Castro::reset_internal_energy(Fab) 1008 0.04922 0.05026 0.05124 1.44% Castro::do_old_sources() 10 0.04205 0.04597 0.04678 1.31% FabArray::ParallelCopy_nowait() 41 0.03741 0.04311 0.04535 1.27% Castro::normalize_species() 62 0.04207 0.04255 0.04342 1.22% StateDataPhysBCFunct::() 41 0.03164 0.03645 0.0394 1.11% StateData::FillBoundary(geom) 41 0.03154 0.03635 0.0393 1.10% Castro::construct_new_source() 50 0.02942 0.03359 0.03825 1.07% Castro::construct_new_gravity_source() 10 0.02321 0.02735 0.03178 0.89% Gravity::interpolate_monopole_grav() 21 0.02775 0.02884 0.02993 0.84% Amr::writePlotFile() 2 0.02763 0.02811 0.02836 0.80% Castro::post_init() 1 0.02585 0.02614 0.02668 0.75% VisMF::Write(FabArray) 2 0.01345 0.01416 0.01768 0.50% Castro::post_timestep() 10 0.01594 0.01614 0.01633 0.46% Castro::apply_source_to_state() 20 0.01437 0.01508 0.01627 0.46% FabArray::Saxpy() 20 0.01432 0.01503 0.01623 0.46% FabArray::setDomainBndry() 41 0.008585 0.012 0.01307 0.37% Castro::Castro() 1 0.01107 0.01142 0.01223 0.34% Castro::check_for_nan() 20 0.01055 0.01114 0.0119 0.33% MultiFab::contains_nan() 20 0.01052 0.01112 0.01188 0.33% Castro::construct_old_source() 50 0.00764 0.0104 0.01097 0.31% Castro::construct_old_gravity_source() 10 0.007577 0.01033 0.0109 0.31% Castro::initMFs() 1 0.006886 0.007369 0.008748 0.25% Castro::computeNewDt() 9 0.008475 0.008489 0.008496 0.24% AmrLevel::AmrLevel(dm) 1 0.005693 0.005943 0.006598 0.19% StateData::define() 4 0.005677 0.005926 0.006581 0.18% Castro::enforce_min_density() 62 0.005821 0.006099 0.006285 0.18% Castro::swap_state_time_levels() 10 0.003596 0.004724 0.004925 0.14% Castro::finalize_advance() 10 0.002949 0.003672 0.004411 0.12% Castro::finalize_do_advance() 10 0.0006632 0.001818 0.002272 0.06% Castro::buildMetrics() 1 0.001736 0.001824 0.002039 0.06% Castro::post_regrid() 1 0.001621 0.001665 0.001706 0.05% Amr::InitAmr() 1 0.0002799 0.0003233 0.0004428 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.216e-05 0.0001321 0.0001742 0.00% DistributionMapping::LeastUsedCPUs() 1 7.466e-06 0.0001263 0.0001677 0.00% Amr::writeSmallPlotFile() 1 2.599e-05 6.204e-05 0.0001433 0.00% FabArrayBase::getCPC() 41 7.859e-05 8.63e-05 0.0001018 0.00% Castro::enforce_consistent_e() 1 7.804e-05 8.878e-05 9.824e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.552e-05 3.833e-05 0.00% Castro::enforce_speed_limit() 62 2.74e-05 2.976e-05 3.121e-05 0.00% Gravity::swapTimeLevels() 10 1.073e-05 1.332e-05 1.86e-05 0.00% Gravity::set_mass_offset() 10 1.039e-05 1.116e-05 1.192e-05 0.00% Castro::create_source_corrector() 10 7.415e-06 9.308e-06 1.131e-05 0.00% Castro::FluxRegCrseInit 10 7.565e-06 9.353e-06 1.08e-05 0.00% Amr::initSubcycle() 1 8.765e-06 9.373e-06 1.038e-05 0.00% Castro::retry_advance_ctu() 10 4.363e-06 5.344e-06 7.504e-06 0.00% Castro::FluxRegFineAdd() 10 2.004e-06 2.151e-06 2.322e-06 0.00% DistributionMapping::Distribute() 1 8.96e-07 1.01e-06 1.104e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-24-g27ef4ea56945) finalized