MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-24-g27ef4ea56945) initialized Starting run at 05:35:56 UTC on 2023-04-13. Successfully read inputs file ... Castro git describe: 23.04-7-g4402e6bb6 AMReX git describe: 23.04-24-g27ef4ea56 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017850457 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366754957 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.36387069 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.334491057 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336180913 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.357109268 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341538364 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311857061 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31197688 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313130202 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312557841 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010354042 seconds Ending run at 05:35:59 UTC on 2023-04-13. Run time = 3.552308888 Run time without initialization = 3.36742061 Average number of zones advanced per microsecond: 0.778 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.551 ... 3.552 ... 3.552 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2818 2.3500 2.4286 68.37% Gravity::make_radial_gravity() 21 0.3219 0.3357 0.354 9.97% Castro::do_advance_ctu() 10 0.01569 0.09781 0.1676 4.72% Castro::initData() 1 0.04205 0.0791 0.114 3.21% Castro::estTimeStep() 21 0.02281 0.06614 0.1096 3.08% FabArray::setVal() 143 0.06319 0.07266 0.08486 2.39% amrex::Copy() 193 0.0598 0.07098 0.07848 2.21% FabArray::ParallelCopy_finish() 41 0.03653 0.05086 0.07076 1.99% Castro::reset_internal_energy(Fab) 1008 0.0467 0.04976 0.05291 1.49% Castro::normalize_species() 62 0.04114 0.04228 0.04345 1.22% FabArray::ParallelCopy_nowait() 41 0.03678 0.04157 0.04295 1.21% StateData::FillBoundary(geom) 41 0.03292 0.03574 0.03914 1.10% FillPatchIterator::Initialize 41 0.02971 0.03351 0.036 1.01% Castro::construct_new_gravity_source() 10 0.02324 0.02656 0.03122 0.88% Gravity::interpolate_monopole_grav() 21 0.02798 0.02857 0.02994 0.84% Castro::computeTemp() 63 0.01752 0.01922 0.02081 0.59% Castro::initialize_do_advance() 10 0.01259 0.01748 0.02057 0.58% VisMF::Write(FabArray) 2 0.01369 0.01445 0.01726 0.49% FabArray::Saxpy() 20 0.01237 0.01394 0.01473 0.41% Castro::initialize_advance() 10 0.008359 0.01116 0.0138 0.39% FabArray::setDomainBndry() 41 0.008835 0.01117 0.01236 0.35% MultiFab::contains_nan() 20 0.01009 0.01124 0.01227 0.35% Castro::construct_old_gravity_source() 10 0.007659 0.01024 0.01091 0.31% Amr::writePlotFile() 2 0.00833 0.01005 0.0109 0.31% Castro::initMFs() 1 0.006838 0.007367 0.008215 0.23% main() 1 0.005446 0.006343 0.006898 0.19% StateData::define() 4 0.005799 0.006125 0.006647 0.19% Castro::enforce_min_density() 62 0.005915 0.006178 0.006596 0.19% Castro::construct_new_source() 50 0.005775 0.006198 0.006467 0.18% Gravity::get_new_grav_vector() 11 0.003109 0.003686 0.005419 0.15% Castro::swap_state_time_levels() 10 0.003354 0.004479 0.00473 0.13% Amr::coarseTimeStep() 10 0.001333 0.002335 0.003412 0.10% Gravity::get_old_grav_vector() 10 0.001557 0.002243 0.002632 0.07% Castro::finalize_do_advance() 10 0.0007781 0.001681 0.002061 0.06% Castro::buildMetrics() 1 0.001633 0.001735 0.001891 0.05% Castro::expand_state() 10 0.0006631 0.0008785 0.0009868 0.03% Amr::timeStep() 10 0.000182 0.0002518 0.0005063 0.01% Amr::InitAmr() 1 0.0002802 0.0003161 0.0004877 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002807 0.0002975 0.0003115 0.01% DistributionMapping::LeastUsedCPUs() 1 7.832e-06 0.0001872 0.0002239 0.01% Castro::clean_state() 62 0.0001437 0.0001716 0.0002021 0.01% Castro::finalize_advance() 10 8.219e-05 9.91e-05 0.0001224 0.00% StateDataPhysBCFunct::() 41 7.925e-05 8.8e-05 0.0001159 0.00% Castro::enforce_consistent_e() 1 7.605e-05 8.792e-05 9.348e-05 0.00% Castro::construct_old_source() 50 5.072e-05 6.809e-05 8.073e-05 0.00% FabArray::ParallelCopy() 41 6.475e-05 7.03e-05 7.703e-05 0.00% FillPatchSingleLevel 41 6.642e-05 7.128e-05 7.608e-05 0.00% Amr::FinalizeInit() 1 2.915e-06 1.289e-05 7.138e-05 0.00% Castro::Castro() 1 5.508e-05 6.066e-05 7.023e-05 0.00% Castro::subcycle_advance_ctu() 10 3.866e-05 4.55e-05 6.744e-05 0.00% Castro::do_old_sources() 10 5.504e-05 5.961e-05 6.704e-05 0.00% Castro::do_new_sources() 10 6.001e-05 6.224e-05 6.688e-05 0.00% FabArrayBase::getCPC() 41 4.562e-05 5.617e-05 6.215e-05 0.00% Castro::advance() 10 3.568e-05 4.121e-05 5.918e-05 0.00% Castro::apply_source_to_state() 20 4.25e-05 4.854e-05 5.893e-05 0.00% Amr::writeSmallPlotFile() 1 2.609e-05 4.245e-05 5.65e-05 0.00% Castro::construct_new_gravity() 10 3.66e-05 4.092e-05 4.528e-05 0.00% Castro::construct_old_gravity() 10 3.308e-05 3.956e-05 4.397e-05 0.00% Amr::defBaseLevel() 1 1.756e-05 2.388e-05 3.399e-05 0.00% FabArrayBase::CPC::define() 2 2.337e-05 2.603e-05 3.303e-05 0.00% Castro::check_for_nan() 20 2.269e-05 2.491e-05 3.153e-05 0.00% Castro::enforce_speed_limit() 62 2.425e-05 2.651e-05 2.892e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.165e-05 1.79e-05 2.221e-05 0.00% Castro::post_timestep() 10 1.401e-05 1.649e-05 1.982e-05 0.00% Gravity::swapTimeLevels() 10 9.831e-06 1.208e-05 1.387e-05 0.00% Gravity::set_mass_offset() 10 8.74e-06 1.003e-05 1.17e-05 0.00% Castro::create_source_corrector() 10 7.384e-06 8.864e-06 1.082e-05 0.00% Amr::initSubcycle() 1 8.733e-06 9.721e-06 1.072e-05 0.00% Castro::FluxRegCrseInit 10 7.04e-06 8.289e-06 1.036e-05 0.00% Castro::computeNewDt() 9 7.349e-06 8.024e-06 9.425e-06 0.00% Amr::InitializeInit() 1 1.958e-06 2.957e-06 8.532e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.637e-06 4.575e-06 6.295e-06 0.00% Castro::retry_advance_ctu() 10 4.068e-06 5.347e-06 6.221e-06 0.00% Castro::computeInitialDt() 2 3.444e-06 4.236e-06 5.562e-06 0.00% Castro::post_init() 1 2.728e-06 3.753e-06 4.763e-06 0.00% Castro::post_regrid() 1 1.787e-06 2.599e-06 3.356e-06 0.00% Castro::FluxRegFineAdd() 10 2.155e-06 2.351e-06 2.882e-06 0.00% Amr::init() 1 1.789e-06 2.35e-06 2.778e-06 0.00% Amr::initialInit() 1 1.152e-06 1.482e-06 1.7e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 1.029e-06 1.274e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.551 3.552 3.552 100.00% Amr::coarseTimeStep() 10 3.35 3.35 3.35 94.31% Amr::timeStep() 10 3.337 3.338 3.339 94.00% Castro::advance() 10 3.321 3.322 3.323 93.54% Castro::subcycle_advance_ctu() 10 3.234 3.243 3.251 91.52% Castro::do_advance_ctu() 10 3.234 3.243 3.251 91.52% Castro::construct_ctu_hydro_source() 10 2.282 2.35 2.429 68.37% Gravity::make_radial_gravity() 21 0.3372 0.3518 0.3682 10.37% Gravity::get_new_grav_vector() 11 0.2281 0.2324 0.2355 6.63% Castro::construct_old_gravity() 10 0.194 0.2026 0.2155 6.07% Gravity::get_old_grav_vector() 10 0.1933 0.2019 0.215 6.05% Castro::construct_new_gravity() 10 0.2002 0.2036 0.2064 5.81% FillPatchIterator::Initialize 41 0.1581 0.1732 0.1867 5.25% Amr::init() 1 0.1842 0.1844 0.1844 5.19% Castro::initialize_do_advance() 10 0.157 0.1665 0.1774 5.00% Amr::initialInit() 1 0.1662 0.1675 0.1682 4.74% FillPatchSingleLevel 41 0.1175 0.1285 0.1422 4.00% Amr::InitializeInit() 1 0.0646 0.1008 0.1352 3.81% Amr::defBaseLevel() 1 0.06459 0.1008 0.1352 3.81% Castro::expand_state() 10 0.1086 0.1192 0.1315 3.70% Castro::clean_state() 62 0.1121 0.117 0.1229 3.46% Castro::initData() 1 0.04561 0.08308 0.1181 3.33% Castro::estTimeStep() 21 0.02281 0.06614 0.1096 3.08% FabArray::ParallelCopy() 41 0.07963 0.09259 0.1077 3.03% Amr::FinalizeInit() 1 0.03204 0.06676 0.1034 2.91% FabArray::setVal() 143 0.06319 0.07266 0.08486 2.39% Castro::initialize_advance() 10 0.06741 0.0756 0.0841 2.37% amrex::Copy() 193 0.0598 0.07098 0.07848 2.21% Castro::do_new_sources() 10 0.05942 0.06678 0.07685 2.16% Castro::computeTemp() 63 0.0645 0.06928 0.07366 2.07% Castro::computeInitialDt() 2 0.002222 0.0366 0.07279 2.05% FabArray::ParallelCopy_finish() 41 0.03653 0.05086 0.07076 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04698 0.05006 0.05321 1.50% Castro::reset_internal_energy(Fab) 1008 0.0467 0.04976 0.05291 1.49% Castro::do_old_sources() 10 0.0402 0.04519 0.04651 1.31% Castro::normalize_species() 62 0.04114 0.04228 0.04345 1.22% FabArray::ParallelCopy_nowait() 41 0.03685 0.04165 0.04304 1.21% StateDataPhysBCFunct::() 41 0.033 0.03583 0.03923 1.10% StateData::FillBoundary(geom) 41 0.03292 0.03574 0.03914 1.10% Castro::construct_new_source() 50 0.02923 0.03276 0.03769 1.06% Castro::construct_new_gravity_source() 10 0.02324 0.02656 0.03122 0.88% Castro::post_init() 1 0.0286 0.02979 0.03047 0.86% Gravity::interpolate_monopole_grav() 21 0.02798 0.02857 0.02994 0.84% Amr::writePlotFile() 2 0.02659 0.0273 0.02843 0.80% VisMF::Write(FabArray) 2 0.01369 0.01445 0.01726 0.49% Castro::post_timestep() 10 0.0155 0.01585 0.01644 0.46% Castro::apply_source_to_state() 20 0.01241 0.01399 0.01478 0.42% FabArray::Saxpy() 20 0.01237 0.01394 0.01473 0.41% FabArray::setDomainBndry() 41 0.008835 0.01117 0.01236 0.35% Castro::check_for_nan() 20 0.01011 0.01126 0.01229 0.35% MultiFab::contains_nan() 20 0.01009 0.01124 0.01227 0.35% Castro::Castro() 1 0.01084 0.01133 0.01214 0.34% Castro::construct_old_source() 50 0.00771 0.01031 0.01099 0.31% Castro::construct_old_gravity_source() 10 0.007659 0.01024 0.01091 0.31% Castro::computeNewDt() 9 0.008591 0.008599 0.008609 0.24% Castro::initMFs() 1 0.006838 0.007367 0.008215 0.23% AmrLevel::AmrLevel(dm) 1 0.005815 0.006143 0.006669 0.19% StateData::define() 4 0.005799 0.006125 0.006647 0.19% Castro::enforce_min_density() 62 0.005915 0.006178 0.006596 0.19% Castro::swap_state_time_levels() 10 0.003354 0.004479 0.00473 0.13% Castro::finalize_advance() 10 0.002935 0.00362 0.004308 0.12% Castro::finalize_do_advance() 10 0.0007781 0.001681 0.002061 0.06% Castro::buildMetrics() 1 0.001746 0.001867 0.002043 0.06% Castro::post_regrid() 1 0.001547 0.001617 0.001876 0.05% Amr::InitAmr() 1 0.0002897 0.0003259 0.0004978 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.326e-05 0.0001928 0.000231 0.01% DistributionMapping::LeastUsedCPUs() 1 7.832e-06 0.0001872 0.0002239 0.01% Castro::enforce_consistent_e() 1 7.605e-05 8.792e-05 9.348e-05 0.00% FabArrayBase::getCPC() 41 7.792e-05 8.221e-05 8.68e-05 0.00% Amr::writeSmallPlotFile() 1 2.609e-05 4.245e-05 5.65e-05 0.00% FabArrayBase::CPC::define() 2 2.337e-05 2.603e-05 3.303e-05 0.00% Castro::enforce_speed_limit() 62 2.425e-05 2.651e-05 2.892e-05 0.00% Gravity::swapTimeLevels() 10 9.831e-06 1.208e-05 1.387e-05 0.00% Gravity::set_mass_offset() 10 8.74e-06 1.003e-05 1.17e-05 0.00% Castro::create_source_corrector() 10 7.384e-06 8.864e-06 1.082e-05 0.00% Amr::initSubcycle() 1 8.733e-06 9.721e-06 1.072e-05 0.00% Castro::FluxRegCrseInit 10 7.04e-06 8.289e-06 1.036e-05 0.00% Castro::retry_advance_ctu() 10 4.068e-06 5.347e-06 6.221e-06 0.00% Castro::FluxRegFineAdd() 10 2.155e-06 2.351e-06 2.882e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 1.029e-06 1.274e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-24-g27ef4ea56945) finalized