MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-24-g27ef4ea56945) initialized Starting run at 05:25:14 UTC on 2023-04-14. Successfully read inputs file ... Castro git describe: 23.04-11-gdc5a63a14 AMReX git describe: 23.04-24-g27ef4ea56 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016663419 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362230302 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.342925906 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.361499817 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336824204 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.364049425 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.332112458 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314245223 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.31278691 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311208232 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311330027 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010483298 seconds Ending run at 05:25:18 UTC on 2023-04-14. Run time = 3.562249005 Run time without initialization = 3.366827162 Average number of zones advanced per microsecond: 0.779 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.562 ... 3.562 ... 3.562 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3137 2.3674 2.3910 67.12% Gravity::make_radial_gravity() 21 0.3335 0.3399 0.3554 9.98% Castro::do_advance_ctu() 10 0.06299 0.08914 0.1467 4.12% Castro::initData() 1 0.03844 0.08469 0.113 3.17% Castro::estTimeStep() 21 0.02135 0.05651 0.1105 3.10% amrex::Copy() 193 0.05901 0.07234 0.07975 2.24% FabArray::setVal() 143 0.06381 0.06938 0.07872 2.21% FabArray::ParallelCopy_finish() 41 0.03675 0.04978 0.07512 2.11% Castro::reset_internal_energy(Fab) 1008 0.04819 0.0502 0.05217 1.46% Castro::normalize_species() 62 0.04142 0.04258 0.04555 1.28% FabArray::ParallelCopy_nowait() 41 0.0367 0.04193 0.04416 1.24% StateData::FillBoundary(geom) 41 0.03365 0.03579 0.03735 1.05% FillPatchIterator::Initialize 41 0.02859 0.03458 0.03676 1.03% Gravity::interpolate_monopole_grav() 21 0.02823 0.02864 0.02961 0.83% Castro::construct_new_gravity_source() 10 0.02319 0.0256 0.02913 0.82% Castro::computeTemp() 63 0.01879 0.01983 0.02084 0.59% Castro::initialize_do_advance() 10 0.01243 0.01773 0.02063 0.58% VisMF::Write(FabArray) 2 0.01393 0.0146 0.01774 0.50% FabArray::Saxpy() 20 0.01238 0.01373 0.01453 0.41% Castro::initialize_advance() 10 0.007992 0.01098 0.014 0.39% FabArray::setDomainBndry() 41 0.008557 0.01148 0.01268 0.36% Amr::writePlotFile() 2 0.006916 0.01086 0.01261 0.35% MultiFab::contains_nan() 20 0.01062 0.01102 0.01144 0.32% Castro::initMFs() 1 0.006899 0.007905 0.01089 0.31% Castro::construct_old_gravity_source() 10 0.007222 0.01008 0.01078 0.30% StateData::define() 4 0.005735 0.006437 0.00844 0.24% main() 1 0.005774 0.006163 0.006478 0.18% Castro::enforce_min_density() 62 0.005688 0.005993 0.006441 0.18% Castro::construct_new_source() 50 0.005712 0.006152 0.006347 0.18% Gravity::get_new_grav_vector() 11 0.003095 0.004223 0.006077 0.17% Castro::swap_state_time_levels() 10 0.003335 0.004568 0.005338 0.15% Amr::coarseTimeStep() 10 0.001231 0.002222 0.002996 0.08% Gravity::get_old_grav_vector() 10 0.001819 0.002472 0.002808 0.08% Castro::buildMetrics() 1 0.00163 0.001838 0.002408 0.07% Castro::finalize_do_advance() 10 0.0006665 0.001624 0.002028 0.06% Castro::expand_state() 10 0.0007211 0.0009748 0.001142 0.03% Amr::InitAmr() 1 0.0002809 0.0003654 0.0006722 0.02% DistributionMapping::LeastUsedCPUs() 1 8.195e-06 0.0003526 0.0004428 0.01% Amr::timeStep() 10 0.0001736 0.000235 0.000434 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000281 0.0002937 0.0003132 0.01% Castro::clean_state() 62 0.0001387 0.0001649 0.0001862 0.01% Castro::enforce_consistent_e() 1 8.452e-05 9.843e-05 0.0001323 0.00% StateDataPhysBCFunct::() 41 8.172e-05 9.63e-05 0.0001299 0.00% Castro::finalize_advance() 10 9.613e-05 0.000106 0.0001265 0.00% Castro::Castro() 1 5.712e-05 7.044e-05 9.014e-05 0.00% Amr::FinalizeInit() 1 3.733e-06 1.502e-05 8.631e-05 0.00% Castro::do_new_sources() 10 5.104e-05 6.602e-05 7.931e-05 0.00% Castro::construct_old_source() 50 4.203e-05 6.419e-05 7.64e-05 0.00% FillPatchSingleLevel 41 6.175e-05 6.883e-05 7.581e-05 0.00% FabArray::ParallelCopy() 41 6.147e-05 6.976e-05 7.471e-05 0.00% FabArrayBase::getCPC() 41 4.264e-05 5.659e-05 6.839e-05 0.00% Castro::do_old_sources() 10 4.89e-05 5.931e-05 6.558e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 4.77e-05 6.306e-05 0.00% Castro::advance() 10 3.573e-05 4.107e-05 5.647e-05 0.00% Castro::apply_source_to_state() 20 3.669e-05 4.534e-05 5.571e-05 0.00% Castro::subcycle_advance_ctu() 10 3.503e-05 4.432e-05 5.25e-05 0.00% Castro::construct_new_gravity() 10 3.306e-05 4.01e-05 4.804e-05 0.00% Castro::construct_old_gravity() 10 3.609e-05 3.928e-05 4.765e-05 0.00% FabArrayBase::CPC::define() 2 2.21e-05 2.828e-05 3.349e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.826e-05 2.56e-05 3.119e-05 0.00% Amr::defBaseLevel() 1 2.044e-05 2.444e-05 2.974e-05 0.00% Castro::enforce_speed_limit() 62 2.376e-05 2.666e-05 2.898e-05 0.00% Castro::check_for_nan() 20 2.267e-05 2.422e-05 2.688e-05 0.00% Castro::post_timestep() 10 1.263e-05 1.571e-05 1.72e-05 0.00% Amr::initSubcycle() 1 9.133e-06 1.087e-05 1.587e-05 0.00% Gravity::swapTimeLevels() 10 8.362e-06 1.192e-05 1.437e-05 0.00% Gravity::set_mass_offset() 10 9.935e-06 1.088e-05 1.325e-05 0.00% Castro::create_source_corrector() 10 6.727e-06 9.067e-06 1.304e-05 0.00% Castro::FluxRegCrseInit 10 7.812e-06 9.055e-06 1.125e-05 0.00% Castro::post_init() 1 2.953e-06 5.277e-06 9.914e-06 0.00% Castro::computeNewDt() 9 7.956e-06 8.569e-06 9.111e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.602e-06 5.16e-06 7.008e-06 0.00% Amr::InitializeInit() 1 2.237e-06 2.942e-06 6.627e-06 0.00% Castro::retry_advance_ctu() 10 4.823e-06 5.752e-06 6.308e-06 0.00% Castro::computeInitialDt() 2 3.415e-06 4.667e-06 5.638e-06 0.00% Castro::post_regrid() 1 1.777e-06 3.241e-06 4.913e-06 0.00% Amr::init() 1 2.013e-06 2.332e-06 2.738e-06 0.00% Castro::FluxRegFineAdd() 10 2.009e-06 2.245e-06 2.46e-06 0.00% Amr::initialInit() 1 1.179e-06 1.578e-06 2.222e-06 0.00% DistributionMapping::Distribute() 1 9.05e-07 1.165e-06 1.474e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.562 3.562 3.562 100.00% Amr::coarseTimeStep() 10 3.35 3.35 3.35 94.04% Amr::timeStep() 10 3.337 3.338 3.339 93.73% Castro::advance() 10 3.321 3.322 3.322 93.26% Castro::subcycle_advance_ctu() 10 3.241 3.246 3.25 91.24% Castro::do_advance_ctu() 10 3.24 3.246 3.25 91.24% Castro::construct_ctu_hydro_source() 10 2.314 2.367 2.391 67.12% Gravity::make_radial_gravity() 21 0.3512 0.3566 0.3682 10.34% Gravity::get_new_grav_vector() 11 0.2362 0.2382 0.2405 6.75% Castro::construct_old_gravity() 10 0.1992 0.2035 0.2119 5.95% Gravity::get_old_grav_vector() 10 0.1984 0.2027 0.2112 5.93% Castro::construct_new_gravity() 10 0.198 0.1993 0.2004 5.62% Amr::init() 1 0.1945 0.1949 0.195 5.47% FillPatchIterator::Initialize 41 0.1623 0.1739 0.1854 5.20% Amr::initialInit() 1 0.1765 0.1774 0.1778 4.99% Castro::initialize_do_advance() 10 0.1583 0.1668 0.1748 4.91% FillPatchSingleLevel 41 0.1142 0.1278 0.1482 4.16% Amr::InitializeInit() 1 0.05976 0.108 0.1345 3.78% Amr::defBaseLevel() 1 0.05976 0.108 0.1345 3.78% Castro::expand_state() 10 0.1094 0.1188 0.1265 3.55% Castro::clean_state() 62 0.115 0.118 0.1212 3.40% Amr::FinalizeInit() 1 0.04319 0.06942 0.118 3.31% Castro::initData() 1 0.04239 0.08897 0.117 3.28% FabArray::ParallelCopy() 41 0.07901 0.09187 0.112 3.14% Castro::estTimeStep() 21 0.02135 0.05651 0.1105 3.10% amrex::Copy() 193 0.05901 0.07234 0.07975 2.24% FabArray::setVal() 143 0.06381 0.06938 0.07872 2.21% Castro::initialize_advance() 10 0.06723 0.07199 0.07789 2.19% Castro::computeInitialDt() 2 0.002202 0.02869 0.07697 2.16% FabArray::ParallelCopy_finish() 41 0.03675 0.04978 0.07512 2.11% Castro::do_new_sources() 10 0.06051 0.06618 0.07468 2.10% Castro::computeTemp() 63 0.06835 0.07032 0.0733 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04847 0.05049 0.05246 1.47% Castro::reset_internal_energy(Fab) 1008 0.04819 0.0502 0.05217 1.46% Castro::do_old_sources() 10 0.03999 0.04495 0.0463 1.30% Castro::normalize_species() 62 0.04142 0.04258 0.04555 1.28% FabArray::ParallelCopy_nowait() 41 0.0368 0.04202 0.04425 1.24% Castro::post_init() 1 0.03939 0.04005 0.04074 1.14% StateDataPhysBCFunct::() 41 0.03374 0.03589 0.03744 1.05% StateData::FillBoundary(geom) 41 0.03365 0.03579 0.03735 1.05% Castro::construct_new_source() 50 0.02935 0.03175 0.03545 1.00% Gravity::interpolate_monopole_grav() 21 0.02823 0.02864 0.02961 0.83% Castro::construct_new_gravity_source() 10 0.02319 0.0256 0.02913 0.82% Amr::writePlotFile() 2 0.02741 0.02807 0.029 0.81% VisMF::Write(FabArray) 2 0.01393 0.0146 0.01774 0.50% Castro::post_timestep() 10 0.01558 0.01592 0.01649 0.46% Castro::Castro() 1 0.01112 0.01214 0.01509 0.42% Castro::apply_source_to_state() 20 0.01242 0.01377 0.01458 0.41% FabArray::Saxpy() 20 0.01238 0.01373 0.01453 0.41% FabArray::setDomainBndry() 41 0.008557 0.01148 0.01268 0.36% Castro::check_for_nan() 20 0.01064 0.01105 0.01147 0.32% MultiFab::contains_nan() 20 0.01062 0.01102 0.01144 0.32% Castro::initMFs() 1 0.006899 0.007905 0.01089 0.31% Castro::construct_old_source() 50 0.007264 0.01015 0.01084 0.30% Castro::construct_old_gravity_source() 10 0.007222 0.01008 0.01078 0.30% Castro::computeNewDt() 9 0.008562 0.00858 0.00859 0.24% AmrLevel::AmrLevel(dm) 1 0.005764 0.006463 0.008471 0.24% StateData::define() 4 0.005735 0.006437 0.00844 0.24% Castro::enforce_min_density() 62 0.005688 0.005993 0.006441 0.18% Castro::swap_state_time_levels() 10 0.003335 0.004568 0.005338 0.15% Castro::finalize_advance() 10 0.002942 0.003353 0.003759 0.11% Castro::post_regrid() 1 0.001514 0.001911 0.0029 0.08% Castro::buildMetrics() 1 0.001754 0.001983 0.002618 0.07% Castro::finalize_do_advance() 10 0.0006665 0.001624 0.002028 0.06% Amr::InitAmr() 1 0.0002905 0.0003763 0.0006881 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.346e-05 0.0003589 0.000451 0.01% DistributionMapping::LeastUsedCPUs() 1 8.195e-06 0.0003526 0.0004428 0.01% Castro::enforce_consistent_e() 1 8.452e-05 9.843e-05 0.0001323 0.00% FabArrayBase::getCPC() 41 7.513e-05 8.487e-05 9.67e-05 0.00% Amr::writeSmallPlotFile() 1 2.552e-05 4.77e-05 6.306e-05 0.00% FabArrayBase::CPC::define() 2 2.21e-05 2.828e-05 3.349e-05 0.00% Castro::enforce_speed_limit() 62 2.376e-05 2.666e-05 2.898e-05 0.00% Amr::initSubcycle() 1 9.133e-06 1.087e-05 1.587e-05 0.00% Gravity::swapTimeLevels() 10 8.362e-06 1.192e-05 1.437e-05 0.00% Gravity::set_mass_offset() 10 9.935e-06 1.088e-05 1.325e-05 0.00% Castro::create_source_corrector() 10 6.727e-06 9.067e-06 1.304e-05 0.00% Castro::FluxRegCrseInit 10 7.812e-06 9.055e-06 1.125e-05 0.00% Castro::retry_advance_ctu() 10 4.823e-06 5.752e-06 6.308e-06 0.00% Castro::FluxRegFineAdd() 10 2.009e-06 2.245e-06 2.46e-06 0.00% DistributionMapping::Distribute() 1 9.05e-07 1.165e-06 1.474e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 41 B 78 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-24-g27ef4ea56945) finalized