MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-25-g6b294a5cd3e5) initialized Starting run at 23:01:44 UTC on 2023-04-17. Successfully read inputs file ... Castro git describe: 23.04-22-g8408c7680 AMReX git describe: 23.04-25-g6b294a5cd Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015959882 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.366525986 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.353527171 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341068558 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341000447 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.372950665 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.343201859 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311883424 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315010894 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.319214898 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318681143 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01050319 seconds Ending run at 23:01:47 UTC on 2023-04-17. Run time = 3.582080017 Run time without initialization = 3.400940629 Average number of zones advanced per microsecond: 0.771 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.581 ... 3.582 ... 3.582 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3156 2.3645 2.4291 67.81% Gravity::make_radial_gravity() 21 0.3245 0.3357 0.3435 9.59% Castro::do_advance_ctu() 10 0.02941 0.09678 0.1441 4.02% Castro::initData() 1 0.03844 0.07653 0.1133 3.16% Castro::estTimeStep() 21 0.02394 0.06775 0.09834 2.75% FabArray::setVal() 143 0.06693 0.07557 0.08668 2.42% amrex::Copy() 193 0.06868 0.07455 0.08288 2.31% FabArray::ParallelCopy_finish() 41 0.03659 0.04989 0.05564 1.55% Castro::reset_internal_energy(Fab) 1008 0.04899 0.05063 0.05247 1.46% FabArray::ParallelCopy_nowait() 41 0.04102 0.04323 0.04463 1.25% Castro::normalize_species() 62 0.04163 0.04269 0.0443 1.24% StateData::FillBoundary(geom) 41 0.03336 0.03629 0.03918 1.09% FillPatchIterator::Initialize 41 0.02988 0.03573 0.03875 1.08% Castro::construct_new_gravity_source() 10 0.02396 0.02689 0.03129 0.87% Gravity::interpolate_monopole_grav() 21 0.02804 0.02839 0.02883 0.80% Castro::initialize_do_advance() 10 0.01342 0.01817 0.02171 0.61% Castro::computeTemp() 63 0.01907 0.02015 0.02075 0.58% VisMF::Write(FabArray) 2 0.01346 0.01405 0.01683 0.47% FabArray::Saxpy() 20 0.014 0.01484 0.01537 0.43% Castro::initialize_advance() 10 0.009761 0.01213 0.01468 0.41% FabArray::setDomainBndry() 41 0.00883 0.01187 0.01311 0.37% MultiFab::contains_nan() 20 0.01162 0.01237 0.01309 0.37% Castro::construct_old_gravity_source() 10 0.008906 0.01079 0.01132 0.32% Amr::writePlotFile() 2 0.006927 0.009661 0.01026 0.29% Castro::initMFs() 1 0.007024 0.007049 0.007082 0.20% Castro::enforce_min_density() 62 0.005886 0.006124 0.006712 0.19% main() 1 0.005862 0.006418 0.006707 0.19% Castro::construct_new_source() 50 0.006176 0.006403 0.00658 0.18% Gravity::get_new_grav_vector() 11 0.003052 0.004184 0.006057 0.17% StateData::define() 4 0.005776 0.005815 0.00585 0.16% Castro::swap_state_time_levels() 10 0.003537 0.004784 0.00498 0.14% Amr::coarseTimeStep() 10 0.001743 0.002975 0.004011 0.11% Gravity::get_old_grav_vector() 10 0.001786 0.002351 0.00271 0.08% Castro::finalize_do_advance() 10 0.001196 0.001654 0.001969 0.05% Castro::buildMetrics() 1 0.001647 0.001661 0.001682 0.05% Castro::expand_state() 10 0.0007959 0.0009757 0.001089 0.03% Amr::InitAmr() 1 0.0002659 0.000298 0.0004443 0.01% Amr::timeStep() 10 0.0001713 0.0002294 0.0003922 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002786 0.0002934 0.0003042 0.01% Castro::clean_state() 62 0.0001457 0.0001811 0.0002303 0.01% DistributionMapping::LeastUsedCPUs() 1 6.875e-06 0.0001503 0.0001717 0.00% Castro::finalize_advance() 10 7.557e-05 0.0001052 0.0001276 0.00% Amr::FinalizeInit() 1 4.214e-06 1.793e-05 0.0001097 0.00% StateDataPhysBCFunct::() 41 7.823e-05 8.951e-05 0.0001037 0.00% Castro::Castro() 1 7.294e-05 8.652e-05 0.0001036 0.00% Castro::enforce_consistent_e() 1 7.975e-05 8.621e-05 9.854e-05 0.00% Castro::do_old_sources() 10 5.169e-05 6.875e-05 8.292e-05 0.00% FabArray::ParallelCopy() 41 7.033e-05 7.435e-05 8.184e-05 0.00% Castro::construct_old_source() 50 4.654e-05 6.502e-05 7.856e-05 0.00% Castro::do_new_sources() 10 5.609e-05 6.716e-05 7.66e-05 0.00% FillPatchSingleLevel 41 6.263e-05 6.817e-05 7.586e-05 0.00% FabArrayBase::getCPC() 41 3.932e-05 5.819e-05 7.425e-05 0.00% Amr::writeSmallPlotFile() 1 2.574e-05 5.313e-05 6.809e-05 0.00% Castro::apply_source_to_state() 20 3.173e-05 4.409e-05 5.51e-05 0.00% Castro::subcycle_advance_ctu() 10 3.903e-05 4.59e-05 5.385e-05 0.00% Castro::advance() 10 3.407e-05 4.094e-05 5.155e-05 0.00% Castro::construct_new_gravity() 10 3.298e-05 3.907e-05 4.825e-05 0.00% Castro::construct_old_gravity() 10 3.282e-05 3.89e-05 4.458e-05 0.00% Castro::enforce_speed_limit() 62 2.336e-05 2.993e-05 3.779e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.774e-05 2.348e-05 3.154e-05 0.00% FabArrayBase::CPC::define() 2 2.229e-05 2.513e-05 2.828e-05 0.00% Amr::defBaseLevel() 1 1.908e-05 2.184e-05 2.571e-05 0.00% Castro::check_for_nan() 20 1.953e-05 2.084e-05 2.133e-05 0.00% Castro::post_timestep() 10 1.305e-05 1.614e-05 1.845e-05 0.00% Gravity::swapTimeLevels() 10 1.02e-05 1.194e-05 1.407e-05 0.00% Gravity::set_mass_offset() 10 9.159e-06 1.011e-05 1.122e-05 0.00% Castro::FluxRegCrseInit 10 6.155e-06 9.265e-06 1.073e-05 0.00% Castro::computeNewDt() 9 8.677e-06 9.213e-06 1.024e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.767e-06 6.978e-06 1.015e-05 0.00% Amr::initSubcycle() 1 8.779e-06 9.333e-06 1.001e-05 0.00% Castro::create_source_corrector() 10 7.938e-06 9.099e-06 9.745e-06 0.00% Castro::retry_advance_ctu() 10 4.322e-06 5.033e-06 6.356e-06 0.00% Amr::InitializeInit() 1 2.004e-06 2.687e-06 5.463e-06 0.00% Castro::post_init() 1 3.273e-06 3.921e-06 5.01e-06 0.00% Castro::computeInitialDt() 2 3.478e-06 4.193e-06 4.814e-06 0.00% Castro::post_regrid() 1 1.729e-06 2.904e-06 3.899e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.367e-06 3.213e-06 0.00% Amr::init() 1 2.162e-06 2.448e-06 3.035e-06 0.00% Amr::initialInit() 1 1.436e-06 1.702e-06 1.95e-06 0.00% DistributionMapping::Distribute() 1 8.75e-07 1.161e-06 1.334e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.581 3.582 3.582 100.00% Amr::coarseTimeStep() 10 3.384 3.384 3.384 94.46% Amr::timeStep() 10 3.37 3.371 3.372 94.13% Castro::advance() 10 3.354 3.355 3.355 93.67% Castro::subcycle_advance_ctu() 10 3.265 3.274 3.279 91.55% Castro::do_advance_ctu() 10 3.265 3.274 3.279 91.55% Castro::construct_ctu_hydro_source() 10 2.316 2.364 2.429 67.81% Gravity::make_radial_gravity() 21 0.3405 0.3524 0.361 10.08% Gravity::get_new_grav_vector() 11 0.2277 0.2315 0.2344 6.54% Castro::construct_old_gravity() 10 0.1981 0.2057 0.212 5.92% Gravity::get_old_grav_vector() 10 0.1973 0.2049 0.2113 5.90% Castro::construct_new_gravity() 10 0.2029 0.206 0.2084 5.82% FillPatchIterator::Initialize 41 0.1653 0.1773 0.1861 5.20% Castro::initialize_do_advance() 10 0.1569 0.1715 0.182 5.08% Amr::init() 1 0.1805 0.1807 0.1807 5.04% Amr::initialInit() 1 0.1644 0.1646 0.1647 4.60% Amr::InitializeInit() 1 0.06054 0.09861 0.1355 3.78% Amr::defBaseLevel() 1 0.06054 0.09861 0.1355 3.78% FillPatchSingleLevel 41 0.1163 0.1297 0.1353 3.78% Castro::expand_state() 10 0.1119 0.1227 0.1327 3.70% Castro::clean_state() 62 0.1154 0.1192 0.1235 3.45% Castro::initData() 1 0.04254 0.08065 0.1175 3.28% Amr::FinalizeInit() 1 0.02903 0.06599 0.1042 2.91% FabArray::ParallelCopy() 41 0.08022 0.09327 0.09907 2.77% Castro::estTimeStep() 21 0.02394 0.06775 0.09834 2.75% FabArray::setVal() 143 0.06693 0.07557 0.08668 2.42% Castro::initialize_advance() 10 0.07147 0.07728 0.08505 2.37% amrex::Copy() 193 0.06868 0.07455 0.08288 2.31% Castro::do_new_sources() 10 0.06165 0.06907 0.07774 2.17% Castro::computeInitialDt() 2 0.002017 0.03887 0.07696 2.15% Castro::computeTemp() 63 0.06837 0.07107 0.07329 2.05% FabArray::ParallelCopy_finish() 41 0.03659 0.04989 0.05564 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04927 0.05092 0.05278 1.47% Castro::reset_internal_energy(Fab) 1008 0.04899 0.05063 0.05247 1.46% Castro::do_old_sources() 10 0.0458 0.04719 0.04771 1.33% FabArray::ParallelCopy_nowait() 41 0.04109 0.04331 0.04472 1.25% Castro::normalize_species() 62 0.04163 0.04269 0.0443 1.24% StateDataPhysBCFunct::() 41 0.03345 0.03638 0.03927 1.10% StateData::FillBoundary(geom) 41 0.03336 0.03629 0.03918 1.09% Castro::construct_new_source() 50 0.03018 0.03329 0.03777 1.05% Castro::construct_new_gravity_source() 10 0.02396 0.02689 0.03129 0.87% Gravity::interpolate_monopole_grav() 21 0.02804 0.02839 0.02883 0.80% Amr::writePlotFile() 2 0.02657 0.02668 0.02679 0.75% Castro::post_init() 1 0.02641 0.02659 0.02671 0.75% VisMF::Write(FabArray) 2 0.01346 0.01405 0.01683 0.47% Castro::post_timestep() 10 0.01552 0.01605 0.01633 0.46% Castro::apply_source_to_state() 20 0.01405 0.01489 0.01541 0.43% FabArray::Saxpy() 20 0.014 0.01484 0.01537 0.43% FabArray::setDomainBndry() 41 0.00883 0.01187 0.01311 0.37% Castro::check_for_nan() 20 0.01164 0.01239 0.01311 0.37% MultiFab::contains_nan() 20 0.01162 0.01237 0.01309 0.37% Castro::Castro() 1 0.01189 0.01193 0.01209 0.34% Castro::construct_old_source() 50 0.008953 0.01085 0.01139 0.32% Castro::construct_old_gravity_source() 10 0.008906 0.01079 0.01132 0.32% Castro::computeNewDt() 9 0.008953 0.008958 0.008968 0.25% Castro::initMFs() 1 0.007024 0.007049 0.007082 0.20% Castro::enforce_min_density() 62 0.005886 0.006124 0.006712 0.19% AmrLevel::AmrLevel(dm) 1 0.005803 0.005839 0.005874 0.16% StateData::define() 4 0.005776 0.005815 0.00585 0.16% Castro::swap_state_time_levels() 10 0.003537 0.004784 0.00498 0.14% Castro::finalize_advance() 10 0.003066 0.003599 0.004423 0.12% Castro::finalize_do_advance() 10 0.001196 0.001654 0.001969 0.05% Castro::buildMetrics() 1 0.001791 0.001807 0.001826 0.05% Castro::post_regrid() 1 0.001516 0.001593 0.00166 0.05% Amr::InitAmr() 1 0.000276 0.0003073 0.0004535 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.484e-05 0.0001584 0.0001797 0.01% DistributionMapping::LeastUsedCPUs() 1 6.875e-06 0.0001503 0.0001717 0.00% Castro::enforce_consistent_e() 1 7.975e-05 8.621e-05 9.854e-05 0.00% FabArrayBase::getCPC() 41 6.289e-05 8.332e-05 9.686e-05 0.00% Amr::writeSmallPlotFile() 1 2.574e-05 5.313e-05 6.809e-05 0.00% Castro::enforce_speed_limit() 62 2.336e-05 2.993e-05 3.779e-05 0.00% FabArrayBase::CPC::define() 2 2.229e-05 2.513e-05 2.828e-05 0.00% Gravity::swapTimeLevels() 10 1.02e-05 1.194e-05 1.407e-05 0.00% Gravity::set_mass_offset() 10 9.159e-06 1.011e-05 1.122e-05 0.00% Castro::FluxRegCrseInit 10 6.155e-06 9.265e-06 1.073e-05 0.00% Amr::initSubcycle() 1 8.779e-06 9.333e-06 1.001e-05 0.00% Castro::create_source_corrector() 10 7.938e-06 9.099e-06 9.745e-06 0.00% Castro::retry_advance_ctu() 10 4.322e-06 5.033e-06 6.356e-06 0.00% Castro::FluxRegFineAdd() 10 1.95e-06 2.367e-06 3.213e-06 0.00% DistributionMapping::Distribute() 1 8.75e-07 1.161e-06 1.334e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-25-g6b294a5cd3e5) finalized