MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-24-g27ef4ea56945) initialized Starting run at 05:23:26 UTC on 2023-04-17. Successfully read inputs file ... Castro git describe: 23.04-15-g519fc5457 AMReX git describe: 23.04-24-g27ef4ea56 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016975903 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365816078 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350784873 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333328062 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.333696774 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.351064376 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.339000964 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312432248 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312981014 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313842947 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.314095696 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010459451 seconds Ending run at 05:23:30 UTC on 2023-04-17. Run time = 3.530695435 Run time without initialization = 3.345146511 Average number of zones advanced per microsecond: 0.784 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.529 ... 3.53 ... 3.531 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3053 2.3493 2.4031 68.06% Gravity::make_radial_gravity() 21 0.3127 0.3247 0.3379 9.57% Castro::do_advance_ctu() 10 0.01605 0.07362 0.1209 3.42% Castro::initData() 1 0.03842 0.07813 0.1168 3.31% Castro::estTimeStep() 21 0.02489 0.07251 0.1159 3.28% FabArray::setVal() 143 0.06487 0.07251 0.08445 2.39% amrex::Copy() 193 0.06211 0.07328 0.08043 2.28% FabArray::ParallelCopy_finish() 41 0.03748 0.05498 0.08009 2.27% Castro::reset_internal_energy(Fab) 1008 0.04871 0.04987 0.05168 1.46% Castro::normalize_species() 62 0.04075 0.04203 0.04354 1.23% FabArray::ParallelCopy_nowait() 41 0.03721 0.0412 0.043 1.22% StateData::FillBoundary(geom) 41 0.03287 0.03604 0.0398 1.13% FillPatchIterator::Initialize 41 0.03 0.03441 0.03757 1.06% Castro::construct_new_gravity_source() 10 0.02296 0.02669 0.03164 0.90% Gravity::interpolate_monopole_grav() 21 0.02797 0.02863 0.03056 0.87% Castro::initialize_do_advance() 10 0.01186 0.01797 0.02105 0.60% Castro::computeTemp() 63 0.01943 0.01994 0.0207 0.59% VisMF::Write(FabArray) 2 0.01321 0.01388 0.0165 0.47% FabArray::Saxpy() 20 0.01274 0.01445 0.01562 0.44% Castro::initialize_advance() 10 0.008093 0.01125 0.01386 0.39% MultiFab::contains_nan() 20 0.01148 0.01228 0.01327 0.38% FabArray::setDomainBndry() 41 0.009153 0.01128 0.01261 0.36% Castro::construct_old_gravity_source() 10 0.00752 0.01037 0.01097 0.31% Amr::writePlotFile() 2 0.008331 0.009682 0.01043 0.30% Castro::initMFs() 1 0.006885 0.007311 0.008365 0.24% main() 1 0.005055 0.006403 0.006982 0.20% StateData::define() 4 0.005682 0.00613 0.00695 0.20% Castro::construct_new_source() 50 0.005834 0.00626 0.006521 0.18% Castro::enforce_min_density() 62 0.005585 0.005977 0.006425 0.18% Castro::swap_state_time_levels() 10 0.003362 0.004375 0.004737 0.13% Gravity::get_new_grav_vector() 11 0.002895 0.003759 0.004106 0.12% Amr::coarseTimeStep() 10 0.001074 0.002124 0.002853 0.08% Gravity::get_old_grav_vector() 10 0.0018 0.002342 0.002765 0.08% Castro::buildMetrics() 1 0.001654 0.001735 0.001927 0.05% Castro::finalize_do_advance() 10 0.0006462 0.001441 0.001687 0.05% Castro::expand_state() 10 0.0006417 0.0007415 0.0008528 0.02% Amr::InitAmr() 1 0.0002669 0.0003547 0.0005014 0.01% Amr::timeStep() 10 0.00018 0.0002545 0.0004733 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002842 0.0002937 0.0003068 0.01% DistributionMapping::LeastUsedCPUs() 1 6.936e-06 0.0001802 0.0002731 0.01% Castro::clean_state() 62 0.0001393 0.0001494 0.0001697 0.00% Castro::finalize_advance() 10 9.394e-05 0.0001107 0.0001251 0.00% Castro::enforce_consistent_e() 1 7.351e-05 8.806e-05 0.0001184 0.00% StateDataPhysBCFunct::() 41 8.601e-05 9.134e-05 9.924e-05 0.00% Castro::construct_old_source() 50 4.318e-05 6.692e-05 8.426e-05 0.00% FabArray::ParallelCopy() 41 6.643e-05 7.487e-05 8.309e-05 0.00% FabArrayBase::getCPC() 41 4.118e-05 5.749e-05 8.17e-05 0.00% Castro::do_old_sources() 10 5.64e-05 6.458e-05 8.134e-05 0.00% Castro::do_new_sources() 10 5.555e-05 6.622e-05 8.061e-05 0.00% Castro::Castro() 1 5.736e-05 6.646e-05 7.647e-05 0.00% FillPatchSingleLevel 41 6.459e-05 6.952e-05 7.623e-05 0.00% Amr::FinalizeInit() 1 3.347e-06 1.241e-05 6.705e-05 0.00% Castro::advance() 10 3.481e-05 4.362e-05 6.643e-05 0.00% Amr::writeSmallPlotFile() 1 3.776e-05 5.259e-05 6.073e-05 0.00% Castro::construct_new_gravity() 10 3.636e-05 4.317e-05 5.394e-05 0.00% Castro::apply_source_to_state() 20 3.935e-05 4.437e-05 4.993e-05 0.00% Castro::subcycle_advance_ctu() 10 3.811e-05 4.309e-05 4.858e-05 0.00% Castro::construct_old_gravity() 10 3.456e-05 3.879e-05 4.27e-05 0.00% FabArrayBase::CPC::define() 2 2.186e-05 2.76e-05 3.951e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.626e-05 3.394e-05 3.918e-05 0.00% Amr::defBaseLevel() 1 1.703e-05 2.368e-05 3.295e-05 0.00% Castro::post_timestep() 10 1.635e-05 2.286e-05 3.161e-05 0.00% Castro::enforce_speed_limit() 62 2.271e-05 2.616e-05 3.131e-05 0.00% Castro::check_for_nan() 20 1.977e-05 2.272e-05 2.553e-05 0.00% Amr::initSubcycle() 1 8.813e-06 1.143e-05 1.753e-05 0.00% Gravity::swapTimeLevels() 10 1.086e-05 1.209e-05 1.425e-05 0.00% Castro::FluxRegCrseInit 10 7.119e-06 9.961e-06 1.214e-05 0.00% Castro::create_source_corrector() 10 7.28e-06 9.274e-06 1.098e-05 0.00% Gravity::set_mass_offset() 10 9.234e-06 1.031e-05 1.078e-05 0.00% Castro::computeNewDt() 9 7.941e-06 8.501e-06 9.121e-06 0.00% Castro::post_init() 1 2.737e-06 3.976e-06 8.33e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.541e-06 4.795e-06 7.43e-06 0.00% Castro::retry_advance_ctu() 10 4.493e-06 5.48e-06 6.445e-06 0.00% Amr::InitializeInit() 1 2.067e-06 2.882e-06 5.677e-06 0.00% Castro::computeInitialDt() 2 3.431e-06 4.092e-06 4.789e-06 0.00% Castro::post_regrid() 1 1.32e-06 2.586e-06 3.704e-06 0.00% Castro::FluxRegFineAdd() 10 1.935e-06 2.407e-06 2.641e-06 0.00% Amr::init() 1 1.658e-06 2.169e-06 2.454e-06 0.00% Amr::initialInit() 1 1.603e-06 1.815e-06 2.076e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.067e-06 1.295e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.529 3.53 3.531 100.00% Amr::coarseTimeStep() 10 3.328 3.328 3.328 94.25% Amr::timeStep() 10 3.315 3.316 3.317 93.95% Castro::advance() 10 3.299 3.3 3.301 93.48% Castro::subcycle_advance_ctu() 10 3.213 3.221 3.225 91.35% Castro::do_advance_ctu() 10 3.213 3.221 3.225 91.34% Castro::construct_ctu_hydro_source() 10 2.305 2.349 2.403 68.06% Gravity::make_radial_gravity() 21 0.3285 0.3416 0.3522 9.97% Gravity::get_new_grav_vector() 11 0.225 0.227 0.2287 6.48% Castro::construct_old_gravity() 10 0.1919 0.2016 0.2097 5.94% Gravity::get_old_grav_vector() 10 0.1908 0.2007 0.209 5.92% Castro::construct_new_gravity() 10 0.1993 0.2007 0.2017 5.71% FillPatchIterator::Initialize 41 0.1605 0.1782 0.1934 5.48% Amr::init() 1 0.1848 0.185 0.1851 5.24% Castro::initialize_do_advance() 10 0.1575 0.1692 0.1794 5.08% Amr::initialInit() 1 0.1678 0.1692 0.1698 4.81% FillPatchSingleLevel 41 0.118 0.1325 0.1537 4.35% Amr::InitializeInit() 1 0.06066 0.09986 0.1395 3.95% Amr::defBaseLevel() 1 0.06066 0.09986 0.1395 3.95% Castro::expand_state() 10 0.105 0.1209 0.1311 3.71% Castro::clean_state() 62 0.1149 0.1173 0.121 3.43% Castro::initData() 1 0.04212 0.08208 0.1204 3.41% FabArray::ParallelCopy() 41 0.08064 0.09635 0.1175 3.33% Castro::estTimeStep() 21 0.02489 0.07251 0.1159 3.28% Amr::FinalizeInit() 1 0.02957 0.0693 0.1089 3.08% FabArray::setVal() 143 0.06487 0.07251 0.08445 2.39% Castro::initialize_advance() 10 0.07043 0.07524 0.08364 2.37% Castro::computeInitialDt() 2 0.002006 0.04155 0.0806 2.28% amrex::Copy() 193 0.06211 0.07328 0.08043 2.28% FabArray::ParallelCopy_finish() 41 0.03748 0.05498 0.08009 2.27% Castro::do_new_sources() 10 0.06024 0.06797 0.07912 2.24% Castro::computeTemp() 63 0.06884 0.0701 0.07268 2.06% Castro::reset_internal_energy(MultiFab) 63 0.049 0.05016 0.05198 1.47% Castro::reset_internal_energy(Fab) 1008 0.04871 0.04987 0.05168 1.46% Castro::do_old_sources() 10 0.04054 0.04583 0.04681 1.33% Castro::normalize_species() 62 0.04075 0.04203 0.04354 1.23% FabArray::ParallelCopy_nowait() 41 0.03733 0.04129 0.04309 1.22% StateDataPhysBCFunct::() 41 0.03296 0.03613 0.0399 1.13% StateData::FillBoundary(geom) 41 0.03287 0.03604 0.0398 1.13% Castro::construct_new_source() 50 0.0292 0.03295 0.03805 1.08% Castro::construct_new_gravity_source() 10 0.02296 0.02669 0.03164 0.90% Gravity::interpolate_monopole_grav() 21 0.02797 0.02863 0.03056 0.87% Castro::post_init() 1 0.02589 0.02723 0.02779 0.79% Amr::writePlotFile() 2 0.02582 0.02638 0.02767 0.78% Castro::post_timestep() 10 0.01564 0.01596 0.01651 0.47% VisMF::Write(FabArray) 2 0.01321 0.01388 0.0165 0.47% Castro::apply_source_to_state() 20 0.01279 0.0145 0.01567 0.44% FabArray::Saxpy() 20 0.01274 0.01445 0.01562 0.44% Castro::check_for_nan() 20 0.01151 0.0123 0.01329 0.38% MultiFab::contains_nan() 20 0.01148 0.01228 0.01327 0.38% FabArray::setDomainBndry() 41 0.009153 0.01128 0.01261 0.36% Castro::Castro() 1 0.01089 0.0114 0.01243 0.35% Castro::construct_old_source() 50 0.007563 0.01043 0.01104 0.31% Castro::construct_old_gravity_source() 10 0.00752 0.01037 0.01097 0.31% Castro::computeNewDt() 9 0.008517 0.008529 0.008533 0.24% Castro::initMFs() 1 0.006885 0.007311 0.008365 0.24% AmrLevel::AmrLevel(dm) 1 0.005708 0.006164 0.006989 0.20% StateData::define() 4 0.005682 0.00613 0.00695 0.20% Castro::enforce_min_density() 62 0.005585 0.005977 0.006425 0.18% Castro::swap_state_time_levels() 10 0.003362 0.004375 0.004737 0.13% Castro::finalize_advance() 10 0.00309 0.003801 0.004406 0.12% Castro::buildMetrics() 1 0.001799 0.001882 0.002085 0.06% Castro::finalize_do_advance() 10 0.0006462 0.001441 0.001687 0.05% Castro::post_regrid() 1 0.001513 0.001583 0.001657 0.05% Amr::InitAmr() 1 0.0002761 0.0003661 0.0005189 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.267e-05 0.0001861 0.0002807 0.01% DistributionMapping::LeastUsedCPUs() 1 6.936e-06 0.0001802 0.0002731 0.01% FabArrayBase::getCPC() 41 6.521e-05 8.509e-05 0.0001212 0.00% Castro::enforce_consistent_e() 1 7.351e-05 8.806e-05 0.0001184 0.00% Amr::writeSmallPlotFile() 1 3.776e-05 5.259e-05 6.073e-05 0.00% FabArrayBase::CPC::define() 2 2.186e-05 2.76e-05 3.951e-05 0.00% Castro::enforce_speed_limit() 62 2.271e-05 2.616e-05 3.131e-05 0.00% Amr::initSubcycle() 1 8.813e-06 1.143e-05 1.753e-05 0.00% Gravity::swapTimeLevels() 10 1.086e-05 1.209e-05 1.425e-05 0.00% Castro::FluxRegCrseInit 10 7.119e-06 9.961e-06 1.214e-05 0.00% Castro::create_source_corrector() 10 7.28e-06 9.274e-06 1.098e-05 0.00% Gravity::set_mass_offset() 10 9.234e-06 1.031e-05 1.078e-05 0.00% Castro::retry_advance_ctu() 10 4.493e-06 5.48e-06 6.445e-06 0.00% Castro::FluxRegFineAdd() 10 1.935e-06 2.407e-06 2.641e-06 0.00% DistributionMapping::Distribute() 1 9e-07 1.067e-06 1.295e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-24-g27ef4ea56945) finalized