MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-26-gc1e8e73b63dc) initialized Starting run at 05:29:50 UTC on 2023-04-18. Successfully read inputs file ... Castro git describe: 23.04-16-gb19bc8626 AMReX git describe: 23.04-26-gc1e8e73b6 Microphysics git describe: 23.04-4-gabda4ae3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016485671 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.3787324 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350004279 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.37542785 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339412649 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.36904584 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336881731 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.319452517 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.321404383 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.320252743 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.319979032 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010624096 seconds Ending run at 05:29:54 UTC on 2023-04-18. Run time = 3.656310236 Run time without initialization = 3.448487978 Average number of zones advanced per microsecond: 0.760 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.655 ... 3.656 ... 3.656 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3379 2.3816 2.4893 68.08% Gravity::make_radial_gravity() 21 0.3239 0.3353 0.349 9.55% Castro::do_advance_ctu() 10 0.04758 0.1587 0.2049 5.60% Castro::initData() 1 0.0386 0.08134 0.1363 3.73% Castro::estTimeStep() 21 0.03653 0.08842 0.1357 3.71% amrex::Copy() 193 0.05965 0.06985 0.07864 2.15% FabArray::setVal() 143 0.0585 0.06719 0.07641 2.09% FabArray::ParallelCopy_finish() 41 0.03529 0.04599 0.07443 2.04% Castro::reset_internal_energy(Fab) 1008 0.04827 0.05037 0.05218 1.43% Castro::normalize_species() 62 0.04123 0.0424 0.04324 1.18% FabArray::ParallelCopy_nowait() 41 0.03723 0.04125 0.04321 1.18% StateData::FillBoundary(geom) 41 0.03311 0.03574 0.03833 1.05% FillPatchIterator::Initialize 41 0.02974 0.03354 0.03643 1.00% Castro::construct_new_gravity_source() 10 0.0231 0.02579 0.02918 0.80% Gravity::interpolate_monopole_grav() 21 0.02823 0.02858 0.02905 0.79% Castro::computeTemp() 63 0.0181 0.02009 0.02128 0.58% Castro::initialize_do_advance() 10 0.01273 0.01683 0.01863 0.51% VisMF::Write(FabArray) 2 0.01381 0.01473 0.0176 0.48% FabArray::Saxpy() 20 0.01226 0.01383 0.0148 0.40% Castro::initialize_advance() 10 0.004046 0.009997 0.0132 0.36% MultiFab::contains_nan() 20 0.01121 0.01218 0.01311 0.36% FabArray::setDomainBndry() 41 0.008993 0.01113 0.01261 0.34% Amr::writePlotFile() 2 0.007015 0.00999 0.01092 0.30% Castro::construct_old_gravity_source() 10 0.007493 0.01025 0.01081 0.30% Castro::initMFs() 1 0.006991 0.007454 0.008701 0.24% main() 1 0.00495 0.005775 0.00665 0.18% StateData::define() 4 0.005715 0.005949 0.006597 0.18% Castro::construct_new_source() 50 0.005619 0.006191 0.006461 0.18% Castro::enforce_min_density() 62 0.005649 0.005953 0.006323 0.17% Castro::swap_state_time_levels() 10 0.003413 0.004637 0.005391 0.15% Gravity::get_new_grav_vector() 11 0.002923 0.003613 0.00404 0.11% Amr::coarseTimeStep() 10 0.001165 0.002232 0.002833 0.08% Gravity::get_old_grav_vector() 10 0.001782 0.002302 0.002685 0.07% Castro::buildMetrics() 1 0.001621 0.001699 0.001892 0.05% Castro::finalize_do_advance() 10 0.0006427 0.001478 0.001799 0.05% Castro::expand_state() 10 0.0007053 0.0007969 0.0008915 0.02% Amr::InitAmr() 1 0.0002794 0.0003101 0.0004688 0.01% Amr::timeStep() 10 0.0001664 0.0002283 0.0004353 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002773 0.0002913 0.0003047 0.01% DistributionMapping::LeastUsedCPUs() 1 7.684e-06 0.0001673 0.0001966 0.01% Castro::clean_state() 62 0.0001344 0.00016 0.0001851 0.01% Castro::finalize_advance() 10 7.437e-05 0.0001072 0.0001386 0.00% StateDataPhysBCFunct::() 41 7.18e-05 8.875e-05 0.0001222 0.00% Castro::enforce_consistent_e() 1 7.711e-05 8.713e-05 0.0001016 0.00% Castro::Castro() 1 5.705e-05 7.166e-05 9.212e-05 0.00% FabArray::ParallelCopy() 41 6.347e-05 7.241e-05 8.061e-05 0.00% Castro::do_old_sources() 10 4.703e-05 6.622e-05 8.011e-05 0.00% Castro::construct_old_source() 50 4.242e-05 6.259e-05 7.87e-05 0.00% FillPatchSingleLevel 41 5.674e-05 6.914e-05 7.718e-05 0.00% Castro::do_new_sources() 10 4.977e-05 6.573e-05 7.453e-05 0.00% Amr::FinalizeInit() 1 3.7e-06 1.327e-05 6.861e-05 0.00% FabArrayBase::getCPC() 41 4.643e-05 5.523e-05 6.819e-05 0.00% Amr::writeSmallPlotFile() 1 2.739e-05 4.875e-05 6.249e-05 0.00% Castro::subcycle_advance_ctu() 10 3.59e-05 4.556e-05 5.627e-05 0.00% Castro::construct_new_gravity() 10 3.43e-05 3.854e-05 5.454e-05 0.00% Castro::apply_source_to_state() 20 3.327e-05 4.303e-05 4.974e-05 0.00% Castro::construct_old_gravity() 10 3.307e-05 3.913e-05 4.912e-05 0.00% Castro::advance() 10 3.534e-05 3.983e-05 4.561e-05 0.00% Amr::defBaseLevel() 1 2.044e-05 3.166e-05 4.179e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.605e-05 2.23e-05 3.438e-05 0.00% Castro::enforce_speed_limit() 62 2.318e-05 2.597e-05 3.132e-05 0.00% FabArrayBase::CPC::define() 2 1.986e-05 2.471e-05 2.752e-05 0.00% Castro::check_for_nan() 20 2.042e-05 2.255e-05 2.428e-05 0.00% Castro::post_timestep() 10 1.347e-05 1.55e-05 1.814e-05 0.00% Gravity::swapTimeLevels() 10 7.35e-06 1.157e-05 1.282e-05 0.00% Gravity::set_mass_offset() 10 8.559e-06 1.043e-05 1.255e-05 0.00% Castro::FluxRegCrseInit 10 7.249e-06 9.615e-06 1.175e-05 0.00% Amr::initSubcycle() 1 8.849e-06 9.764e-06 1.086e-05 0.00% Castro::create_source_corrector() 10 6.456e-06 8.918e-06 1.069e-05 0.00% Castro::computeNewDt() 9 7.914e-06 8.535e-06 9.552e-06 0.00% Castro::post_regrid() 1 1.915e-06 3.678e-06 9.428e-06 0.00% Castro::post_init() 1 3.327e-06 4.484e-06 9.293e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.761e-06 5.459e-06 9.049e-06 0.00% Castro::computeInitialDt() 2 4.141e-06 4.828e-06 6.402e-06 0.00% Castro::retry_advance_ctu() 10 4.816e-06 5.347e-06 6.226e-06 0.00% Amr::InitializeInit() 1 2.268e-06 3.101e-06 5.59e-06 0.00% Amr::init() 1 2.015e-06 2.33e-06 2.977e-06 0.00% Castro::FluxRegFineAdd() 10 2.04e-06 2.372e-06 2.897e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 1.139e-06 1.802e-06 0.00% Amr::initialInit() 1 1.117e-06 1.542e-06 1.776e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.655 3.656 3.656 100.00% Amr::coarseTimeStep() 10 3.431 3.431 3.431 93.85% Amr::timeStep() 10 3.419 3.419 3.42 93.54% Castro::advance() 10 3.402 3.403 3.404 93.09% Castro::subcycle_advance_ctu() 10 3.322 3.329 3.341 91.38% Castro::do_advance_ctu() 10 3.322 3.329 3.341 91.38% Castro::construct_ctu_hydro_source() 10 2.338 2.382 2.489 68.08% Gravity::make_radial_gravity() 21 0.3394 0.3513 0.3628 9.92% Gravity::get_new_grav_vector() 11 0.2253 0.2281 0.23 6.29% Castro::construct_old_gravity() 10 0.1961 0.2046 0.2144 5.86% Gravity::get_old_grav_vector() 10 0.1954 0.2039 0.2138 5.85% Amr::init() 1 0.2072 0.2074 0.2074 5.67% Castro::construct_new_gravity() 10 0.1989 0.2009 0.2021 5.53% Amr::initialInit() 1 0.1905 0.1908 0.1912 5.23% FillPatchIterator::Initialize 41 0.1542 0.168 0.1859 5.08% Castro::initialize_do_advance() 10 0.1541 0.1632 0.1706 4.66% Amr::InitializeInit() 1 0.06008 0.1031 0.1596 4.37% Amr::defBaseLevel() 1 0.06008 0.1031 0.1596 4.37% FillPatchSingleLevel 41 0.1143 0.1233 0.1471 4.02% Castro::initData() 1 0.04273 0.08536 0.1405 3.84% Castro::estTimeStep() 21 0.03653 0.08842 0.1357 3.71% Amr::FinalizeInit() 1 0.03156 0.08766 0.1304 3.57% Castro::expand_state() 10 0.1046 0.116 0.1249 3.42% Castro::clean_state() 62 0.1152 0.1183 0.1219 3.33% FabArray::ParallelCopy() 41 0.07763 0.0874 0.1118 3.06% Castro::computeInitialDt() 2 0.002357 0.0589 0.1019 2.79% amrex::Copy() 193 0.05965 0.06985 0.07864 2.15% Castro::initialize_advance() 10 0.05743 0.07027 0.07756 2.12% FabArray::setVal() 143 0.0585 0.06719 0.07641 2.09% Castro::do_new_sources() 10 0.06034 0.06553 0.07477 2.04% FabArray::ParallelCopy_finish() 41 0.03529 0.04599 0.07443 2.04% Castro::computeTemp() 63 0.06856 0.07075 0.07353 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04856 0.05066 0.05247 1.44% Castro::reset_internal_energy(Fab) 1008 0.04827 0.05037 0.05218 1.43% Castro::do_old_sources() 10 0.04045 0.04545 0.04669 1.28% FabArray::ParallelCopy_nowait() 41 0.0373 0.04133 0.04328 1.18% Castro::normalize_species() 62 0.04123 0.0424 0.04324 1.18% StateDataPhysBCFunct::() 41 0.0332 0.03583 0.03841 1.05% StateData::FillBoundary(geom) 41 0.03311 0.03574 0.03833 1.05% Castro::construct_new_source() 50 0.02928 0.03198 0.03564 0.97% Castro::construct_new_gravity_source() 10 0.0231 0.02579 0.02918 0.80% Gravity::interpolate_monopole_grav() 21 0.02823 0.02858 0.02905 0.79% Castro::post_init() 1 0.02717 0.02821 0.02857 0.78% Amr::writePlotFile() 2 0.02686 0.02729 0.02757 0.75% VisMF::Write(FabArray) 2 0.01381 0.01473 0.0176 0.48% Castro::post_timestep() 10 0.0157 0.01599 0.01646 0.45% Castro::apply_source_to_state() 20 0.0123 0.01387 0.01485 0.41% FabArray::Saxpy() 20 0.01226 0.01383 0.0148 0.40% Castro::check_for_nan() 20 0.01123 0.0122 0.01314 0.36% MultiFab::contains_nan() 20 0.01121 0.01218 0.01311 0.36% FabArray::setDomainBndry() 41 0.008993 0.01113 0.01261 0.34% Castro::Castro() 1 0.01115 0.01156 0.01234 0.34% Castro::construct_old_source() 50 0.007536 0.01031 0.01087 0.30% Castro::construct_old_gravity_source() 10 0.007493 0.01025 0.01081 0.30% Castro::initMFs() 1 0.006991 0.007454 0.008701 0.24% Castro::computeNewDt() 9 0.008621 0.008626 0.008632 0.24% AmrLevel::AmrLevel(dm) 1 0.005733 0.005971 0.006615 0.18% StateData::define() 4 0.005715 0.005949 0.006597 0.18% Castro::enforce_min_density() 62 0.005649 0.005953 0.006323 0.17% Castro::swap_state_time_levels() 10 0.003413 0.004637 0.005391 0.15% Castro::finalize_advance() 10 0.003046 0.003444 0.004005 0.11% Castro::post_regrid() 1 0.001536 0.001754 0.002602 0.07% Castro::buildMetrics() 1 0.001758 0.001846 0.002066 0.06% Castro::finalize_do_advance() 10 0.0006427 0.001478 0.001799 0.05% Amr::InitAmr() 1 0.0002886 0.0003198 0.0004797 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.276e-05 0.0001739 0.0002046 0.01% DistributionMapping::LeastUsedCPUs() 1 7.684e-06 0.0001673 0.0001966 0.01% Castro::enforce_consistent_e() 1 7.711e-05 8.713e-05 0.0001016 0.00% FabArrayBase::getCPC() 41 6.788e-05 7.994e-05 9.299e-05 0.00% Amr::writeSmallPlotFile() 1 2.739e-05 4.875e-05 6.249e-05 0.00% Castro::enforce_speed_limit() 62 2.318e-05 2.597e-05 3.132e-05 0.00% FabArrayBase::CPC::define() 2 1.986e-05 2.471e-05 2.752e-05 0.00% Gravity::swapTimeLevels() 10 7.35e-06 1.157e-05 1.282e-05 0.00% Gravity::set_mass_offset() 10 8.559e-06 1.043e-05 1.255e-05 0.00% Castro::FluxRegCrseInit 10 7.249e-06 9.615e-06 1.175e-05 0.00% Amr::initSubcycle() 1 8.849e-06 9.764e-06 1.086e-05 0.00% Castro::create_source_corrector() 10 6.456e-06 8.918e-06 1.069e-05 0.00% Castro::retry_advance_ctu() 10 4.816e-06 5.347e-06 6.226e-06 0.00% Castro::FluxRegFineAdd() 10 2.04e-06 2.372e-06 2.897e-06 0.00% DistributionMapping::Distribute() 1 8.64e-07 1.139e-06 1.802e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-26-gc1e8e73b63dc) finalized