MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-31-g6a85487dce1b) initialized Starting run at 05:35:49 UTC on 2023-04-25. Successfully read inputs file ... Castro git describe: 23.04-16-gb19bc8626 AMReX git describe: 23.04-31-g6a85487dc Microphysics git describe: 23.04-5-g55ce5a0f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015667029 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.362568766 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.356425191 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333897909 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336388819 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.372903807 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.347345368 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.313823023 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315162977 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.312275482 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.312434083 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01068879 seconds Ending run at 05:35:53 UTC on 2023-04-25. Run time = 3.586842467 Run time without initialization = 3.381427311 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.586 ... 3.587 ... 3.587 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2878 2.3640 2.4326 67.82% Gravity::make_radial_gravity() 21 0.3136 0.3292 0.345 9.62% Castro::do_advance_ctu() 10 0.01806 0.08846 0.1661 4.63% Castro::initData() 1 0.04039 0.08308 0.1326 3.70% Castro::estTimeStep() 21 0.02216 0.087 0.1205 3.36% FabArray::ParallelCopy_finish() 41 0.04033 0.05624 0.0934 2.60% FabArray::setVal() 143 0.06171 0.07057 0.08534 2.38% amrex::Copy() 193 0.06005 0.0728 0.08145 2.27% Castro::reset_internal_energy(Fab) 1008 0.04821 0.05015 0.05271 1.47% FabArray::ParallelCopy_nowait() 41 0.03683 0.04212 0.04509 1.26% Castro::normalize_species() 62 0.04148 0.04227 0.04376 1.22% StateData::FillBoundary(geom) 41 0.03323 0.03656 0.04064 1.13% FillPatchIterator::Initialize 41 0.02869 0.03481 0.03713 1.04% Castro::construct_new_gravity_source() 10 0.02292 0.02553 0.02988 0.83% Gravity::interpolate_monopole_grav() 21 0.02799 0.02823 0.02853 0.80% Castro::initialize_do_advance() 10 0.01181 0.01852 0.02196 0.61% Castro::computeTemp() 63 0.01885 0.01988 0.02065 0.58% VisMF::Write(FabArray) 2 0.01316 0.01435 0.01712 0.48% FabArray::Saxpy() 20 0.0127 0.01399 0.01487 0.41% Castro::initialize_advance() 10 0.004064 0.01039 0.01445 0.40% MultiFab::contains_nan() 20 0.01131 0.01231 0.01352 0.38% FabArray::setDomainBndry() 41 0.008761 0.01177 0.01309 0.37% Amr::writePlotFile() 2 0.006754 0.009519 0.01185 0.33% Castro::initMFs() 1 0.007072 0.008168 0.01115 0.31% Castro::construct_old_gravity_source() 10 0.007387 0.0104 0.01111 0.31% StateData::define() 4 0.005905 0.006625 0.008686 0.24% main() 1 0.006091 0.006603 0.006851 0.19% Gravity::get_new_grav_vector() 11 0.002824 0.004339 0.006504 0.18% Castro::construct_new_source() 50 0.00571 0.006194 0.006409 0.18% Castro::enforce_min_density() 62 0.005723 0.006003 0.006362 0.18% Castro::swap_state_time_levels() 10 0.003393 0.004502 0.005167 0.14% Amr::coarseTimeStep() 10 0.001427 0.002732 0.0038 0.11% Gravity::get_old_grav_vector() 10 0.001697 0.002411 0.00274 0.08% Castro::buildMetrics() 1 0.001679 0.001882 0.002479 0.07% Castro::finalize_do_advance() 10 0.0008042 0.001597 0.001935 0.05% Castro::expand_state() 10 0.0007006 0.0008643 0.001072 0.03% Amr::InitAmr() 1 0.0002845 0.0003561 0.0005022 0.01% Amr::timeStep() 10 0.0001756 0.0002441 0.0004076 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000289 0.0003013 0.0003161 0.01% DistributionMapping::LeastUsedCPUs() 1 7.279e-06 0.0001871 0.0002643 0.01% Castro::clean_state() 62 0.0001429 0.0001729 0.0001922 0.01% Castro::finalize_advance() 10 9.418e-05 0.0001076 0.000152 0.00% StateDataPhysBCFunct::() 41 8.217e-05 0.0001014 0.0001436 0.00% Castro::enforce_consistent_e() 1 8.406e-05 8.963e-05 9.78e-05 0.00% Castro::construct_old_source() 50 4.76e-05 7.005e-05 9.112e-05 0.00% Castro::Castro() 1 5.828e-05 7.063e-05 8.943e-05 0.00% Castro::do_new_sources() 10 4.719e-05 6.504e-05 8.915e-05 0.00% Amr::FinalizeInit() 1 3.505e-06 1.444e-05 7.895e-05 0.00% FabArray::ParallelCopy() 41 6.177e-05 7.178e-05 7.838e-05 0.00% FillPatchSingleLevel 41 6.427e-05 7.092e-05 7.609e-05 0.00% Castro::do_old_sources() 10 4.72e-05 6.135e-05 7.24e-05 0.00% FabArrayBase::getCPC() 41 4.675e-05 6.112e-05 6.938e-05 0.00% Amr::writeSmallPlotFile() 1 2.501e-05 5.392e-05 6.646e-05 0.00% Castro::subcycle_advance_ctu() 10 3.986e-05 4.406e-05 5.267e-05 0.00% Castro::construct_new_gravity() 10 3.63e-05 4.069e-05 4.999e-05 0.00% Castro::apply_source_to_state() 20 4.05e-05 4.384e-05 4.893e-05 0.00% Castro::advance() 10 3.402e-05 3.792e-05 4.568e-05 0.00% Castro::construct_old_gravity() 10 3.279e-05 3.913e-05 4.468e-05 0.00% Castro::enforce_speed_limit() 62 2.489e-05 3.113e-05 3.935e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.874e-05 2.673e-05 3.446e-05 0.00% Amr::defBaseLevel() 1 1.744e-05 2.648e-05 3.33e-05 0.00% FabArrayBase::CPC::define() 2 2.149e-05 2.533e-05 3.121e-05 0.00% Castro::check_for_nan() 20 2.024e-05 2.231e-05 2.46e-05 0.00% Castro::post_timestep() 10 1.348e-05 1.516e-05 1.924e-05 0.00% Amr::initSubcycle() 1 8.714e-06 1.101e-05 1.737e-05 0.00% Gravity::swapTimeLevels() 10 1.127e-05 1.298e-05 1.565e-05 0.00% Castro::computeNewDt() 9 1.017e-05 1.201e-05 1.363e-05 0.00% Gravity::set_mass_offset() 10 1.088e-05 1.192e-05 1.356e-05 0.00% Castro::create_source_corrector() 10 7.603e-06 9.135e-06 1.022e-05 0.00% Castro::post_init() 1 3.092e-06 5.023e-06 9.98e-06 0.00% Castro::post_regrid() 1 1.971e-06 3.443e-06 9.583e-06 0.00% Castro::FluxRegCrseInit 10 6.486e-06 8.532e-06 9.38e-06 0.00% Castro::retry_advance_ctu() 10 4.716e-06 5.643e-06 6.817e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.741e-06 5.077e-06 6.778e-06 0.00% Castro::computeInitialDt() 2 2.961e-06 4.349e-06 6.504e-06 0.00% Amr::InitializeInit() 1 1.824e-06 2.723e-06 4.899e-06 0.00% Castro::FluxRegFineAdd() 10 2.155e-06 2.346e-06 2.706e-06 0.00% Amr::init() 1 1.951e-06 2.228e-06 2.591e-06 0.00% Amr::initialInit() 1 1.378e-06 1.871e-06 2.394e-06 0.00% DistributionMapping::Distribute() 1 8.24e-07 1.099e-06 1.338e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.586 3.587 3.587 100.00% Amr::coarseTimeStep() 10 3.364 3.364 3.364 93.78% Amr::timeStep() 10 3.351 3.352 3.353 93.48% Castro::advance() 10 3.335 3.336 3.336 93.01% Castro::subcycle_advance_ctu() 10 3.25 3.26 3.271 91.21% Castro::do_advance_ctu() 10 3.25 3.26 3.271 91.20% Castro::construct_ctu_hydro_source() 10 2.288 2.364 2.433 67.82% Gravity::make_radial_gravity() 21 0.3294 0.3459 0.358 9.98% Gravity::get_new_grav_vector() 11 0.2239 0.2282 0.2302 6.42% Castro::construct_old_gravity() 10 0.191 0.2019 0.2099 5.85% Gravity::get_old_grav_vector() 10 0.1903 0.2012 0.2093 5.84% Amr::init() 1 0.2047 0.2049 0.205 5.71% Castro::construct_new_gravity() 10 0.2 0.2036 0.2046 5.70% FillPatchIterator::Initialize 41 0.1595 0.1818 0.2037 5.68% Amr::initialInit() 1 0.1888 0.1892 0.1895 5.28% Castro::initialize_do_advance() 10 0.1572 0.175 0.1841 5.13% FillPatchSingleLevel 41 0.1172 0.1353 0.1662 4.63% Amr::InitializeInit() 1 0.06189 0.1063 0.1605 4.48% Amr::defBaseLevel() 1 0.06189 0.1063 0.1605 4.48% Castro::expand_state() 10 0.1058 0.1262 0.1378 3.84% Castro::initData() 1 0.04438 0.08701 0.1363 3.80% FabArray::ParallelCopy() 41 0.08235 0.09853 0.1304 3.64% Amr::FinalizeInit() 1 0.02868 0.0829 0.1271 3.54% Castro::clean_state() 62 0.1146 0.1178 0.1218 3.40% Castro::estTimeStep() 21 0.02216 0.087 0.1205 3.36% Castro::computeInitialDt() 2 0.002026 0.05642 0.1008 2.81% FabArray::ParallelCopy_finish() 41 0.04033 0.05624 0.0934 2.60% FabArray::setVal() 143 0.06171 0.07057 0.08534 2.38% Castro::initialize_advance() 10 0.05972 0.07162 0.08168 2.28% amrex::Copy() 193 0.06005 0.0728 0.08145 2.27% Castro::do_new_sources() 10 0.05987 0.06702 0.07775 2.17% Castro::computeTemp() 63 0.06756 0.07033 0.07366 2.05% Castro::reset_internal_energy(MultiFab) 63 0.04853 0.05045 0.05301 1.48% Castro::reset_internal_energy(Fab) 1008 0.04821 0.05015 0.05271 1.47% Castro::do_old_sources() 10 0.03965 0.04538 0.04647 1.30% FabArray::ParallelCopy_nowait() 41 0.03692 0.04221 0.04517 1.26% Castro::normalize_species() 62 0.04148 0.04227 0.04376 1.22% StateDataPhysBCFunct::() 41 0.03331 0.03666 0.04078 1.14% StateData::FillBoundary(geom) 41 0.03323 0.03656 0.04064 1.13% Castro::construct_new_source() 50 0.02913 0.03172 0.03606 1.01% Castro::construct_new_gravity_source() 10 0.02292 0.02553 0.02988 0.83% Gravity::interpolate_monopole_grav() 21 0.02799 0.02823 0.02853 0.80% Amr::writePlotFile() 2 0.02625 0.02645 0.0267 0.74% Castro::post_init() 1 0.02489 0.02585 0.02619 0.73% VisMF::Write(FabArray) 2 0.01316 0.01435 0.01712 0.48% Castro::post_timestep() 10 0.01552 0.01587 0.01678 0.47% Castro::Castro() 1 0.0113 0.01243 0.01546 0.43% Castro::apply_source_to_state() 20 0.01274 0.01404 0.01492 0.42% FabArray::Saxpy() 20 0.0127 0.01399 0.01487 0.41% Castro::check_for_nan() 20 0.01133 0.01233 0.01355 0.38% MultiFab::contains_nan() 20 0.01131 0.01231 0.01352 0.38% FabArray::setDomainBndry() 41 0.008761 0.01177 0.01309 0.37% Castro::construct_old_source() 50 0.007435 0.01047 0.0112 0.31% Castro::initMFs() 1 0.007072 0.008168 0.01115 0.31% Castro::construct_old_gravity_source() 10 0.007387 0.0104 0.01111 0.31% AmrLevel::AmrLevel(dm) 1 0.005931 0.006652 0.008713 0.24% StateData::define() 4 0.005905 0.006625 0.008686 0.24% Castro::computeNewDt() 9 0.008396 0.008403 0.00841 0.23% Castro::enforce_min_density() 62 0.005723 0.006003 0.006362 0.18% Castro::swap_state_time_levels() 10 0.003393 0.004502 0.005167 0.14% Castro::finalize_advance() 10 0.002923 0.003649 0.004539 0.13% Castro::buildMetrics() 1 0.001812 0.00204 0.002704 0.08% Castro::post_regrid() 1 0.001569 0.0017 0.002391 0.07% Castro::finalize_do_advance() 10 0.0008042 0.001597 0.001935 0.05% Amr::InitAmr() 1 0.0002934 0.0003672 0.0005195 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.281e-05 0.0001933 0.0002722 0.01% DistributionMapping::LeastUsedCPUs() 1 7.279e-06 0.0001871 0.0002643 0.01% Castro::enforce_consistent_e() 1 8.406e-05 8.963e-05 9.78e-05 0.00% FabArrayBase::getCPC() 41 7.047e-05 8.645e-05 9.489e-05 0.00% Amr::writeSmallPlotFile() 1 2.501e-05 5.392e-05 6.646e-05 0.00% Castro::enforce_speed_limit() 62 2.489e-05 3.113e-05 3.935e-05 0.00% FabArrayBase::CPC::define() 2 2.149e-05 2.533e-05 3.121e-05 0.00% Amr::initSubcycle() 1 8.714e-06 1.101e-05 1.737e-05 0.00% Gravity::swapTimeLevels() 10 1.127e-05 1.298e-05 1.565e-05 0.00% Gravity::set_mass_offset() 10 1.088e-05 1.192e-05 1.356e-05 0.00% Castro::create_source_corrector() 10 7.603e-06 9.135e-06 1.022e-05 0.00% Castro::FluxRegCrseInit 10 6.486e-06 8.532e-06 9.38e-06 0.00% Castro::retry_advance_ctu() 10 4.716e-06 5.643e-06 6.817e-06 0.00% Castro::FluxRegFineAdd() 10 2.155e-06 2.346e-06 2.706e-06 0.00% DistributionMapping::Distribute() 1 8.24e-07 1.099e-06 1.338e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 35 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-31-g6a85487dce1b) finalized