MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-33-g9adadfb8d881) initialized Starting run at 05:37:32 UTC on 2023-04-26. Successfully read inputs file ... Castro git describe: 23.04-16-gb19bc8626 AMReX git describe: 23.04-33-g9adadfb8d Microphysics git describe: 23.04-5-g55ce5a0f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015386069 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.358098989 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.369686233 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.339290099 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334749211 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.35734924 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349862389 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.317539293 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315669217 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.31551597 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315231058 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.04305775 seconds Ending run at 05:37:36 UTC on 2023-04-26. Run time = 3.617365317 Run time without initialization = 3.423688039 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.616 ... 3.617 ... 3.617 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2691 2.3545 2.4105 66.64% Gravity::make_radial_gravity() 21 0.3245 0.3346 0.3524 9.74% Castro::do_advance_ctu() 10 0.03142 0.08815 0.177 4.89% Castro::initData() 1 0.04137 0.07964 0.1262 3.49% Castro::estTimeStep() 21 0.03916 0.08342 0.108 2.98% FabArray::ParallelCopy_finish() 41 0.035 0.06126 0.09948 2.75% FabArray::setVal() 143 0.06261 0.07259 0.08756 2.42% amrex::Copy() 193 0.0618 0.07426 0.08481 2.34% Castro::reset_internal_energy(Fab) 1008 0.04921 0.04991 0.0507 1.40% Castro::normalize_species() 62 0.04121 0.04259 0.04503 1.24% Amr::writePlotFile() 2 0.03948 0.04256 0.04479 1.24% FabArray::ParallelCopy_nowait() 41 0.0366 0.0419 0.04346 1.20% FillPatchIterator::Initialize 41 0.02849 0.03556 0.03999 1.11% StateData::FillBoundary(geom) 41 0.03149 0.03607 0.03939 1.09% Gravity::interpolate_monopole_grav() 21 0.028 0.02917 0.0318 0.88% Castro::construct_new_gravity_source() 10 0.02263 0.02627 0.03127 0.86% Castro::initialize_do_advance() 10 0.0118 0.01874 0.02323 0.64% Castro::computeTemp() 63 0.01962 0.02004 0.02077 0.57% VisMF::Write(FabArray) 2 0.01275 0.01378 0.01648 0.46% FabArray::Saxpy() 20 0.01264 0.01472 0.01552 0.43% Castro::initialize_advance() 10 0.004126 0.0103 0.01438 0.40% FabArray::setDomainBndry() 41 0.008573 0.01165 0.01287 0.36% MultiFab::contains_nan() 20 0.01126 0.012 0.01282 0.35% Castro::construct_old_gravity_source() 10 0.00763 0.0105 0.01124 0.31% Castro::initMFs() 1 0.007044 0.007516 0.0088 0.24% main() 1 0.005733 0.006525 0.006864 0.19% StateData::define() 4 0.006014 0.006262 0.006794 0.19% Castro::construct_new_source() 50 0.005722 0.006219 0.006472 0.18% Castro::enforce_min_density() 62 0.00563 0.006044 0.006468 0.18% Castro::swap_state_time_levels() 10 0.003427 0.004518 0.004892 0.14% Gravity::get_new_grav_vector() 11 0.003005 0.00378 0.004238 0.12% Amr::coarseTimeStep() 10 0.001187 0.002718 0.003695 0.10% Gravity::get_old_grav_vector() 10 0.001828 0.002429 0.002879 0.08% Castro::finalize_do_advance() 10 0.0005947 0.001758 0.002214 0.06% Castro::buildMetrics() 1 0.001649 0.001731 0.001911 0.05% Castro::expand_state() 10 0.0006468 0.0009688 0.001182 0.03% Amr::InitAmr() 1 0.0002922 0.0003264 0.0004503 0.01% Amr::timeStep() 10 0.0001802 0.000235 0.0004283 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002846 0.0002969 0.0003149 0.01% DistributionMapping::LeastUsedCPUs() 1 6.627e-06 0.0001267 0.0001612 0.00% Castro::clean_state() 62 0.0001385 0.0001486 0.0001582 0.00% StateDataPhysBCFunct::() 41 9.495e-05 0.0001084 0.0001349 0.00% Castro::enforce_consistent_e() 1 8.29e-05 9.234e-05 0.0001181 0.00% Castro::finalize_advance() 10 9.346e-05 0.0001054 0.0001131 0.00% Castro::Castro() 1 5.712e-05 7.231e-05 9.48e-05 0.00% Amr::FinalizeInit() 1 3.578e-06 1.433e-05 8.558e-05 0.00% Castro::do_new_sources() 10 5.605e-05 6.493e-05 8.404e-05 0.00% FillPatchSingleLevel 41 6.928e-05 7.369e-05 7.895e-05 0.00% Castro::construct_old_source() 50 4.475e-05 6.636e-05 7.761e-05 0.00% Castro::do_old_sources() 10 4.845e-05 6.394e-05 7.668e-05 0.00% FabArrayBase::getCPC() 41 4.451e-05 5.854e-05 7.464e-05 0.00% FabArray::ParallelCopy() 41 6.438e-05 6.977e-05 7.291e-05 0.00% Castro::subcycle_advance_ctu() 10 4.068e-05 4.707e-05 6.419e-05 0.00% Amr::writeSmallPlotFile() 1 2.781e-05 4.604e-05 6.17e-05 0.00% Castro::advance() 10 3.552e-05 4.397e-05 5.959e-05 0.00% Castro::apply_source_to_state() 20 4.281e-05 4.838e-05 5.337e-05 0.00% Castro::construct_new_gravity() 10 3.319e-05 4.222e-05 5.081e-05 0.00% Castro::construct_old_gravity() 10 3.755e-05 4.131e-05 4.799e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.878e-05 2.747e-05 3.918e-05 0.00% Castro::enforce_speed_limit() 62 2.364e-05 2.599e-05 2.795e-05 0.00% FabArrayBase::CPC::define() 2 2.07e-05 2.268e-05 2.571e-05 0.00% Castro::check_for_nan() 20 2.13e-05 2.264e-05 2.475e-05 0.00% Amr::defBaseLevel() 1 1.687e-05 1.971e-05 2.457e-05 0.00% Castro::post_timestep() 10 1.317e-05 1.635e-05 2.128e-05 0.00% Amr::initSubcycle() 1 8.926e-06 1.072e-05 1.934e-05 0.00% Gravity::swapTimeLevels() 10 8.119e-06 1.341e-05 1.573e-05 0.00% Castro::retry_advance_ctu() 10 4.556e-06 6.455e-06 1.492e-05 0.00% Castro::computeNewDt() 9 9.824e-06 1.183e-05 1.391e-05 0.00% Gravity::set_mass_offset() 10 9.932e-06 1.166e-05 1.36e-05 0.00% Castro::create_source_corrector() 10 6.125e-06 9.273e-06 1.295e-05 0.00% Castro::FluxRegCrseInit 10 6.721e-06 8.059e-06 9.555e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.661e-06 5.461e-06 6.78e-06 0.00% Amr::InitializeInit() 1 2.14e-06 2.639e-06 5.16e-06 0.00% Castro::computeInitialDt() 2 3.204e-06 3.692e-06 4.281e-06 0.00% Castro::post_init() 1 2.807e-06 3.268e-06 3.981e-06 0.00% Castro::post_regrid() 1 1.735e-06 2.442e-06 2.982e-06 0.00% Castro::FluxRegFineAdd() 10 1.734e-06 2.146e-06 2.695e-06 0.00% Amr::init() 1 1.802e-06 2.174e-06 2.663e-06 0.00% Amr::initialInit() 1 1.22e-06 1.687e-06 2.463e-06 0.00% DistributionMapping::Distribute() 1 8.03e-07 1.136e-06 1.69e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.616 3.617 3.617 100.00% Amr::coarseTimeStep() 10 3.374 3.374 3.374 93.27% Amr::timeStep() 10 3.36 3.361 3.363 92.96% Castro::advance() 10 3.344 3.345 3.346 92.50% Castro::subcycle_advance_ctu() 10 3.257 3.268 3.276 90.56% Castro::do_advance_ctu() 10 3.257 3.268 3.276 90.56% Castro::construct_ctu_hydro_source() 10 2.269 2.354 2.411 66.64% Gravity::make_radial_gravity() 21 0.3417 0.3519 0.3655 10.10% Gravity::get_new_grav_vector() 11 0.2306 0.2313 0.232 6.41% Castro::construct_old_gravity() 10 0.2013 0.2093 0.2206 6.10% Gravity::get_old_grav_vector() 10 0.2 0.2085 0.2199 6.08% Castro::construct_new_gravity() 10 0.2062 0.2069 0.2077 5.74% FillPatchIterator::Initialize 41 0.1655 0.1868 0.205 5.67% Amr::init() 1 0.1931 0.1932 0.1932 5.34% Castro::initialize_do_advance() 10 0.1614 0.1771 0.1893 5.23% Amr::initialInit() 1 0.1771 0.1774 0.1777 4.91% FillPatchSingleLevel 41 0.1137 0.1396 0.1679 4.64% Amr::InitializeInit() 1 0.06297 0.1018 0.1496 4.14% Amr::defBaseLevel() 1 0.06297 0.1018 0.1496 4.14% Castro::expand_state() 10 0.1099 0.1278 0.1412 3.90% FabArray::ParallelCopy() 41 0.07779 0.1033 0.1362 3.77% Castro::initData() 1 0.04552 0.08371 0.1301 3.60% Castro::clean_state() 62 0.1151 0.1181 0.1219 3.37% Amr::FinalizeInit() 1 0.02753 0.07558 0.1146 3.17% Castro::estTimeStep() 21 0.03916 0.08342 0.108 2.98% FabArray::ParallelCopy_finish() 41 0.035 0.06126 0.09948 2.75% Castro::computeInitialDt() 2 0.001983 0.04976 0.08849 2.45% FabArray::setVal() 143 0.06261 0.07259 0.08756 2.42% amrex::Copy() 193 0.0618 0.07426 0.08481 2.34% Castro::initialize_advance() 10 0.06422 0.07361 0.08424 2.33% Castro::do_new_sources() 10 0.06039 0.0691 0.0823 2.28% Castro::computeTemp() 63 0.06916 0.07024 0.07121 1.97% Amr::writePlotFile() 2 0.05868 0.05894 0.05921 1.64% Castro::reset_internal_energy(MultiFab) 63 0.0495 0.05021 0.05099 1.41% Castro::reset_internal_energy(Fab) 1008 0.04921 0.04991 0.0507 1.40% Castro::do_old_sources() 10 0.04069 0.04557 0.04656 1.29% Castro::normalize_species() 62 0.04121 0.04259 0.04503 1.24% FabArray::ParallelCopy_nowait() 41 0.03669 0.04198 0.04356 1.20% StateDataPhysBCFunct::() 41 0.03161 0.03618 0.03949 1.09% StateData::FillBoundary(geom) 41 0.03149 0.03607 0.03939 1.09% Castro::construct_new_source() 50 0.02877 0.03249 0.03756 1.04% Gravity::interpolate_monopole_grav() 21 0.028 0.02917 0.0318 0.88% Castro::construct_new_gravity_source() 10 0.02263 0.02627 0.03127 0.86% Castro::post_init() 1 0.02514 0.02532 0.02559 0.71% VisMF::Write(FabArray) 2 0.01275 0.01378 0.01648 0.46% Castro::post_timestep() 10 0.01592 0.01613 0.01627 0.45% Castro::apply_source_to_state() 20 0.01269 0.01477 0.01557 0.43% FabArray::Saxpy() 20 0.01264 0.01472 0.01552 0.43% FabArray::setDomainBndry() 41 0.008573 0.01165 0.01287 0.36% Castro::check_for_nan() 20 0.01128 0.01202 0.01284 0.35% MultiFab::contains_nan() 20 0.01126 0.012 0.01282 0.35% Castro::Castro() 1 0.01127 0.01167 0.01255 0.35% Castro::construct_old_source() 50 0.007675 0.01056 0.01131 0.31% Castro::construct_old_gravity_source() 10 0.00763 0.0105 0.01124 0.31% Castro::initMFs() 1 0.007044 0.007516 0.0088 0.24% Castro::computeNewDt() 9 0.008704 0.008707 0.008714 0.24% AmrLevel::AmrLevel(dm) 1 0.006033 0.00629 0.006821 0.19% StateData::define() 4 0.006014 0.006262 0.006794 0.19% Castro::enforce_min_density() 62 0.00563 0.006044 0.006468 0.18% Castro::swap_state_time_levels() 10 0.003427 0.004518 0.004892 0.14% Castro::finalize_advance() 10 0.002879 0.003713 0.004532 0.13% Castro::finalize_do_advance() 10 0.0005947 0.001758 0.002214 0.06% Castro::buildMetrics() 1 0.001787 0.001878 0.002081 0.06% Castro::post_regrid() 1 0.001452 0.001577 0.001649 0.05% Amr::InitAmr() 1 0.0003012 0.0003371 0.0004593 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.109e-05 0.0001333 0.0001691 0.00% DistributionMapping::LeastUsedCPUs() 1 6.627e-06 0.0001267 0.0001612 0.00% Castro::enforce_consistent_e() 1 8.29e-05 9.234e-05 0.0001181 0.00% FabArrayBase::getCPC() 41 6.58e-05 8.122e-05 9.72e-05 0.00% Amr::writeSmallPlotFile() 1 2.781e-05 4.604e-05 6.17e-05 0.00% Castro::enforce_speed_limit() 62 2.364e-05 2.599e-05 2.795e-05 0.00% FabArrayBase::CPC::define() 2 2.07e-05 2.268e-05 2.571e-05 0.00% Amr::initSubcycle() 1 8.926e-06 1.072e-05 1.934e-05 0.00% Gravity::swapTimeLevels() 10 8.119e-06 1.341e-05 1.573e-05 0.00% Castro::retry_advance_ctu() 10 4.556e-06 6.455e-06 1.492e-05 0.00% Gravity::set_mass_offset() 10 9.932e-06 1.166e-05 1.36e-05 0.00% Castro::create_source_corrector() 10 6.125e-06 9.273e-06 1.295e-05 0.00% Castro::FluxRegCrseInit 10 6.721e-06 8.059e-06 9.555e-06 0.00% Castro::FluxRegFineAdd() 10 1.734e-06 2.146e-06 2.695e-06 0.00% DistributionMapping::Distribute() 1 8.03e-07 1.136e-06 1.69e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-33-g9adadfb8d881) finalized