MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-37-ga6e89ecc1175) initialized Starting run at 05:23:00 UTC on 2023-04-27. Successfully read inputs file ... Castro git describe: 23.04-17-gf9272dfba AMReX git describe: 23.04-37-ga6e89ecc1 Microphysics git describe: 23.04-6-gfc4258c6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016034911 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.357132476 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.363032869 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.326914454 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.326666551 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.360432251 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.341215861 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31134819 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310833096 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311302758 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310533464 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010272079 seconds Ending run at 05:23:04 UTC on 2023-04-27. Run time = 3.553174464 Run time without initialization = 3.336987261 Average number of zones advanced per microsecond: 0.786 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.553 ... 3.553 ... 3.553 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2886 2.3437 2.3744 66.82% Gravity::make_radial_gravity() 21 0.3195 0.3245 0.3367 9.48% Castro::estTimeStep() 21 0.03852 0.092 0.1494 4.21% Castro::initData() 1 0.0384 0.08604 0.1418 3.99% Castro::do_advance_ctu() 10 0.04701 0.08082 0.1394 3.92% FabArray::ParallelCopy_finish() 41 0.03716 0.05331 0.0862 2.43% FabArray::setVal() 143 0.06122 0.07085 0.08541 2.40% amrex::Copy() 193 0.06142 0.07259 0.07963 2.24% Castro::reset_internal_energy(Fab) 1008 0.04834 0.05018 0.05314 1.50% Castro::normalize_species() 62 0.04081 0.04166 0.04292 1.21% FabArray::ParallelCopy_nowait() 41 0.03681 0.04106 0.0428 1.20% StateData::FillBoundary(geom) 41 0.03247 0.03579 0.03862 1.09% FillPatchIterator::Initialize 41 0.02974 0.03353 0.03587 1.01% Castro::construct_new_gravity_source() 10 0.02216 0.02538 0.0303 0.85% Gravity::interpolate_monopole_grav() 21 0.0278 0.02795 0.02815 0.79% Castro::initialize_do_advance() 10 0.01277 0.01793 0.02187 0.62% Castro::computeTemp() 63 0.01838 0.01976 0.02076 0.58% VisMF::Write(FabArray) 2 0.01395 0.01454 0.01708 0.48% FabArray::Saxpy() 20 0.01278 0.01415 0.0148 0.42% Castro::initialize_advance() 10 0.004178 0.01059 0.01474 0.41% FabArray::setDomainBndry() 41 0.008651 0.01124 0.01272 0.36% MultiFab::contains_nan() 20 0.01124 0.0118 0.01267 0.36% Castro::construct_old_gravity_source() 10 0.00761 0.01022 0.01079 0.30% Castro::initMFs() 1 0.007093 0.00827 0.01045 0.29% Amr::writePlotFile() 2 0.006654 0.009213 0.01005 0.28% StateData::define() 4 0.005866 0.006869 0.008561 0.24% Castro::enforce_min_density() 62 0.00558 0.005958 0.006632 0.19% Castro::construct_new_source() 50 0.005834 0.006254 0.006607 0.19% main() 1 0.005805 0.006331 0.006574 0.19% Gravity::get_new_grav_vector() 11 0.003214 0.003867 0.005917 0.17% Castro::swap_state_time_levels() 10 0.003382 0.004582 0.004847 0.14% Amr::coarseTimeStep() 10 0.001289 0.002454 0.00339 0.10% Gravity::get_old_grav_vector() 10 0.001891 0.002366 0.002647 0.07% Castro::buildMetrics() 1 0.001666 0.001961 0.002465 0.07% Castro::finalize_do_advance() 10 0.0006364 0.001461 0.001646 0.05% Castro::expand_state() 10 0.0008305 0.001268 0.001427 0.04% Amr::InitAmr() 1 0.0002867 0.0003782 0.0005212 0.01% Amr::timeStep() 10 0.0001837 0.0002455 0.0004087 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002732 0.0003052 0.000349 0.01% DistributionMapping::LeastUsedCPUs() 1 6.683e-06 0.0001791 0.0002795 0.01% Castro::clean_state() 62 0.0001341 0.0001545 0.0001845 0.01% Castro::enforce_consistent_e() 1 7.592e-05 9.361e-05 0.0001487 0.00% StateDataPhysBCFunct::() 41 8.509e-05 0.0001055 0.0001351 0.00% Castro::finalize_advance() 10 9.109e-05 0.0001103 0.0001256 0.00% Amr::FinalizeInit() 1 3.978e-06 1.768e-05 0.0001024 0.00% FillPatchSingleLevel 41 6.353e-05 7.292e-05 0.0001003 0.00% FabArray::ParallelCopy() 41 6.401e-05 7.249e-05 8.882e-05 0.00% FabArrayBase::getCPC() 41 3.705e-05 6.12e-05 8.288e-05 0.00% Castro::Castro() 1 5.662e-05 7.046e-05 8.09e-05 0.00% Castro::do_old_sources() 10 5.075e-05 6.345e-05 8.085e-05 0.00% Castro::construct_old_source() 50 4.845e-05 6.457e-05 7.966e-05 0.00% Castro::do_new_sources() 10 5.328e-05 6.451e-05 7.603e-05 0.00% Amr::writeSmallPlotFile() 1 2.515e-05 5.424e-05 6.577e-05 0.00% Castro::apply_source_to_state() 20 3.264e-05 4.571e-05 6.006e-05 0.00% Castro::subcycle_advance_ctu() 10 4.031e-05 4.482e-05 4.963e-05 0.00% Castro::construct_new_gravity() 10 3.457e-05 4.023e-05 4.785e-05 0.00% Castro::construct_old_gravity() 10 3.915e-05 4.122e-05 4.414e-05 0.00% Castro::advance() 10 3.455e-05 4.017e-05 4.412e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.461e-05 3.111e-05 4.243e-05 0.00% Castro::enforce_speed_limit() 62 2.41e-05 2.93e-05 3.533e-05 0.00% Amr::defBaseLevel() 1 1.894e-05 2.503e-05 3.312e-05 0.00% FabArrayBase::CPC::define() 2 2.305e-05 2.621e-05 2.939e-05 0.00% Castro::check_for_nan() 20 2.056e-05 2.259e-05 2.47e-05 0.00% Castro::computeNewDt() 9 1.185e-05 1.328e-05 2.03e-05 0.00% Gravity::swapTimeLevels() 10 1.013e-05 1.241e-05 1.72e-05 0.00% Castro::post_timestep() 10 1.335e-05 1.576e-05 1.704e-05 0.00% Amr::initSubcycle() 1 9.068e-06 1.227e-05 1.671e-05 0.00% Gravity::set_mass_offset() 10 9.006e-06 1.139e-05 1.357e-05 0.00% Castro::FluxRegCrseInit 10 7.159e-06 9.908e-06 1.329e-05 0.00% Castro::retry_advance_ctu() 10 4.214e-06 5.77e-06 1.024e-05 0.00% Castro::create_source_corrector() 10 7.533e-06 8.342e-06 9.406e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.982e-06 5.786e-06 9.132e-06 0.00% Amr::InitializeInit() 1 2.012e-06 3.263e-06 5.414e-06 0.00% Castro::computeInitialDt() 2 3.515e-06 4.169e-06 5.295e-06 0.00% Castro::post_init() 1 2.883e-06 3.797e-06 4.692e-06 0.00% Castro::post_regrid() 1 1.794e-06 2.575e-06 3.661e-06 0.00% Castro::FluxRegFineAdd() 10 1.825e-06 2.306e-06 2.883e-06 0.00% Amr::init() 1 1.812e-06 2.384e-06 2.817e-06 0.00% Amr::initialInit() 1 1.492e-06 1.872e-06 2.25e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 1.21e-06 1.657e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.552 3.553 3.553 100.00% Amr::coarseTimeStep() 10 3.32 3.32 3.32 93.44% Amr::timeStep() 10 3.307 3.308 3.309 93.14% Castro::advance() 10 3.291 3.292 3.293 92.68% Castro::subcycle_advance_ctu() 10 3.203 3.215 3.228 90.83% Castro::do_advance_ctu() 10 3.203 3.215 3.227 90.83% Castro::construct_ctu_hydro_source() 10 2.289 2.344 2.374 66.82% Gravity::make_radial_gravity() 21 0.3361 0.3413 0.3497 9.84% Gravity::get_new_grav_vector() 11 0.2207 0.2247 0.2267 6.38% Amr::init() 1 0.2154 0.2156 0.2157 6.07% Castro::construct_old_gravity() 10 0.1924 0.1984 0.2039 5.74% Gravity::get_old_grav_vector() 10 0.1917 0.1977 0.2033 5.72% Amr::initialInit() 1 0.1993 0.1995 0.1998 5.62% Castro::construct_new_gravity() 10 0.1945 0.1979 0.1991 5.60% FillPatchIterator::Initialize 41 0.1505 0.1753 0.1964 5.53% Castro::initialize_do_advance() 10 0.1524 0.1711 0.1817 5.11% Amr::InitializeInit() 1 0.05899 0.1092 0.1689 4.75% Amr::defBaseLevel() 1 0.05899 0.1092 0.1689 4.75% FillPatchSingleLevel 41 0.1104 0.1305 0.158 4.45% Castro::estTimeStep() 21 0.03852 0.092 0.1494 4.21% Castro::initData() 1 0.04216 0.08997 0.1456 4.10% Amr::FinalizeInit() 1 0.0304 0.09037 0.1406 3.96% Castro::expand_state() 10 0.1016 0.1233 0.1348 3.79% FabArray::ParallelCopy() 41 0.07773 0.09453 0.1232 3.47% Castro::clean_state() 62 0.113 0.117 0.1214 3.42% Castro::computeInitialDt() 2 0.002118 0.06207 0.1124 3.16% FabArray::ParallelCopy_finish() 41 0.03716 0.05331 0.0862 2.43% FabArray::setVal() 143 0.06122 0.07085 0.08541 2.40% Castro::initialize_advance() 10 0.05997 0.07299 0.08498 2.39% amrex::Copy() 193 0.06142 0.07259 0.07963 2.24% Castro::do_new_sources() 10 0.05977 0.06679 0.07805 2.20% Castro::computeTemp() 63 0.06701 0.07024 0.07423 2.09% Castro::reset_internal_energy(MultiFab) 63 0.04863 0.05048 0.05347 1.50% Castro::reset_internal_energy(Fab) 1008 0.04834 0.05018 0.05314 1.50% Castro::do_old_sources() 10 0.0403 0.04508 0.04633 1.30% Castro::normalize_species() 62 0.04081 0.04166 0.04292 1.21% FabArray::ParallelCopy_nowait() 41 0.03691 0.04115 0.04288 1.21% StateDataPhysBCFunct::() 41 0.0326 0.0359 0.03872 1.09% StateData::FillBoundary(geom) 41 0.03247 0.03579 0.03862 1.09% Castro::construct_new_source() 50 0.02824 0.03163 0.03691 1.04% Castro::construct_new_gravity_source() 10 0.02216 0.02538 0.0303 0.85% Gravity::interpolate_monopole_grav() 21 0.0278 0.02795 0.02815 0.79% Castro::post_init() 1 0.02756 0.02785 0.02807 0.79% Amr::writePlotFile() 2 0.02628 0.02643 0.02654 0.75% VisMF::Write(FabArray) 2 0.01395 0.01454 0.01708 0.48% Castro::post_timestep() 10 0.01536 0.01586 0.01619 0.46% Castro::apply_source_to_state() 20 0.01283 0.0142 0.01484 0.42% FabArray::Saxpy() 20 0.01278 0.01415 0.0148 0.42% Castro::Castro() 1 0.01061 0.01209 0.01475 0.42% FabArray::setDomainBndry() 41 0.008651 0.01124 0.01272 0.36% Castro::check_for_nan() 20 0.01126 0.01183 0.01269 0.36% MultiFab::contains_nan() 20 0.01124 0.0118 0.01267 0.36% Castro::construct_old_source() 50 0.007658 0.01028 0.01087 0.31% Castro::construct_old_gravity_source() 10 0.00761 0.01022 0.01079 0.30% Castro::initMFs() 1 0.007093 0.00827 0.01045 0.29% AmrLevel::AmrLevel(dm) 1 0.005897 0.0069 0.008603 0.24% StateData::define() 4 0.005866 0.006869 0.008561 0.24% Castro::computeNewDt() 9 0.008427 0.008444 0.008464 0.24% Castro::enforce_min_density() 62 0.00558 0.005958 0.006632 0.19% Castro::swap_state_time_levels() 10 0.003382 0.004582 0.004847 0.14% Castro::finalize_advance() 10 0.00309 0.003714 0.004765 0.13% Castro::buildMetrics() 1 0.001802 0.00213 0.002699 0.08% Castro::post_regrid() 1 0.00154 0.001598 0.001828 0.05% Castro::finalize_do_advance() 10 0.0006364 0.001461 0.001646 0.05% Amr::InitAmr() 1 0.000296 0.0003904 0.0005379 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.232e-05 0.0001861 0.0002875 0.01% DistributionMapping::LeastUsedCPUs() 1 6.683e-06 0.0001791 0.0002795 0.01% Castro::enforce_consistent_e() 1 7.592e-05 9.361e-05 0.0001487 0.00% FabArrayBase::getCPC() 41 6.188e-05 8.74e-05 0.0001123 0.00% Amr::writeSmallPlotFile() 1 2.515e-05 5.424e-05 6.577e-05 0.00% Castro::enforce_speed_limit() 62 2.41e-05 2.93e-05 3.533e-05 0.00% FabArrayBase::CPC::define() 2 2.305e-05 2.621e-05 2.939e-05 0.00% Gravity::swapTimeLevels() 10 1.013e-05 1.241e-05 1.72e-05 0.00% Amr::initSubcycle() 1 9.068e-06 1.227e-05 1.671e-05 0.00% Gravity::set_mass_offset() 10 9.006e-06 1.139e-05 1.357e-05 0.00% Castro::FluxRegCrseInit 10 7.159e-06 9.908e-06 1.329e-05 0.00% Castro::retry_advance_ctu() 10 4.214e-06 5.77e-06 1.024e-05 0.00% Castro::create_source_corrector() 10 7.533e-06 8.342e-06 9.406e-06 0.00% Castro::FluxRegFineAdd() 10 1.825e-06 2.306e-06 2.883e-06 0.00% DistributionMapping::Distribute() 1 8.95e-07 1.21e-06 1.657e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-37-ga6e89ecc1175) finalized