MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.04-40-gee492f47704a) initialized Starting run at 05:21:01 UTC on 2023-04-28. Successfully read inputs file ... Castro git describe: 23.04-17-gf9272dfba AMReX git describe: 23.04-40-gee492f477 Microphysics git describe: 23.04-6-gfc4258c6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016638132 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360222971 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.341478631 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.328681033 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.327774327 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.328423084 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.421840621 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.320513518 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.310162159 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311670384 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310476112 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009903427 seconds Ending run at 05:21:05 UTC on 2023-04-28. Run time = 3.574057749 Run time without initialization = 3.377491559 Average number of zones advanced per microsecond: 0.776 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.574 ... 3.574 ... 3.574 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2748 2.3491 2.3997 67.14% Gravity::make_radial_gravity() 21 0.319 0.341 0.3583 10.02% Castro::do_advance_ctu() 10 0.04963 0.1 0.1765 4.94% Castro::initData() 1 0.03887 0.08131 0.1243 3.48% Castro::estTimeStep() 21 0.03044 0.07106 0.1087 3.04% amrex::Copy() 193 0.06515 0.07402 0.08857 2.48% FabArray::setVal() 143 0.06982 0.07391 0.08096 2.27% FabArray::ParallelCopy_finish() 41 0.04227 0.05329 0.07787 2.18% Castro::reset_internal_energy(Fab) 1008 0.04822 0.05014 0.05182 1.45% Castro::normalize_species() 62 0.04052 0.04182 0.04377 1.22% FabArray::ParallelCopy_nowait() 41 0.03466 0.04063 0.04226 1.18% StateData::FillBoundary(geom) 41 0.03385 0.03593 0.03818 1.07% FillPatchIterator::Initialize 41 0.02772 0.03331 0.0361 1.01% Gravity::interpolate_monopole_grav() 21 0.02774 0.02787 0.02814 0.79% Castro::construct_new_gravity_source() 10 0.02149 0.02409 0.02577 0.72% Castro::computeTemp() 63 0.01951 0.02059 0.02271 0.64% Castro::initialize_do_advance() 10 0.01191 0.01709 0.01892 0.53% FabArray::Saxpy() 20 0.01187 0.01445 0.0167 0.47% VisMF::Write(FabArray) 2 0.01314 0.01395 0.01666 0.47% MultiFab::contains_nan() 20 0.01087 0.01306 0.01662 0.46% Castro::initialize_advance() 10 0.011 0.01359 0.01623 0.45% FabArray::setDomainBndry() 41 0.008742 0.01126 0.01272 0.36% Castro::construct_old_gravity_source() 10 0.007067 0.01038 0.01221 0.34% Amr::writePlotFile() 2 0.007626 0.01029 0.01162 0.33% Castro::initMFs() 1 0.007151 0.007891 0.008326 0.23% StateData::define() 4 0.005967 0.00649 0.006842 0.19% Castro::construct_new_source() 50 0.005799 0.006341 0.006698 0.19% Castro::enforce_min_density() 62 0.005467 0.006149 0.006477 0.18% main() 1 0.005086 0.005369 0.005598 0.16% Castro::swap_state_time_levels() 10 0.003396 0.004538 0.005433 0.15% Gravity::get_old_grav_vector() 10 0.001827 0.002465 0.00426 0.12% Gravity::get_new_grav_vector() 11 0.00294 0.003681 0.004054 0.11% Amr::coarseTimeStep() 10 0.00144 0.001989 0.003009 0.08% Castro::buildMetrics() 1 0.001715 0.001852 0.002009 0.06% Castro::finalize_do_advance() 10 0.0005454 0.001598 0.001995 0.06% Castro::expand_state() 10 0.0006306 0.0007913 0.0009345 0.03% Amr::InitAmr() 1 0.0002972 0.0003372 0.0005226 0.01% Amr::timeStep() 10 0.0001666 0.0002677 0.0004792 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002915 0.0003232 0.0003556 0.01% DistributionMapping::LeastUsedCPUs() 1 7.93e-06 0.0001972 0.0002366 0.01% Castro::clean_state() 62 0.0001468 0.0001615 0.0001911 0.01% StateDataPhysBCFunct::() 41 8.09e-05 0.0001179 0.0001823 0.01% Castro::finalize_advance() 10 0.0001049 0.0001133 0.0001292 0.00% Castro::enforce_consistent_e() 1 7.947e-05 8.943e-05 0.0001019 0.00% Amr::FinalizeInit() 1 3.889e-06 1.619e-05 9.77e-05 0.00% FillPatchSingleLevel 41 6.674e-05 7.425e-05 8.374e-05 0.00% Castro::construct_old_source() 50 4.835e-05 6.792e-05 8.147e-05 0.00% FabArray::ParallelCopy() 41 6.655e-05 7.315e-05 7.929e-05 0.00% Castro::Castro() 1 6.056e-05 7.012e-05 7.888e-05 0.00% Castro::do_old_sources() 10 5.32e-05 6.328e-05 7.861e-05 0.00% Castro::do_new_sources() 10 5.521e-05 6.704e-05 7.622e-05 0.00% FabArrayBase::getCPC() 41 4.282e-05 6.11e-05 7.302e-05 0.00% Amr::writeSmallPlotFile() 1 3.094e-05 5.62e-05 6.373e-05 0.00% Castro::subcycle_advance_ctu() 10 3.89e-05 4.85e-05 5.904e-05 0.00% Castro::advance() 10 4.127e-05 4.684e-05 5.865e-05 0.00% Castro::apply_source_to_state() 20 4.253e-05 4.796e-05 5.175e-05 0.00% Castro::construct_new_gravity() 10 3.506e-05 4.137e-05 5.051e-05 0.00% Castro::construct_old_gravity() 10 3.32e-05 3.971e-05 4.721e-05 0.00% AmrLevel::AmrLevel(dm) 1 3.049e-05 3.306e-05 3.802e-05 0.00% Castro::create_source_corrector() 10 8.106e-06 1.544e-05 3.613e-05 0.00% Castro::enforce_speed_limit() 62 2.328e-05 2.586e-05 3.213e-05 0.00% Amr::defBaseLevel() 1 1.703e-05 2.176e-05 2.798e-05 0.00% FabArrayBase::CPC::define() 2 2.168e-05 2.423e-05 2.767e-05 0.00% Castro::check_for_nan() 20 1.967e-05 2.299e-05 2.571e-05 0.00% Gravity::swapTimeLevels() 10 1.283e-05 1.489e-05 1.991e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.638e-05 1.814e-05 0.00% Gravity::set_mass_offset() 10 1.06e-05 1.165e-05 1.287e-05 0.00% Castro::computeNewDt() 9 1.085e-05 1.16e-05 1.247e-05 0.00% Castro::FluxRegCrseInit 10 6.876e-06 9.355e-06 1.073e-05 0.00% Amr::initSubcycle() 1 9.742e-06 1.02e-05 1.066e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.138e-06 5.04e-06 6.925e-06 0.00% Castro::retry_advance_ctu() 10 4.483e-06 5.316e-06 6.648e-06 0.00% Amr::InitializeInit() 1 2.218e-06 2.681e-06 5.263e-06 0.00% Castro::computeInitialDt() 2 3.57e-06 3.981e-06 4.389e-06 0.00% Castro::post_init() 1 2.841e-06 3.625e-06 4.262e-06 0.00% Castro::post_regrid() 1 2.116e-06 2.966e-06 4.146e-06 0.00% Amr::init() 1 2.074e-06 2.545e-06 4.016e-06 0.00% Castro::FluxRegFineAdd() 10 1.905e-06 2.477e-06 3.263e-06 0.00% Amr::initialInit() 1 1.284e-06 1.76e-06 2.53e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.009e-06 1.107e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.574 3.574 3.574 100.00% Amr::coarseTimeStep() 10 3.362 3.362 3.362 94.07% Amr::timeStep() 10 3.349 3.35 3.351 93.75% Castro::advance() 10 3.334 3.334 3.334 93.29% Castro::subcycle_advance_ctu() 10 3.25 3.252 3.255 91.08% Castro::do_advance_ctu() 10 3.25 3.252 3.255 91.08% Castro::construct_ctu_hydro_source() 10 2.275 2.349 2.4 67.14% Gravity::make_radial_gravity() 21 0.3356 0.3577 0.3735 10.45% Castro::construct_old_gravity() 10 0.2021 0.2203 0.235 6.58% Gravity::get_old_grav_vector() 10 0.201 0.2195 0.2344 6.56% Gravity::get_new_grav_vector() 11 0.2197 0.2213 0.2219 6.21% Amr::init() 1 0.1959 0.1961 0.1961 5.49% Castro::construct_new_gravity() 10 0.1929 0.1934 0.1941 5.43% FillPatchIterator::Initialize 41 0.1576 0.1748 0.1846 5.17% Amr::initialInit() 1 0.1786 0.1792 0.1796 5.03% Castro::initialize_do_advance() 10 0.1519 0.1635 0.175 4.90% FillPatchSingleLevel 41 0.1182 0.1302 0.1478 4.14% Amr::InitializeInit() 1 0.06198 0.1041 0.1477 4.13% Amr::defBaseLevel() 1 0.06197 0.1041 0.1477 4.13% Castro::initData() 1 0.04293 0.08533 0.1281 3.58% Castro::clean_state() 62 0.1153 0.1182 0.1241 3.47% Castro::expand_state() 10 0.107 0.1147 0.122 3.41% Amr::FinalizeInit() 1 0.03171 0.07507 0.1171 3.28% FabArray::ParallelCopy() 41 0.08335 0.09408 0.1127 3.15% Castro::estTimeStep() 21 0.03044 0.07106 0.1087 3.04% amrex::Copy() 193 0.06515 0.07402 0.08857 2.48% Castro::computeInitialDt() 2 0.002149 0.04574 0.0879 2.46% FabArray::setVal() 143 0.06982 0.07391 0.08096 2.27% Castro::initialize_advance() 10 0.07558 0.07853 0.0804 2.25% FabArray::ParallelCopy_finish() 41 0.04227 0.05329 0.07787 2.18% Castro::computeTemp() 63 0.06954 0.07106 0.07487 2.09% Castro::do_new_sources() 10 0.06066 0.06415 0.0706 1.98% Castro::do_old_sources() 10 0.03923 0.04743 0.05676 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04855 0.05047 0.05216 1.46% Castro::reset_internal_energy(Fab) 1008 0.04822 0.05014 0.05182 1.45% Castro::normalize_species() 62 0.04052 0.04182 0.04377 1.22% FabArray::ParallelCopy_nowait() 41 0.03475 0.04072 0.04235 1.18% StateDataPhysBCFunct::() 41 0.03396 0.03605 0.03828 1.07% StateData::FillBoundary(geom) 41 0.03385 0.03593 0.03818 1.07% Castro::construct_new_source() 50 0.02729 0.03044 0.03246 0.91% Castro::post_init() 1 0.02845 0.02884 0.02925 0.82% Gravity::interpolate_monopole_grav() 21 0.02774 0.02787 0.02814 0.79% Amr::writePlotFile() 2 0.02646 0.02691 0.02744 0.77% Castro::construct_new_gravity_source() 10 0.02149 0.02409 0.02577 0.72% Castro::apply_source_to_state() 20 0.01192 0.0145 0.01675 0.47% FabArray::Saxpy() 20 0.01187 0.01445 0.0167 0.47% VisMF::Write(FabArray) 2 0.01314 0.01395 0.01666 0.47% Castro::check_for_nan() 20 0.0109 0.01309 0.01664 0.47% MultiFab::contains_nan() 20 0.01087 0.01306 0.01662 0.46% Castro::post_timestep() 10 0.01543 0.01594 0.01642 0.46% Castro::Castro() 1 0.01032 0.01201 0.01283 0.36% FabArray::setDomainBndry() 41 0.008742 0.01126 0.01272 0.36% Castro::construct_old_source() 50 0.007115 0.01045 0.01227 0.34% Castro::construct_old_gravity_source() 10 0.007067 0.01038 0.01221 0.34% Castro::computeNewDt() 9 0.008472 0.008481 0.00849 0.24% Castro::initMFs() 1 0.007151 0.007891 0.008326 0.23% AmrLevel::AmrLevel(dm) 1 0.005998 0.006523 0.006874 0.19% StateData::define() 4 0.005967 0.00649 0.006842 0.19% Castro::enforce_min_density() 62 0.005467 0.006149 0.006477 0.18% Castro::swap_state_time_levels() 10 0.003396 0.004538 0.005433 0.15% Castro::finalize_advance() 10 0.00315 0.003327 0.003671 0.10% Castro::buildMetrics() 1 0.001851 0.002009 0.002174 0.06% Castro::finalize_do_advance() 10 0.0005454 0.001598 0.001995 0.06% Castro::post_regrid() 1 0.001515 0.001673 0.001968 0.06% Amr::InitAmr() 1 0.0003071 0.0003474 0.0005331 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.334e-05 0.0002032 0.0002446 0.01% DistributionMapping::LeastUsedCPUs() 1 7.93e-06 0.0001972 0.0002366 0.01% Castro::enforce_consistent_e() 1 7.947e-05 8.943e-05 0.0001019 0.00% FabArrayBase::getCPC() 41 6.843e-05 8.533e-05 0.0001007 0.00% Amr::writeSmallPlotFile() 1 3.094e-05 5.62e-05 6.373e-05 0.00% Castro::create_source_corrector() 10 8.106e-06 1.544e-05 3.613e-05 0.00% Castro::enforce_speed_limit() 62 2.328e-05 2.586e-05 3.213e-05 0.00% FabArrayBase::CPC::define() 2 2.168e-05 2.423e-05 2.767e-05 0.00% Gravity::swapTimeLevels() 10 1.283e-05 1.489e-05 1.991e-05 0.00% Gravity::set_mass_offset() 10 1.06e-05 1.165e-05 1.287e-05 0.00% Castro::FluxRegCrseInit 10 6.876e-06 9.355e-06 1.073e-05 0.00% Amr::initSubcycle() 1 9.742e-06 1.02e-05 1.066e-05 0.00% Castro::retry_advance_ctu() 10 4.483e-06 5.316e-06 6.648e-06 0.00% Castro::FluxRegFineAdd() 10 1.905e-06 2.477e-06 3.263e-06 0.00% DistributionMapping::Distribute() 1 9.44e-07 1.009e-06 1.107e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.04-40-gee492f47704a) finalized