MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-1-g85a247b8a9d6) initialized Starting run at 05:22:01 UTC on 2023-05-02. Successfully read inputs file ... Castro git describe: 23.05-1-gc94456cbd AMReX git describe: 23.05-1-g85a247b8a Microphysics git describe: 23.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017758953 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360487201 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.392766701 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.366881401 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335503534 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.37140964 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.335132255 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.311405759 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312239454 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.311499109 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310101205 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010278893 seconds Ending run at 05:22:04 UTC on 2023-05-02. Run time = 3.615416834 Run time without initialization = 3.425134299 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.615 ... 3.615 ... 3.616 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3279 2.3771 2.4595 68.03% Gravity::make_radial_gravity() 21 0.3266 0.3414 0.3579 9.90% Castro::do_advance_ctu() 10 0.03585 0.1189 0.1691 4.68% Castro::initData() 1 0.03845 0.07989 0.1168 3.23% Castro::estTimeStep() 21 0.02291 0.06837 0.1163 3.22% FabArray::setVal() 143 0.06373 0.0706 0.08244 2.28% amrex::Copy() 193 0.06227 0.07378 0.08174 2.26% FabArray::ParallelCopy_finish() 41 0.03702 0.05088 0.07025 1.94% Castro::reset_internal_energy(Fab) 1008 0.04799 0.04972 0.05215 1.44% FabArray::ParallelCopy_nowait() 41 0.0361 0.04178 0.04387 1.21% Castro::normalize_species() 62 0.04038 0.04137 0.04248 1.18% StateData::FillBoundary(geom) 41 0.03392 0.03663 0.04151 1.15% FillPatchIterator::Initialize 41 0.02989 0.03501 0.03733 1.03% Gravity::interpolate_monopole_grav() 21 0.02773 0.02823 0.02921 0.81% Castro::construct_new_gravity_source() 10 0.02279 0.0247 0.02746 0.76% Castro::initialize_do_advance() 10 0.01269 0.01784 0.02123 0.59% Castro::computeTemp() 63 0.01946 0.02008 0.0208 0.58% VisMF::Write(FabArray) 2 0.01347 0.01415 0.01734 0.48% Castro::initialize_advance() 10 0.009694 0.01244 0.01559 0.43% FabArray::Saxpy() 20 0.0124 0.01387 0.01492 0.41% MultiFab::contains_nan() 20 0.01094 0.01192 0.01323 0.37% FabArray::setDomainBndry() 41 0.008734 0.01187 0.01308 0.36% Amr::writePlotFile() 2 0.00895 0.01209 0.01294 0.36% Castro::construct_old_gravity_source() 10 0.007831 0.01016 0.01086 0.30% Castro::initMFs() 1 0.006977 0.007565 0.008362 0.23% StateData::define() 4 0.005816 0.006225 0.006665 0.18% main() 1 0.005682 0.006126 0.006608 0.18% Castro::construct_new_source() 50 0.005567 0.006116 0.006293 0.17% Castro::enforce_min_density() 62 0.005764 0.006003 0.006214 0.17% Castro::swap_state_time_levels() 10 0.00294 0.004563 0.004831 0.13% Gravity::get_new_grav_vector() 11 0.003163 0.003878 0.00464 0.13% Amr::coarseTimeStep() 10 0.001488 0.00256 0.003326 0.09% Gravity::get_old_grav_vector() 10 0.001825 0.002421 0.002823 0.08% Castro::buildMetrics() 1 0.001624 0.001752 0.001906 0.05% Castro::finalize_do_advance() 10 0.0006215 0.001549 0.00188 0.05% Castro::expand_state() 10 0.0008482 0.0009668 0.001084 0.03% Amr::InitAmr() 1 0.0002689 0.0003136 0.0004835 0.01% Amr::timeStep() 10 0.0001839 0.0002393 0.0003972 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002821 0.0003087 0.0003664 0.01% DistributionMapping::LeastUsedCPUs() 1 7.226e-06 0.0001822 0.0002176 0.01% Castro::clean_state() 62 0.0001426 0.0001562 0.0001699 0.00% StateDataPhysBCFunct::() 41 9.319e-05 0.0001041 0.0001415 0.00% Castro::finalize_advance() 10 9.242e-05 0.0001077 0.0001199 0.00% Castro::enforce_consistent_e() 1 7.652e-05 8.838e-05 0.0001048 0.00% FabArray::ParallelCopy() 41 7.201e-05 7.5e-05 8.721e-05 0.00% Amr::FinalizeInit() 1 3.735e-06 1.474e-05 8.615e-05 0.00% FillPatchSingleLevel 41 6.899e-05 7.454e-05 8.178e-05 0.00% Castro::do_old_sources() 10 5.772e-05 6.594e-05 7.727e-05 0.00% Castro::construct_old_source() 50 5.493e-05 6.658e-05 7.68e-05 0.00% Castro::Castro() 1 5.714e-05 6.47e-05 7.666e-05 0.00% FabArrayBase::getCPC() 41 4.522e-05 5.934e-05 7.328e-05 0.00% Castro::do_new_sources() 10 4.979e-05 6.219e-05 7.162e-05 0.00% Amr::writeSmallPlotFile() 1 2.611e-05 4.653e-05 6.173e-05 0.00% Castro::subcycle_advance_ctu() 10 3.852e-05 4.734e-05 5.817e-05 0.00% Castro::apply_source_to_state() 20 4.317e-05 4.872e-05 5.457e-05 0.00% Castro::construct_new_gravity() 10 3.591e-05 4.122e-05 4.711e-05 0.00% Castro::advance() 10 3.509e-05 4.058e-05 4.598e-05 0.00% Castro::construct_old_gravity() 10 3.505e-05 4.089e-05 4.467e-05 0.00% Amr::defBaseLevel() 1 1.735e-05 2.69e-05 4.027e-05 0.00% Castro::check_for_nan() 20 1.944e-05 2.412e-05 3.413e-05 0.00% Castro::enforce_speed_limit() 62 2.371e-05 2.667e-05 3.404e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.737e-05 2.389e-05 3.265e-05 0.00% FabArrayBase::CPC::define() 2 2.058e-05 2.468e-05 2.87e-05 0.00% Gravity::swapTimeLevels() 10 1.083e-05 1.358e-05 1.801e-05 0.00% Castro::post_timestep() 10 1.406e-05 1.573e-05 1.773e-05 0.00% Gravity::set_mass_offset() 10 9.425e-06 1.213e-05 1.621e-05 0.00% Castro::computeNewDt() 9 9.833e-06 1.167e-05 1.387e-05 0.00% Castro::FluxRegCrseInit 10 7.644e-06 8.933e-06 1.082e-05 0.00% Amr::initSubcycle() 1 9.118e-06 9.787e-06 1.061e-05 0.00% Castro::create_source_corrector() 10 7.499e-06 8.596e-06 9.928e-06 0.00% Castro::retry_advance_ctu() 10 4.526e-06 5.284e-06 6.594e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.805e-06 4.535e-06 6.413e-06 0.00% Amr::InitializeInit() 1 2.101e-06 2.715e-06 5.923e-06 0.00% Castro::post_init() 1 2.524e-06 3.469e-06 4.79e-06 0.00% Castro::computeInitialDt() 2 3.214e-06 4.119e-06 4.646e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.628e-06 3.798e-06 0.00% Castro::post_regrid() 1 1.913e-06 2.781e-06 3.493e-06 0.00% Amr::init() 1 1.658e-06 2.205e-06 2.633e-06 0.00% Amr::initialInit() 1 1.107e-06 1.598e-06 1.893e-06 0.00% DistributionMapping::Distribute() 1 8.92e-07 1e-06 1.195e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.615 3.615 3.615 100.00% Amr::coarseTimeStep() 10 3.408 3.408 3.408 94.27% Amr::timeStep() 10 3.395 3.396 3.397 93.96% Castro::advance() 10 3.379 3.38 3.38 93.50% Castro::subcycle_advance_ctu() 10 3.294 3.301 3.306 91.44% Castro::do_advance_ctu() 10 3.293 3.301 3.306 91.44% Castro::construct_ctu_hydro_source() 10 2.328 2.377 2.46 68.03% Gravity::make_radial_gravity() 21 0.343 0.3587 0.372 10.29% Gravity::get_new_grav_vector() 11 0.2274 0.23 0.2319 6.42% Castro::construct_old_gravity() 10 0.2016 0.213 0.2242 6.20% Gravity::get_old_grav_vector() 10 0.2009 0.2123 0.2236 6.18% Castro::construct_new_gravity() 10 0.2007 0.2023 0.2039 5.64% Amr::init() 1 0.1897 0.1898 0.1899 5.25% FillPatchIterator::Initialize 41 0.1635 0.1765 0.1881 5.20% Castro::initialize_do_advance() 10 0.1558 0.1672 0.1766 4.88% Amr::initialInit() 1 0.1711 0.1713 0.1717 4.75% FillPatchSingleLevel 41 0.1144 0.1296 0.1406 3.89% Amr::InitializeInit() 1 0.05924 0.1018 0.1399 3.87% Amr::defBaseLevel() 1 0.05924 0.1018 0.1399 3.87% Castro::expand_state() 10 0.11 0.1193 0.1289 3.56% Castro::clean_state() 62 0.1137 0.1167 0.1209 3.34% Castro::initData() 1 0.04237 0.0839 0.1205 3.33% Castro::estTimeStep() 21 0.02291 0.06837 0.1163 3.22% Amr::FinalizeInit() 1 0.03156 0.06948 0.1119 3.09% FabArray::ParallelCopy() 41 0.07982 0.09282 0.1065 2.95% Castro::initialize_advance() 10 0.07046 0.07554 0.08311 2.30% Castro::computeInitialDt() 2 0.00221 0.04023 0.08287 2.29% FabArray::setVal() 143 0.06373 0.0706 0.08244 2.28% amrex::Copy() 193 0.06227 0.07378 0.08174 2.26% Castro::do_new_sources() 10 0.05947 0.06451 0.07369 2.04% Castro::computeTemp() 63 0.06775 0.07011 0.07327 2.03% FabArray::ParallelCopy_finish() 41 0.03702 0.05088 0.07025 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04829 0.05003 0.05247 1.45% Castro::reset_internal_energy(Fab) 1008 0.04799 0.04972 0.05215 1.44% Castro::do_old_sources() 10 0.04267 0.04499 0.0483 1.34% FabArray::ParallelCopy_nowait() 41 0.03619 0.04186 0.04395 1.22% Castro::normalize_species() 62 0.04038 0.04137 0.04248 1.18% StateDataPhysBCFunct::() 41 0.03402 0.03673 0.04165 1.15% StateData::FillBoundary(geom) 41 0.03392 0.03663 0.04151 1.15% Castro::construct_new_source() 50 0.02886 0.03081 0.03372 0.93% Gravity::interpolate_monopole_grav() 21 0.02773 0.02823 0.02921 0.81% Amr::writePlotFile() 2 0.02831 0.02887 0.02913 0.81% Castro::post_init() 1 0.02851 0.02878 0.0291 0.80% Castro::construct_new_gravity_source() 10 0.02279 0.0247 0.02746 0.76% VisMF::Write(FabArray) 2 0.01347 0.01415 0.01734 0.48% Castro::post_timestep() 10 0.01547 0.01587 0.01641 0.45% Castro::apply_source_to_state() 20 0.01245 0.01392 0.01497 0.41% FabArray::Saxpy() 20 0.0124 0.01387 0.01492 0.41% Castro::check_for_nan() 20 0.01096 0.01194 0.01325 0.37% MultiFab::contains_nan() 20 0.01094 0.01192 0.01323 0.37% FabArray::setDomainBndry() 41 0.008734 0.01187 0.01308 0.36% Castro::Castro() 1 0.01075 0.01148 0.01245 0.34% Castro::construct_old_source() 50 0.007886 0.01023 0.01093 0.30% Castro::construct_old_gravity_source() 10 0.007831 0.01016 0.01086 0.30% Castro::computeNewDt() 9 0.00846 0.008465 0.008472 0.23% Castro::initMFs() 1 0.006977 0.007565 0.008362 0.23% AmrLevel::AmrLevel(dm) 1 0.005839 0.006249 0.006697 0.19% StateData::define() 4 0.005816 0.006225 0.006665 0.18% Castro::enforce_min_density() 62 0.005764 0.006003 0.006214 0.17% Castro::swap_state_time_levels() 10 0.00294 0.004563 0.004831 0.13% Castro::finalize_advance() 10 0.002953 0.00347 0.004168 0.12% Castro::buildMetrics() 1 0.001761 0.001904 0.002078 0.06% Castro::finalize_do_advance() 10 0.0006215 0.001549 0.00188 0.05% Castro::post_regrid() 1 0.001633 0.001699 0.00187 0.05% Amr::InitAmr() 1 0.000278 0.0003234 0.0004938 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.232e-05 0.0001877 0.000225 0.01% DistributionMapping::LeastUsedCPUs() 1 7.226e-06 0.0001822 0.0002176 0.01% Castro::enforce_consistent_e() 1 7.652e-05 8.838e-05 0.0001048 0.00% FabArrayBase::getCPC() 41 6.828e-05 8.402e-05 9.386e-05 0.00% Amr::writeSmallPlotFile() 1 2.611e-05 4.653e-05 6.173e-05 0.00% Castro::enforce_speed_limit() 62 2.371e-05 2.667e-05 3.404e-05 0.00% FabArrayBase::CPC::define() 2 2.058e-05 2.468e-05 2.87e-05 0.00% Gravity::swapTimeLevels() 10 1.083e-05 1.358e-05 1.801e-05 0.00% Gravity::set_mass_offset() 10 9.425e-06 1.213e-05 1.621e-05 0.00% Castro::FluxRegCrseInit 10 7.644e-06 8.933e-06 1.082e-05 0.00% Amr::initSubcycle() 1 9.118e-06 9.787e-06 1.061e-05 0.00% Castro::create_source_corrector() 10 7.499e-06 8.596e-06 9.928e-06 0.00% Castro::retry_advance_ctu() 10 4.526e-06 5.284e-06 6.594e-06 0.00% Castro::FluxRegFineAdd() 10 1.927e-06 2.628e-06 3.798e-06 0.00% DistributionMapping::Distribute() 1 8.92e-07 1e-06 1.195e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-1-g85a247b8a9d6) finalized