MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-2-g0916f6856021) initialized Starting run at 05:21:30 UTC on 2023-05-04. Successfully read inputs file ... Castro git describe: 23.05-1-gc94456cbd AMReX git describe: 23.05-2-g0916f6856 Microphysics git describe: 23.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016394701 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369060065 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352967071 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.341552808 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.341969084 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.368461317 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.345319392 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.321259451 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.322812586 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.323241561 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.323288077 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010294497 seconds Ending run at 05:21:33 UTC on 2023-05-04. Run time = 3.636371702 Run time without initialization = 3.427501941 Average number of zones advanced per microsecond: 0.765 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.636 ... 3.636 ... 3.636 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2574 2.3748 2.4760 68.09% Gravity::make_radial_gravity() 21 0.3171 0.3307 0.3485 9.58% Castro::do_advance_ctu() 10 0.0166 0.1201 0.243 6.68% Castro::initData() 1 0.04119 0.08298 0.1348 3.71% Castro::estTimeStep() 21 0.02343 0.0861 0.1243 3.42% FabArray::setVal() 143 0.06605 0.07456 0.08549 2.35% amrex::Copy() 193 0.07119 0.07621 0.0847 2.33% FabArray::ParallelCopy_finish() 41 0.03478 0.04843 0.05689 1.56% Castro::reset_internal_energy(Fab) 1008 0.04958 0.05072 0.05159 1.42% FabArray::ParallelCopy_nowait() 41 0.0391 0.04256 0.04407 1.21% Castro::normalize_species() 62 0.04117 0.04205 0.04287 1.18% StateData::FillBoundary(geom) 41 0.03209 0.03673 0.04182 1.15% FillPatchIterator::Initialize 41 0.02887 0.03543 0.03824 1.05% Gravity::interpolate_monopole_grav() 21 0.028 0.02851 0.02893 0.80% Castro::construct_new_gravity_source() 10 0.02331 0.02575 0.02887 0.79% Castro::initialize_do_advance() 10 0.01449 0.01894 0.02249 0.62% Castro::computeTemp() 63 0.02001 0.02061 0.02198 0.60% VisMF::Write(FabArray) 2 0.0134 0.01407 0.0169 0.46% FabArray::Saxpy() 20 0.01374 0.01497 0.0159 0.44% Castro::initialize_advance() 10 0.009588 0.01247 0.0157 0.43% FabArray::setDomainBndry() 41 0.008551 0.01183 0.01308 0.36% MultiFab::contains_nan() 20 0.01135 0.01196 0.01284 0.35% Castro::construct_old_gravity_source() 10 0.008696 0.0106 0.01103 0.30% Castro::initMFs() 1 0.007044 0.008115 0.0108 0.30% Amr::writePlotFile() 2 0.007064 0.009718 0.01063 0.29% StateData::define() 4 0.005926 0.006696 0.008518 0.23% Castro::construct_new_source() 50 0.006257 0.006426 0.00666 0.18% Gravity::get_new_grav_vector() 11 0.003058 0.004345 0.00663 0.18% main() 1 0.00579 0.006185 0.006506 0.18% Castro::enforce_min_density() 62 0.006082 0.006197 0.006328 0.17% Castro::swap_state_time_levels() 10 0.003598 0.004924 0.005166 0.14% Amr::coarseTimeStep() 10 0.00146 0.002126 0.003461 0.10% Gravity::get_old_grav_vector() 10 0.001761 0.002589 0.002939 0.08% Castro::finalize_do_advance() 10 0.001655 0.002396 0.002879 0.08% Castro::buildMetrics() 1 0.001668 0.001893 0.002404 0.07% Castro::expand_state() 10 0.0006187 0.001049 0.001213 0.03% Amr::InitAmr() 1 0.000285 0.000401 0.0005363 0.01% Amr::timeStep() 10 0.0001619 0.0002219 0.0003947 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002955 0.0003064 0.0003225 0.01% DistributionMapping::LeastUsedCPUs() 1 7.381e-06 0.0001621 0.0002832 0.01% Castro::enforce_consistent_e() 1 8.095e-05 9.983e-05 0.0001657 0.00% Castro::clean_state() 62 0.0001449 0.0001524 0.0001613 0.00% StateDataPhysBCFunct::() 41 9.378e-05 0.0001036 0.0001282 0.00% Castro::finalize_advance() 10 9.604e-05 0.0001064 0.000113 0.00% Castro::Castro() 1 5.147e-05 6.767e-05 8.551e-05 0.00% Castro::do_old_sources() 10 5.086e-05 6.574e-05 8.452e-05 0.00% Amr::FinalizeInit() 1 3.862e-06 1.428e-05 7.9e-05 0.00% Castro::construct_old_source() 50 5.174e-05 6.762e-05 7.9e-05 0.00% FillPatchSingleLevel 41 6.478e-05 6.983e-05 7.673e-05 0.00% Castro::do_new_sources() 10 5.932e-05 6.773e-05 7.523e-05 0.00% FabArray::ParallelCopy() 41 6.635e-05 6.954e-05 7.359e-05 0.00% Amr::writeSmallPlotFile() 1 2.562e-05 5.232e-05 6.493e-05 0.00% FabArrayBase::getCPC() 41 5.134e-05 5.843e-05 6.454e-05 0.00% Castro::apply_source_to_state() 20 4.301e-05 4.722e-05 5.678e-05 0.00% Castro::subcycle_advance_ctu() 10 3.636e-05 4.414e-05 5.407e-05 0.00% Castro::advance() 10 3.546e-05 3.924e-05 4.566e-05 0.00% Castro::construct_old_gravity() 10 3.647e-05 4.027e-05 4.35e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.756e-05 2.75e-05 4.116e-05 0.00% Castro::construct_new_gravity() 10 3.444e-05 3.768e-05 4.094e-05 0.00% Castro::enforce_speed_limit() 62 2.388e-05 2.605e-05 3.271e-05 0.00% Amr::defBaseLevel() 1 1.77e-05 2.322e-05 3.12e-05 0.00% FabArrayBase::CPC::define() 2 2.107e-05 2.371e-05 2.857e-05 0.00% Castro::check_for_nan() 20 1.949e-05 2.129e-05 2.268e-05 0.00% Castro::post_timestep() 10 1.384e-05 1.613e-05 1.88e-05 0.00% Amr::initSubcycle() 1 8.963e-06 1.129e-05 1.638e-05 0.00% Gravity::swapTimeLevels() 10 1.208e-05 1.323e-05 1.59e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.144e-06 5.876e-06 1.3e-05 0.00% Castro::computeNewDt() 9 1.061e-05 1.175e-05 1.292e-05 0.00% Gravity::set_mass_offset() 10 9.398e-06 1.053e-05 1.256e-05 0.00% Castro::FluxRegCrseInit 10 6.82e-06 8.525e-06 1.027e-05 0.00% Castro::create_source_corrector() 10 7.013e-06 8.106e-06 9.229e-06 0.00% Amr::InitializeInit() 1 2.061e-06 2.892e-06 6.03e-06 0.00% Castro::retry_advance_ctu() 10 3.095e-06 5.304e-06 5.845e-06 0.00% Castro::post_regrid() 1 1.99e-06 3.263e-06 5.024e-06 0.00% Castro::computeInitialDt() 2 3.59e-06 4.259e-06 4.952e-06 0.00% Castro::post_init() 1 3.271e-06 3.881e-06 4.52e-06 0.00% Amr::init() 1 1.9e-06 2.426e-06 3.136e-06 0.00% Castro::FluxRegFineAdd() 10 1.835e-06 2.234e-06 2.549e-06 0.00% Amr::initialInit() 1 1.181e-06 1.77e-06 2.295e-06 0.00% DistributionMapping::Distribute() 1 8.32e-07 1.101e-06 1.759e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.636 3.636 3.636 100.00% Amr::coarseTimeStep() 10 3.411 3.411 3.411 93.80% Amr::timeStep() 10 3.398 3.399 3.4 93.49% Castro::advance() 10 3.381 3.383 3.383 93.04% Castro::subcycle_advance_ctu() 10 3.296 3.302 3.308 90.96% Castro::do_advance_ctu() 10 3.296 3.302 3.308 90.96% Castro::construct_ctu_hydro_source() 10 2.257 2.375 2.476 68.09% Gravity::make_radial_gravity() 21 0.3333 0.3482 0.3651 10.04% Gravity::get_new_grav_vector() 11 0.2266 0.2288 0.2306 6.34% Castro::construct_old_gravity() 10 0.195 0.2049 0.2191 6.03% Gravity::get_old_grav_vector() 10 0.1942 0.2041 0.2183 6.00% Amr::init() 1 0.2081 0.2083 0.2084 5.73% Castro::construct_new_gravity() 10 0.2017 0.2031 0.2039 5.61% Amr::initialInit() 1 0.1915 0.1919 0.1922 5.29% FillPatchIterator::Initialize 41 0.1576 0.1753 0.1873 5.15% Castro::initialize_do_advance() 10 0.1519 0.1708 0.1815 4.99% Amr::InitializeInit() 1 0.06351 0.1061 0.1621 4.46% Amr::defBaseLevel() 1 0.0635 0.1061 0.1621 4.46% Castro::initData() 1 0.04488 0.08703 0.1385 3.81% FillPatchSingleLevel 41 0.1179 0.128 0.137 3.77% Castro::expand_state() 10 0.1061 0.1214 0.1327 3.65% Amr::FinalizeInit() 1 0.02965 0.08581 0.1281 3.52% Castro::estTimeStep() 21 0.02343 0.0861 0.1243 3.42% Castro::clean_state() 62 0.1173 0.119 0.1211 3.33% Castro::computeInitialDt() 2 0.002061 0.05824 0.1007 2.77% FabArray::ParallelCopy() 41 0.079 0.09114 0.09992 2.75% FabArray::setVal() 143 0.06605 0.07456 0.08549 2.35% amrex::Copy() 193 0.07119 0.07621 0.0847 2.33% Castro::initialize_advance() 10 0.0714 0.07679 0.0832 2.29% Castro::do_new_sources() 10 0.06182 0.06913 0.07738 2.13% Castro::computeTemp() 63 0.07024 0.07164 0.07388 2.03% FabArray::ParallelCopy_finish() 41 0.03478 0.04843 0.05689 1.56% Castro::reset_internal_energy(MultiFab) 63 0.0499 0.05103 0.05189 1.43% Castro::reset_internal_energy(Fab) 1008 0.04958 0.05072 0.05159 1.42% Castro::do_old_sources() 10 0.04438 0.04691 0.04777 1.31% FabArray::ParallelCopy_nowait() 41 0.03918 0.04264 0.04415 1.21% Castro::normalize_species() 62 0.04117 0.04205 0.04287 1.18% StateDataPhysBCFunct::() 41 0.03219 0.03684 0.04191 1.15% StateData::FillBoundary(geom) 41 0.03209 0.03673 0.04182 1.15% Castro::construct_new_source() 50 0.02969 0.03218 0.03532 0.97% Gravity::interpolate_monopole_grav() 21 0.028 0.02851 0.02893 0.80% Castro::construct_new_gravity_source() 10 0.02331 0.02575 0.02887 0.79% Castro::post_init() 1 0.02668 0.02696 0.0272 0.75% Amr::writePlotFile() 2 0.02658 0.02677 0.027 0.74% VisMF::Write(FabArray) 2 0.0134 0.01407 0.0169 0.46% Castro::post_timestep() 10 0.01611 0.01626 0.01638 0.45% Castro::apply_source_to_state() 20 0.01378 0.01501 0.01595 0.44% FabArray::Saxpy() 20 0.01374 0.01497 0.0159 0.44% Castro::Castro() 1 0.01103 0.01214 0.01502 0.41% FabArray::setDomainBndry() 41 0.008551 0.01183 0.01308 0.36% Castro::check_for_nan() 20 0.01137 0.01199 0.01286 0.35% MultiFab::contains_nan() 20 0.01135 0.01196 0.01284 0.35% Castro::construct_old_source() 50 0.008748 0.01066 0.0111 0.31% Castro::construct_old_gravity_source() 10 0.008696 0.0106 0.01103 0.30% Castro::initMFs() 1 0.007044 0.008115 0.0108 0.30% Castro::computeNewDt() 9 0.008557 0.008564 0.00857 0.24% AmrLevel::AmrLevel(dm) 1 0.005953 0.006724 0.008556 0.24% StateData::define() 4 0.005926 0.006696 0.008518 0.23% Castro::enforce_min_density() 62 0.006082 0.006197 0.006328 0.17% Castro::swap_state_time_levels() 10 0.003598 0.004924 0.005166 0.14% Castro::finalize_advance() 10 0.002927 0.003425 0.003948 0.11% Castro::finalize_do_advance() 10 0.001655 0.002396 0.002879 0.08% Castro::buildMetrics() 1 0.001805 0.002057 0.002635 0.07% Castro::post_regrid() 1 0.001574 0.001673 0.001762 0.05% Amr::InitAmr() 1 0.0002947 0.0004123 0.0005526 0.02% DistributionMapping::SFCProcessorMapDoIt() 1 1.336e-05 0.0001691 0.0002909 0.01% DistributionMapping::LeastUsedCPUs() 1 7.381e-06 0.0001621 0.0002832 0.01% Castro::enforce_consistent_e() 1 8.095e-05 9.983e-05 0.0001657 0.00% FabArrayBase::getCPC() 41 7.586e-05 8.214e-05 8.819e-05 0.00% Amr::writeSmallPlotFile() 1 2.562e-05 5.232e-05 6.493e-05 0.00% Castro::enforce_speed_limit() 62 2.388e-05 2.605e-05 3.271e-05 0.00% FabArrayBase::CPC::define() 2 2.107e-05 2.371e-05 2.857e-05 0.00% Amr::initSubcycle() 1 8.963e-06 1.129e-05 1.638e-05 0.00% Gravity::swapTimeLevels() 10 1.208e-05 1.323e-05 1.59e-05 0.00% Gravity::set_mass_offset() 10 9.398e-06 1.053e-05 1.256e-05 0.00% Castro::FluxRegCrseInit 10 6.82e-06 8.525e-06 1.027e-05 0.00% Castro::create_source_corrector() 10 7.013e-06 8.106e-06 9.229e-06 0.00% Castro::retry_advance_ctu() 10 3.095e-06 5.304e-06 5.845e-06 0.00% Castro::FluxRegFineAdd() 10 1.835e-06 2.234e-06 2.549e-06 0.00% DistributionMapping::Distribute() 1 8.32e-07 1.101e-06 1.759e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-2-g0916f6856021) finalized