MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-5-g68aa69a11750) initialized Starting run at 05:21:29 UTC on 2023-05-08. Successfully read inputs file ... Castro git describe: 23.05-3-gf4650ffb0 AMReX git describe: 23.05-5-g68aa69a11 Microphysics git describe: 23.05-3-g3a9cad19 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016004809 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.37650718 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.350726565 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.338561827 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.339098475 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.361015774 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.349323401 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.310505624 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.312135372 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.313394102 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.311321884 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010319636 seconds Ending run at 05:21:33 UTC on 2023-05-08. Run time = 3.561803236 Run time without initialization = 3.380583002 Average number of zones advanced per microsecond: 0.775 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.561 ... 3.562 ... 3.562 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3113 2.3591 2.3891 67.07% Gravity::make_radial_gravity() 21 0.3147 0.3262 0.332 9.32% Castro::do_advance_ctu() 10 0.0372 0.07055 0.119 3.34% Castro::estTimeStep() 21 0.02084 0.06882 0.1184 3.32% Castro::initData() 1 0.04066 0.07784 0.1141 3.20% FabArray::setVal() 143 0.06523 0.0785 0.0928 2.61% amrex::Copy() 193 0.07228 0.07778 0.08636 2.42% FabArray::ParallelCopy_finish() 41 0.03553 0.05612 0.06863 1.93% Castro::reset_internal_energy(Fab) 1008 0.04848 0.0496 0.05148 1.45% FabArray::ParallelCopy_nowait() 41 0.04084 0.04335 0.04498 1.26% Castro::normalize_species() 62 0.04114 0.04221 0.04305 1.21% StateData::FillBoundary(geom) 41 0.03277 0.03676 0.04093 1.15% FillPatchIterator::Initialize 41 0.03009 0.03637 0.04 1.12% Castro::construct_new_gravity_source() 10 0.02323 0.02754 0.03205 0.90% Gravity::interpolate_monopole_grav() 21 0.02795 0.02885 0.03103 0.87% Castro::initialize_do_advance() 10 0.01632 0.01973 0.02324 0.65% Castro::computeTemp() 63 0.01966 0.02001 0.02032 0.57% FabArray::Saxpy() 20 0.0149 0.01589 0.01677 0.47% VisMF::Write(FabArray) 2 0.01328 0.01389 0.01655 0.46% Castro::initialize_advance() 10 0.009713 0.01279 0.01597 0.45% FabArray::setDomainBndry() 41 0.01001 0.01239 0.01387 0.39% MultiFab::contains_nan() 20 0.01184 0.01255 0.01349 0.38% Castro::construct_old_gravity_source() 10 0.01071 0.01121 0.01172 0.33% Amr::writePlotFile() 2 0.007013 0.009808 0.01071 0.30% Castro::initMFs() 1 0.007247 0.007584 0.009256 0.26% main() 1 0.005698 0.006631 0.006912 0.19% StateData::define() 4 0.005838 0.006076 0.006731 0.19% Castro::construct_new_source() 50 0.00613 0.006383 0.006616 0.19% Castro::enforce_min_density() 62 0.005808 0.006111 0.006356 0.18% Castro::swap_state_time_levels() 10 0.003569 0.004785 0.004967 0.14% Gravity::get_new_grav_vector() 11 0.003368 0.003895 0.004219 0.12% Amr::coarseTimeStep() 10 0.001784 0.002407 0.003126 0.09% Gravity::get_old_grav_vector() 10 0.001851 0.002551 0.002856 0.08% Castro::finalize_do_advance() 10 0.001754 0.002207 0.002612 0.07% Castro::buildMetrics() 1 0.001632 0.001709 0.001944 0.05% Castro::expand_state() 10 0.0008759 0.001047 0.001266 0.04% Amr::timeStep() 10 0.0001762 0.0002347 0.0004767 0.01% Amr::InitAmr() 1 0.0002854 0.0003168 0.0004439 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002828 0.0002977 0.0003177 0.01% Castro::clean_state() 62 0.0001363 0.0001464 0.0001564 0.00% DistributionMapping::LeastUsedCPUs() 1 6.879e-06 0.0001236 0.0001516 0.00% Castro::finalize_advance() 10 8.191e-05 9.822e-05 0.0001273 0.00% StateDataPhysBCFunct::() 41 7.747e-05 8.935e-05 0.0001007 0.00% Castro::enforce_consistent_e() 1 8.447e-05 9.176e-05 9.866e-05 0.00% Amr::FinalizeInit() 1 4.538e-06 1.654e-05 9.13e-05 0.00% FillPatchSingleLevel 41 5.952e-05 7.094e-05 8.919e-05 0.00% Castro::Castro() 1 5.423e-05 6.683e-05 8.613e-05 0.00% Castro::construct_old_source() 50 5.935e-05 6.863e-05 8.553e-05 0.00% FabArray::ParallelCopy() 41 6.146e-05 6.877e-05 7.859e-05 0.00% Castro::do_old_sources() 10 5.245e-05 6.489e-05 7.533e-05 0.00% Castro::do_new_sources() 10 5.687e-05 6.373e-05 7.086e-05 0.00% FabArrayBase::getCPC() 41 4.432e-05 5.222e-05 6.333e-05 0.00% Amr::writeSmallPlotFile() 1 3.193e-05 4.162e-05 5.897e-05 0.00% Castro::apply_source_to_state() 20 3.924e-05 4.633e-05 5.871e-05 0.00% Castro::subcycle_advance_ctu() 10 4.011e-05 4.576e-05 5.702e-05 0.00% Castro::construct_old_gravity() 10 3.544e-05 4.318e-05 5.436e-05 0.00% Castro::construct_new_gravity() 10 3.527e-05 4.037e-05 5.219e-05 0.00% Castro::advance() 10 3.433e-05 3.979e-05 4.422e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.39e-05 2.203e-05 3.595e-05 0.00% Amr::defBaseLevel() 1 1.777e-05 2.386e-05 3.12e-05 0.00% Castro::enforce_speed_limit() 62 2.1e-05 2.562e-05 3.044e-05 0.00% FabArrayBase::CPC::define() 2 2.086e-05 2.424e-05 2.861e-05 0.00% Castro::check_for_nan() 20 2.018e-05 2.247e-05 2.391e-05 0.00% Castro::post_timestep() 10 1.339e-05 1.514e-05 1.704e-05 0.00% Gravity::swapTimeLevels() 10 1.149e-05 1.298e-05 1.593e-05 0.00% Castro::computeNewDt() 9 8.74e-06 1.073e-05 1.392e-05 0.00% Gravity::set_mass_offset() 10 8.794e-06 1.048e-05 1.323e-05 0.00% Castro::post_init() 1 2.654e-06 5.939e-06 1.052e-05 0.00% Amr::initSubcycle() 1 9.031e-06 9.612e-06 1.039e-05 0.00% Castro::FluxRegCrseInit 10 6.458e-06 8.236e-06 9.853e-06 0.00% Castro::create_source_corrector() 10 7.206e-06 8.75e-06 9.852e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.709e-06 5.488e-06 8.288e-06 0.00% Amr::init() 1 2.081e-06 3.032e-06 7.734e-06 0.00% Castro::retry_advance_ctu() 10 4.627e-06 5.554e-06 6.213e-06 0.00% Amr::InitializeInit() 1 2.171e-06 2.907e-06 5.403e-06 0.00% Castro::computeInitialDt() 2 3.54e-06 4.278e-06 4.929e-06 0.00% Castro::post_regrid() 1 1.789e-06 3.213e-06 4.489e-06 0.00% Amr::initialInit() 1 1.441e-06 1.931e-06 3.015e-06 0.00% Castro::FluxRegFineAdd() 10 2.062e-06 2.397e-06 2.818e-06 0.00% DistributionMapping::Distribute() 1 8.18e-07 9.189e-07 1.137e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.561 3.562 3.562 100.00% Amr::coarseTimeStep() 10 3.363 3.363 3.363 94.43% Amr::timeStep() 10 3.351 3.351 3.352 94.11% Castro::advance() 10 3.334 3.335 3.336 93.66% Castro::subcycle_advance_ctu() 10 3.24 3.251 3.262 91.59% Castro::do_advance_ctu() 10 3.24 3.251 3.262 91.59% Castro::construct_ctu_hydro_source() 10 2.311 2.359 2.389 67.07% Gravity::make_radial_gravity() 21 0.3314 0.3441 0.3499 9.82% Gravity::get_new_grav_vector() 11 0.2282 0.2298 0.2311 6.49% Castro::construct_old_gravity() 10 0.1936 0.2042 0.2096 5.88% Gravity::get_old_grav_vector() 10 0.1924 0.2032 0.2083 5.85% Castro::construct_new_gravity() 10 0.2039 0.2049 0.2057 5.77% FillPatchIterator::Initialize 41 0.1686 0.1853 0.2029 5.70% Castro::initialize_do_advance() 10 0.1628 0.1779 0.1908 5.36% Amr::init() 1 0.1806 0.1808 0.1808 5.08% Amr::initialInit() 1 0.1642 0.1645 0.1646 4.62% FillPatchSingleLevel 41 0.1191 0.1365 0.1513 4.25% Castro::expand_state() 10 0.1115 0.1277 0.1422 3.99% Amr::InitializeInit() 1 0.06244 0.1 0.136 3.82% Amr::defBaseLevel() 1 0.06243 0.1 0.136 3.82% Castro::clean_state() 62 0.1153 0.1174 0.1202 3.38% Castro::estTimeStep() 21 0.02084 0.06882 0.1184 3.32% Castro::initData() 1 0.04483 0.08193 0.1183 3.32% FabArray::ParallelCopy() 41 0.08065 0.09962 0.1132 3.18% Amr::FinalizeInit() 1 0.0284 0.06441 0.102 2.86% FabArray::setVal() 143 0.06523 0.0785 0.0928 2.61% Castro::initialize_advance() 10 0.06948 0.08037 0.09061 2.54% amrex::Copy() 193 0.07228 0.07778 0.08636 2.42% Castro::do_new_sources() 10 0.06023 0.0718 0.08352 2.34% Castro::computeInitialDt() 2 0.002029 0.03796 0.07544 2.12% Castro::computeTemp() 63 0.06891 0.06991 0.07211 2.02% FabArray::ParallelCopy_finish() 41 0.03553 0.05612 0.06863 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04876 0.04989 0.05179 1.45% Castro::reset_internal_energy(Fab) 1008 0.04848 0.0496 0.05148 1.45% Castro::do_old_sources() 10 0.04664 0.047 0.04757 1.34% FabArray::ParallelCopy_nowait() 41 0.04091 0.04343 0.04505 1.26% Castro::normalize_species() 62 0.04114 0.04221 0.04305 1.21% StateDataPhysBCFunct::() 41 0.03284 0.03685 0.04101 1.15% StateData::FillBoundary(geom) 41 0.03277 0.03676 0.04093 1.15% Castro::construct_new_source() 50 0.02936 0.03393 0.03853 1.08% Castro::construct_new_gravity_source() 10 0.02323 0.02754 0.03205 0.90% Gravity::interpolate_monopole_grav() 21 0.02795 0.02885 0.03103 0.87% Amr::writePlotFile() 2 0.02657 0.0267 0.02696 0.76% Castro::post_init() 1 0.02567 0.02591 0.02608 0.73% Castro::apply_source_to_state() 20 0.01496 0.01593 0.01681 0.47% FabArray::Saxpy() 20 0.0149 0.01589 0.01677 0.47% VisMF::Write(FabArray) 2 0.01328 0.01389 0.01655 0.46% Castro::post_timestep() 10 0.01555 0.01598 0.01638 0.46% FabArray::setDomainBndry() 41 0.01001 0.01239 0.01387 0.39% Castro::check_for_nan() 20 0.01186 0.01257 0.01351 0.38% MultiFab::contains_nan() 20 0.01184 0.01255 0.01349 0.38% Castro::Castro() 1 0.01163 0.01186 0.01279 0.36% Castro::construct_old_source() 50 0.01077 0.01127 0.01179 0.33% Castro::construct_old_gravity_source() 10 0.01071 0.01121 0.01172 0.33% Castro::initMFs() 1 0.007247 0.007584 0.009256 0.26% Castro::computeNewDt() 9 0.008484 0.008494 0.008503 0.24% AmrLevel::AmrLevel(dm) 1 0.005853 0.006098 0.006753 0.19% StateData::define() 4 0.005838 0.006076 0.006731 0.19% Castro::enforce_min_density() 62 0.005808 0.006111 0.006356 0.18% Castro::swap_state_time_levels() 10 0.003569 0.004785 0.004967 0.14% Castro::finalize_advance() 10 0.002905 0.003767 0.004634 0.13% Castro::finalize_do_advance() 10 0.001754 0.002207 0.002612 0.07% Castro::buildMetrics() 1 0.001778 0.001859 0.002122 0.06% Castro::post_regrid() 1 0.001519 0.001603 0.001657 0.05% Amr::InitAmr() 1 0.000295 0.0003264 0.000453 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.143e-05 0.00013 0.0001603 0.00% DistributionMapping::LeastUsedCPUs() 1 6.879e-06 0.0001236 0.0001516 0.00% Castro::enforce_consistent_e() 1 8.447e-05 9.176e-05 9.866e-05 0.00% FabArrayBase::getCPC() 41 6.889e-05 7.646e-05 8.518e-05 0.00% Amr::writeSmallPlotFile() 1 3.193e-05 4.162e-05 5.897e-05 0.00% Castro::enforce_speed_limit() 62 2.1e-05 2.562e-05 3.044e-05 0.00% FabArrayBase::CPC::define() 2 2.086e-05 2.424e-05 2.861e-05 0.00% Gravity::swapTimeLevels() 10 1.149e-05 1.298e-05 1.593e-05 0.00% Gravity::set_mass_offset() 10 8.794e-06 1.048e-05 1.323e-05 0.00% Amr::initSubcycle() 1 9.031e-06 9.612e-06 1.039e-05 0.00% Castro::FluxRegCrseInit 10 6.458e-06 8.236e-06 9.853e-06 0.00% Castro::create_source_corrector() 10 7.206e-06 8.75e-06 9.852e-06 0.00% Castro::retry_advance_ctu() 10 4.627e-06 5.554e-06 6.213e-06 0.00% Castro::FluxRegFineAdd() 10 2.062e-06 2.397e-06 2.818e-06 0.00% DistributionMapping::Distribute() 1 8.18e-07 9.189e-07 1.137e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-5-g68aa69a11750) finalized