MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-9-g85a89e265369) initialized Starting run at 05:22:09 UTC on 2023-05-09. Successfully read inputs file ... Castro git describe: 23.05-4-g91b60034d AMReX git describe: 23.05-9-g85a89e265 Microphysics git describe: 23.05-3-g3a9cad19 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015729785 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.365470686 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.367557999 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.365106669 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.365944215 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.402019087 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.382163813 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.377538085 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.380549778 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.377506361 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.380991922 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.015367643 seconds Ending run at 05:22:13 UTC on 2023-05-09. Run time = 3.969036347 Run time without initialization = 3.789129335 Average number of zones advanced per microsecond: 0.692 Average number of zones advanced per microsecond per rank: 0.086 TinyProfiler total time across processes [min...avg...max]: 3.968 ... 3.969 ... 3.969 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.4235 2.5925 2.8056 70.69% Castro::do_advance_ctu() 10 0.007688 0.2263 0.3931 9.90% Gravity::make_radial_gravity() 21 0.3183 0.3381 0.3631 9.15% Castro::initData() 1 0.03845 0.07721 0.1125 2.83% Castro::estTimeStep() 21 0.02568 0.06689 0.1076 2.71% FabArray::ParallelCopy_finish() 41 0.03963 0.05121 0.09794 2.47% FabArray::setVal() 143 0.07492 0.08386 0.09378 2.36% amrex::Copy() 193 0.05963 0.07884 0.09017 2.27% Castro::reset_internal_energy(Fab) 1008 0.0491 0.05075 0.05356 1.35% FabArray::ParallelCopy_nowait() 41 0.03801 0.04414 0.04643 1.17% Castro::normalize_species() 62 0.04086 0.04194 0.04382 1.10% FillPatchIterator::Initialize 41 0.02639 0.03621 0.04111 1.04% StateData::FillBoundary(geom) 41 0.03341 0.03652 0.0397 1.00% Gravity::interpolate_monopole_grav() 21 0.02811 0.02853 0.02932 0.74% Castro::construct_new_gravity_source() 10 0.02505 0.0267 0.02906 0.73% Castro::computeTemp() 63 0.01958 0.02028 0.02255 0.57% Castro::initialize_do_advance() 10 0.01016 0.01903 0.02113 0.53% VisMF::Write(FabArray) 2 0.0131 0.01457 0.01841 0.46% FabArray::Saxpy() 20 0.01458 0.01661 0.01756 0.44% Amr::writePlotFile() 2 0.008812 0.01302 0.01633 0.41% Castro::initialize_advance() 10 0.008641 0.01357 0.01529 0.39% MultiFab::contains_nan() 20 0.01172 0.01322 0.01517 0.38% FabArray::setDomainBndry() 41 0.008273 0.01207 0.01446 0.36% Castro::construct_old_gravity_source() 10 0.007939 0.01192 0.01282 0.32% Castro::initMFs() 1 0.007117 0.007432 0.009353 0.24% main() 1 0.006775 0.00792 0.008311 0.21% Castro::construct_new_source() 50 0.006167 0.006964 0.00724 0.18% Castro::enforce_min_density() 62 0.005607 0.006187 0.006759 0.17% StateData::define() 4 0.005917 0.006045 0.006757 0.17% Castro::swap_state_time_levels() 10 0.003407 0.004474 0.004827 0.12% Gravity::get_new_grav_vector() 11 0.002606 0.003857 0.004696 0.12% Gravity::get_old_grav_vector() 10 0.001441 0.002431 0.003161 0.08% Amr::coarseTimeStep() 10 0.001712 0.002306 0.002921 0.07% Castro::finalize_do_advance() 10 0.0005799 0.001919 0.002477 0.06% Castro::buildMetrics() 1 0.001659 0.001705 0.001936 0.05% Castro::expand_state() 10 0.0006583 0.0009265 0.00114 0.03% Amr::InitAmr() 1 0.0002861 0.0003165 0.0004201 0.01% Amr::timeStep() 10 0.0001879 0.0002561 0.0003802 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003023 0.0003159 0.0003361 0.01% Castro::clean_state() 62 0.0001494 0.0001649 0.0001836 0.00% Castro::finalize_advance() 10 9.732e-05 0.0001272 0.0001576 0.00% Castro::Castro() 1 6.102e-05 8.674e-05 0.0001426 0.00% StateDataPhysBCFunct::() 41 8.469e-05 0.0001031 0.0001327 0.00% DistributionMapping::LeastUsedCPUs() 1 7.349e-06 0.0001029 0.0001204 0.00% Castro::enforce_consistent_e() 1 7.563e-05 8.685e-05 0.0001078 0.00% FabArray::ParallelCopy() 41 7.222e-05 8.165e-05 9.719e-05 0.00% FillPatchSingleLevel 41 7.013e-05 7.984e-05 9.185e-05 0.00% Castro::do_old_sources() 10 6.116e-05 7.303e-05 9.165e-05 0.00% Castro::construct_old_source() 50 4.723e-05 7.611e-05 8.77e-05 0.00% Castro::do_new_sources() 10 6.119e-05 7.403e-05 8.606e-05 0.00% FabArrayBase::getCPC() 41 5.012e-05 6.772e-05 8.451e-05 0.00% Amr::FinalizeInit() 1 3.3e-06 1.771e-05 8.404e-05 0.00% Amr::writeSmallPlotFile() 1 3.024e-05 4.784e-05 6.699e-05 0.00% Castro::apply_source_to_state() 20 4.356e-05 5.56e-05 6.452e-05 0.00% Castro::subcycle_advance_ctu() 10 4.556e-05 5.139e-05 5.824e-05 0.00% Castro::construct_new_gravity() 10 3.602e-05 4.374e-05 5.667e-05 0.00% Castro::advance() 10 3.577e-05 4.653e-05 5.393e-05 0.00% Castro::construct_old_gravity() 10 3.598e-05 4.235e-05 4.959e-05 0.00% Amr::defBaseLevel() 1 1.775e-05 3.138e-05 4.289e-05 0.00% Castro::enforce_speed_limit() 62 2.544e-05 3.007e-05 3.88e-05 0.00% Castro::check_for_nan() 20 2.297e-05 2.522e-05 2.99e-05 0.00% FabArrayBase::CPC::define() 2 2.081e-05 2.548e-05 2.966e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.658e-05 2.139e-05 2.677e-05 0.00% Gravity::swapTimeLevels() 10 1.174e-05 1.468e-05 2.036e-05 0.00% Castro::post_timestep() 10 1.431e-05 1.715e-05 1.999e-05 0.00% Gravity::set_mass_offset() 10 1.053e-05 1.204e-05 1.429e-05 0.00% Castro::create_source_corrector() 10 8.238e-06 1.065e-05 1.424e-05 0.00% Castro::computeNewDt() 9 9.261e-06 1.169e-05 1.277e-05 0.00% Castro::FluxRegCrseInit 10 7.887e-06 9.425e-06 1.145e-05 0.00% Amr::initSubcycle() 1 8.915e-06 9.561e-06 1.039e-05 0.00% Castro::retry_advance_ctu() 10 4.774e-06 5.987e-06 7.76e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.649e-06 5.755e-06 7.491e-06 0.00% Castro::computeInitialDt() 2 2.59e-06 4.088e-06 5.555e-06 0.00% Amr::InitializeInit() 1 1.959e-06 2.721e-06 5.051e-06 0.00% Castro::post_init() 1 2.677e-06 3.573e-06 5.008e-06 0.00% Castro::post_regrid() 1 1.884e-06 2.756e-06 3.43e-06 0.00% Amr::init() 1 2.192e-06 2.443e-06 2.773e-06 0.00% Castro::FluxRegFineAdd() 10 1.725e-06 2.249e-06 2.75e-06 0.00% Amr::initialInit() 1 1.256e-06 1.703e-06 2.232e-06 0.00% DistributionMapping::Distribute() 1 8.38e-07 1.097e-06 1.491e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.968 3.969 3.969 100.00% Amr::coarseTimeStep() 10 3.766 3.766 3.766 94.87% Amr::timeStep() 10 3.753 3.754 3.754 94.58% Castro::advance() 10 3.737 3.737 3.738 94.18% Castro::subcycle_advance_ctu() 10 3.641 3.646 3.657 92.14% Castro::do_advance_ctu() 10 3.641 3.646 3.657 92.14% Castro::construct_ctu_hydro_source() 10 2.423 2.592 2.806 70.69% Gravity::make_radial_gravity() 21 0.3346 0.3559 0.3775 9.51% Gravity::get_new_grav_vector() 11 0.2277 0.2301 0.2323 5.85% Castro::construct_old_gravity() 10 0.1959 0.2109 0.2284 5.75% Gravity::get_old_grav_vector() 10 0.1951 0.2102 0.2278 5.74% FillPatchIterator::Initialize 41 0.1642 0.1805 0.2064 5.20% Castro::construct_new_gravity() 10 0.203 0.2047 0.2061 5.19% Castro::initialize_do_advance() 10 0.1634 0.1753 0.1825 4.60% Amr::init() 1 0.1793 0.1794 0.1795 4.52% FillPatchSingleLevel 41 0.1242 0.1322 0.1718 4.33% Amr::initialInit() 1 0.1633 0.1636 0.1637 4.13% FabArray::ParallelCopy() 41 0.08621 0.09553 0.1361 3.43% Amr::InitializeInit() 1 0.06029 0.09934 0.1345 3.39% Amr::defBaseLevel() 1 0.06029 0.09934 0.1345 3.39% Castro::expand_state() 10 0.1119 0.1253 0.1344 3.39% Castro::clean_state() 62 0.1159 0.1187 0.1239 3.12% Castro::initData() 1 0.04241 0.08121 0.1166 2.94% Castro::estTimeStep() 21 0.02568 0.06689 0.1076 2.71% Amr::FinalizeInit() 1 0.02888 0.06421 0.103 2.60% FabArray::ParallelCopy_finish() 41 0.03963 0.05121 0.09794 2.47% FabArray::setVal() 143 0.07492 0.08386 0.09378 2.36% Castro::initialize_advance() 10 0.07466 0.08721 0.09225 2.32% amrex::Copy() 193 0.05963 0.07884 0.09017 2.27% Castro::do_new_sources() 10 0.06463 0.06945 0.07645 1.93% Castro::computeInitialDt() 2 0.002047 0.03716 0.07623 1.92% Castro::computeTemp() 63 0.069 0.07135 0.07595 1.91% Castro::reset_internal_energy(MultiFab) 63 0.0494 0.05107 0.0539 1.36% Castro::reset_internal_energy(Fab) 1008 0.0491 0.05075 0.05356 1.35% Castro::do_old_sources() 10 0.04357 0.04983 0.05115 1.29% FabArray::ParallelCopy_nowait() 41 0.03811 0.04424 0.04651 1.17% Castro::normalize_species() 62 0.04086 0.04194 0.04382 1.10% StateDataPhysBCFunct::() 41 0.0335 0.03662 0.03981 1.00% StateData::FillBoundary(geom) 41 0.03341 0.03652 0.0397 1.00% Castro::construct_new_source() 50 0.03206 0.03366 0.0363 0.91% Amr::writePlotFile() 2 0.03117 0.03133 0.03161 0.80% Gravity::interpolate_monopole_grav() 21 0.02811 0.02853 0.02932 0.74% Castro::construct_new_gravity_source() 10 0.02505 0.0267 0.02906 0.73% Castro::post_init() 1 0.02626 0.02653 0.02672 0.67% VisMF::Write(FabArray) 2 0.0131 0.01457 0.01841 0.46% Castro::apply_source_to_state() 20 0.01462 0.01667 0.01762 0.44% FabArray::Saxpy() 20 0.01458 0.01661 0.01756 0.44% Castro::post_timestep() 10 0.01557 0.01587 0.0163 0.41% Castro::check_for_nan() 20 0.01175 0.01324 0.0152 0.38% MultiFab::contains_nan() 20 0.01172 0.01322 0.01517 0.38% FabArray::setDomainBndry() 41 0.008273 0.01207 0.01446 0.36% Castro::construct_old_source() 50 0.007986 0.01199 0.0129 0.32% Castro::Castro() 1 0.01169 0.01193 0.01283 0.32% Castro::construct_old_gravity_source() 10 0.007939 0.01192 0.01282 0.32% Castro::initMFs() 1 0.007117 0.007432 0.009353 0.24% Castro::computeNewDt() 9 0.008553 0.008562 0.00857 0.22% AmrLevel::AmrLevel(dm) 1 0.005937 0.006067 0.006778 0.17% Castro::enforce_min_density() 62 0.005607 0.006187 0.006759 0.17% StateData::define() 4 0.005917 0.006045 0.006757 0.17% Castro::swap_state_time_levels() 10 0.003407 0.004474 0.004827 0.12% Castro::finalize_advance() 10 0.003747 0.00427 0.004816 0.12% Castro::finalize_do_advance() 10 0.0005799 0.001919 0.002477 0.06% Castro::buildMetrics() 1 0.001799 0.001853 0.002115 0.05% Castro::post_regrid() 1 0.001522 0.001599 0.001664 0.04% Amr::InitAmr() 1 0.0002955 0.0003261 0.0004291 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.185e-05 0.0001097 0.0001292 0.00% DistributionMapping::LeastUsedCPUs() 1 7.349e-06 0.0001029 0.0001204 0.00% Castro::enforce_consistent_e() 1 7.563e-05 8.685e-05 0.0001078 0.00% FabArrayBase::getCPC() 41 7.441e-05 9.32e-05 0.0001064 0.00% Amr::writeSmallPlotFile() 1 3.024e-05 4.784e-05 6.699e-05 0.00% Castro::enforce_speed_limit() 62 2.544e-05 3.007e-05 3.88e-05 0.00% FabArrayBase::CPC::define() 2 2.081e-05 2.548e-05 2.966e-05 0.00% Gravity::swapTimeLevels() 10 1.174e-05 1.468e-05 2.036e-05 0.00% Gravity::set_mass_offset() 10 1.053e-05 1.204e-05 1.429e-05 0.00% Castro::create_source_corrector() 10 8.238e-06 1.065e-05 1.424e-05 0.00% Castro::FluxRegCrseInit 10 7.887e-06 9.425e-06 1.145e-05 0.00% Amr::initSubcycle() 1 8.915e-06 9.561e-06 1.039e-05 0.00% Castro::retry_advance_ctu() 10 4.774e-06 5.987e-06 7.76e-06 0.00% Castro::FluxRegFineAdd() 10 1.725e-06 2.249e-06 2.75e-06 0.00% DistributionMapping::Distribute() 1 8.38e-07 1.097e-06 1.491e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-9-g85a89e265369) finalized