MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-10-g1e2154f614e5) initialized Starting run at 05:21:24 UTC on 2023-05-10. Successfully read inputs file ... Castro git describe: 23.05-4-g91b60034d AMReX git describe: 23.05-10-g1e2154f61 Microphysics git describe: 23.05-4-g0685d31f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016712817 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369245383 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.352005445 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.333464985 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.328319373 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.342302636 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.361280288 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31130098 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.311552428 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.3119804 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.310131276 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010223488 seconds Ending run at 05:21:28 UTC on 2023-05-10. Run time = 3.537650503 Run time without initialization = 3.349156305 Average number of zones advanced per microsecond: 0.783 Average number of zones advanced per microsecond per rank: 0.098 TinyProfiler total time across processes [min...avg...max]: 3.537 ... 3.537 ... 3.538 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2889 2.3396 2.3818 67.33% Gravity::make_radial_gravity() 21 0.3144 0.3253 0.3356 9.49% Castro::do_advance_ctu() 10 0.02867 0.0765 0.1314 3.71% Castro::estTimeStep() 21 0.02551 0.07153 0.1166 3.30% Castro::initData() 1 0.03861 0.07852 0.1157 3.27% FabArray::ParallelCopy_finish() 41 0.03392 0.06366 0.09104 2.57% FabArray::setVal() 143 0.0642 0.07464 0.09006 2.55% amrex::Copy() 193 0.06566 0.07379 0.08533 2.41% Castro::reset_internal_energy(Fab) 1008 0.04769 0.0499 0.05396 1.53% Castro::normalize_species() 62 0.04078 0.04246 0.04465 1.26% FabArray::ParallelCopy_nowait() 41 0.03574 0.04094 0.04286 1.21% FillPatchIterator::Initialize 41 0.02849 0.03422 0.04139 1.17% StateData::FillBoundary(geom) 41 0.03275 0.03597 0.03961 1.12% Gravity::interpolate_monopole_grav() 21 0.02779 0.02812 0.02873 0.81% Castro::construct_new_gravity_source() 10 0.02212 0.02414 0.02576 0.73% Castro::initialize_do_advance() 10 0.01202 0.01909 0.02467 0.70% Castro::computeTemp() 63 0.01781 0.01983 0.0212 0.60% FabArray::Saxpy() 20 0.01259 0.01496 0.02074 0.59% VisMF::Write(FabArray) 2 0.01276 0.01385 0.01719 0.49% Castro::initialize_advance() 10 0.008829 0.01162 0.01532 0.43% Amr::writePlotFile() 2 0.00755 0.01117 0.0131 0.37% MultiFab::contains_nan() 20 0.01123 0.01207 0.01302 0.37% FabArray::setDomainBndry() 41 0.008769 0.01116 0.01255 0.35% Castro::construct_old_gravity_source() 10 0.00729 0.01007 0.01071 0.30% Castro::initMFs() 1 0.007273 0.00774 0.009163 0.26% Castro::construct_new_source() 50 0.00589 0.006415 0.006786 0.19% StateData::define() 4 0.005833 0.006059 0.006718 0.19% main() 1 0.005499 0.006059 0.006554 0.19% Amr::coarseTimeStep() 10 0.00182 0.004183 0.006458 0.18% Castro::enforce_min_density() 62 0.005641 0.005972 0.006355 0.18% Castro::swap_state_time_levels() 10 0.003528 0.00455 0.004885 0.14% Gravity::get_new_grav_vector() 11 0.00308 0.00366 0.00414 0.12% Gravity::get_old_grav_vector() 10 0.001787 0.002328 0.002709 0.08% Castro::finalize_do_advance() 10 0.0006615 0.001933 0.002449 0.07% Castro::buildMetrics() 1 0.001658 0.001735 0.001924 0.05% Castro::expand_state() 10 0.000577 0.001025 0.001316 0.04% Amr::InitAmr() 1 0.0002856 0.0003133 0.0004723 0.01% Amr::timeStep() 10 0.0001649 0.0002381 0.0003868 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002839 0.0002987 0.0003188 0.01% DistributionMapping::LeastUsedCPUs() 1 6.806e-06 0.0001701 0.0002014 0.01% Castro::clean_state() 62 0.0001282 0.000144 0.0001618 0.00% Castro::finalize_advance() 10 9.422e-05 0.0001236 0.0001442 0.00% StateDataPhysBCFunct::() 41 8.106e-05 9.992e-05 0.0001194 0.00% Castro::construct_old_source() 50 4.169e-05 6.763e-05 9.84e-05 0.00% Castro::enforce_consistent_e() 1 8.2e-05 8.901e-05 9.74e-05 0.00% Amr::FinalizeInit() 1 4.136e-06 1.47e-05 8.395e-05 0.00% Castro::do_new_sources() 10 5.25e-05 6.605e-05 8.005e-05 0.00% Castro::do_old_sources() 10 4.461e-05 6.181e-05 7.877e-05 0.00% FabArray::ParallelCopy() 41 5.888e-05 6.989e-05 7.667e-05 0.00% Castro::Castro() 1 5.709e-05 6.318e-05 7.595e-05 0.00% FillPatchSingleLevel 41 6.017e-05 7.088e-05 7.528e-05 0.00% Amr::writeSmallPlotFile() 1 2.593e-05 5.493e-05 6.699e-05 0.00% Castro::subcycle_advance_ctu() 10 4.1e-05 5.327e-05 6.604e-05 0.00% Castro::apply_source_to_state() 20 3.232e-05 4.593e-05 6.09e-05 0.00% FabArrayBase::getCPC() 41 3.957e-05 5.159e-05 5.97e-05 0.00% Castro::advance() 10 3.402e-05 4.317e-05 5.341e-05 0.00% Castro::construct_new_gravity() 10 3.625e-05 4.22e-05 5.121e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.175e-05 3.483e-05 4.682e-05 0.00% Castro::construct_old_gravity() 10 3.067e-05 3.9e-05 4.623e-05 0.00% Amr::defBaseLevel() 1 1.662e-05 2.507e-05 3.392e-05 0.00% Castro::enforce_speed_limit() 62 2.376e-05 2.555e-05 2.843e-05 0.00% FabArrayBase::CPC::define() 2 2.085e-05 2.421e-05 2.794e-05 0.00% Castro::post_timestep() 10 1.309e-05 1.912e-05 2.684e-05 0.00% Gravity::swapTimeLevels() 10 9.294e-06 1.335e-05 2.487e-05 0.00% Castro::FluxRegCrseInit 10 7.869e-06 1.538e-05 2.454e-05 0.00% Castro::check_for_nan() 20 1.947e-05 2.138e-05 2.439e-05 0.00% Gravity::set_mass_offset() 10 1.076e-05 1.339e-05 1.729e-05 0.00% Castro::computeNewDt() 9 9.355e-06 1.138e-05 1.333e-05 0.00% Castro::retry_advance_ctu() 10 4.998e-06 6.629e-06 1.296e-05 0.00% Amr::initSubcycle() 1 8.823e-06 9.475e-06 1.048e-05 0.00% Castro::create_source_corrector() 10 7.167e-06 8.229e-06 9.197e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.838e-06 5.355e-06 8.056e-06 0.00% Castro::computeInitialDt() 2 3.893e-06 4.448e-06 5.379e-06 0.00% Amr::InitializeInit() 1 1.929e-06 2.598e-06 5.312e-06 0.00% Castro::post_regrid() 1 1.902e-06 2.872e-06 4.166e-06 0.00% Castro::post_init() 1 2.74e-06 3.256e-06 3.912e-06 0.00% Amr::init() 1 1.884e-06 2.487e-06 3.403e-06 0.00% Castro::FluxRegFineAdd() 10 2.15e-06 2.285e-06 2.418e-06 0.00% Amr::initialInit() 1 1.519e-06 1.684e-06 2.178e-06 0.00% DistributionMapping::Distribute() 1 8.15e-07 1.089e-06 1.942e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.537 3.537 3.538 100.00% Amr::coarseTimeStep() 10 3.332 3.333 3.333 94.20% Amr::timeStep() 10 3.316 3.319 3.321 93.87% Castro::advance() 10 3.3 3.302 3.304 93.39% Castro::subcycle_advance_ctu() 10 3.21 3.221 3.229 91.27% Castro::do_advance_ctu() 10 3.21 3.221 3.229 91.26% Castro::construct_ctu_hydro_source() 10 2.289 2.34 2.382 67.33% Gravity::make_radial_gravity() 21 0.3308 0.3422 0.3501 9.90% Gravity::get_new_grav_vector() 11 0.22 0.2217 0.2232 6.31% Castro::construct_old_gravity() 10 0.1965 0.2047 0.2113 5.97% Gravity::get_old_grav_vector() 10 0.1953 0.2037 0.2106 5.95% FillPatchIterator::Initialize 41 0.1601 0.1863 0.2054 5.81% Castro::construct_new_gravity() 10 0.1921 0.1936 0.1948 5.51% Castro::initialize_do_advance() 10 0.1652 0.1795 0.1935 5.47% Amr::init() 1 0.1878 0.188 0.188 5.32% Amr::initialInit() 1 0.1703 0.1707 0.171 4.83% FillPatchSingleLevel 41 0.1162 0.1409 0.1628 4.60% Castro::expand_state() 10 0.1102 0.13 0.1456 4.12% Amr::InitializeInit() 1 0.06047 0.1008 0.139 3.93% Amr::defBaseLevel() 1 0.06047 0.1008 0.139 3.93% FabArray::ParallelCopy() 41 0.0764 0.1047 0.1269 3.59% Castro::clean_state() 62 0.1131 0.1177 0.1253 3.54% Castro::initData() 1 0.04271 0.08261 0.1194 3.37% Castro::estTimeStep() 21 0.02551 0.07153 0.1166 3.30% Amr::FinalizeInit() 1 0.03183 0.06987 0.1099 3.11% FabArray::ParallelCopy_finish() 41 0.03392 0.06366 0.09104 2.57% FabArray::setVal() 143 0.0642 0.07464 0.09006 2.55% Castro::initialize_advance() 10 0.06913 0.07694 0.08779 2.48% amrex::Copy() 193 0.06566 0.07379 0.08533 2.41% Castro::computeInitialDt() 2 0.002171 0.04038 0.0807 2.28% Castro::do_new_sources() 10 0.0604 0.06598 0.07748 2.19% Castro::computeTemp() 63 0.06579 0.07002 0.07547 2.13% Castro::reset_internal_energy(MultiFab) 63 0.04798 0.05019 0.05427 1.53% Castro::reset_internal_energy(Fab) 1008 0.04769 0.0499 0.05396 1.53% Castro::do_old_sources() 10 0.03952 0.04654 0.05153 1.46% Castro::normalize_species() 62 0.04078 0.04246 0.04465 1.26% FabArray::ParallelCopy_nowait() 41 0.03582 0.04102 0.04294 1.21% StateDataPhysBCFunct::() 41 0.03286 0.03607 0.03969 1.12% StateData::FillBoundary(geom) 41 0.03275 0.03597 0.03961 1.12% Castro::construct_new_source() 50 0.02801 0.03055 0.03255 0.92% Castro::post_init() 1 0.02872 0.02904 0.02929 0.83% Gravity::interpolate_monopole_grav() 21 0.02779 0.02812 0.02873 0.81% Amr::writePlotFile() 2 0.02719 0.02767 0.02799 0.79% Castro::construct_new_gravity_source() 10 0.02212 0.02414 0.02576 0.73% Castro::apply_source_to_state() 20 0.01264 0.01501 0.02077 0.59% FabArray::Saxpy() 20 0.01259 0.01496 0.02074 0.59% VisMF::Write(FabArray) 2 0.01276 0.01385 0.01719 0.49% Castro::post_timestep() 10 0.01531 0.01618 0.01712 0.48% Castro::check_for_nan() 20 0.01125 0.01209 0.01304 0.37% MultiFab::contains_nan() 20 0.01123 0.01207 0.01302 0.37% Castro::Castro() 1 0.01158 0.01188 0.01271 0.36% FabArray::setDomainBndry() 41 0.008769 0.01116 0.01255 0.35% Castro::construct_old_source() 50 0.007332 0.01014 0.0108 0.31% Castro::construct_old_gravity_source() 10 0.00729 0.01007 0.01071 0.30% Castro::initMFs() 1 0.007273 0.00774 0.009163 0.26% Castro::computeNewDt() 9 0.008501 0.00851 0.008516 0.24% AmrLevel::AmrLevel(dm) 1 0.005871 0.006094 0.006758 0.19% StateData::define() 4 0.005833 0.006059 0.006718 0.19% Castro::enforce_min_density() 62 0.005641 0.005972 0.006355 0.18% Castro::finalize_advance() 10 0.002913 0.004394 0.005959 0.17% Castro::swap_state_time_levels() 10 0.003528 0.00455 0.004885 0.14% Castro::finalize_do_advance() 10 0.0006615 0.001933 0.002449 0.07% Castro::buildMetrics() 1 0.001798 0.001885 0.002099 0.06% Castro::post_regrid() 1 0.001571 0.001642 0.001914 0.05% Amr::InitAmr() 1 0.0002944 0.0003228 0.0004828 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.203e-05 0.0001765 0.0002096 0.01% DistributionMapping::LeastUsedCPUs() 1 6.806e-06 0.0001701 0.0002014 0.01% Castro::enforce_consistent_e() 1 8.2e-05 8.901e-05 9.74e-05 0.00% FabArrayBase::getCPC() 41 6.227e-05 7.58e-05 8.3e-05 0.00% Amr::writeSmallPlotFile() 1 2.593e-05 5.493e-05 6.699e-05 0.00% Castro::enforce_speed_limit() 62 2.376e-05 2.555e-05 2.843e-05 0.00% FabArrayBase::CPC::define() 2 2.085e-05 2.421e-05 2.794e-05 0.00% Gravity::swapTimeLevels() 10 9.294e-06 1.335e-05 2.487e-05 0.00% Castro::FluxRegCrseInit 10 7.869e-06 1.538e-05 2.454e-05 0.00% Gravity::set_mass_offset() 10 1.076e-05 1.339e-05 1.729e-05 0.00% Castro::retry_advance_ctu() 10 4.998e-06 6.629e-06 1.296e-05 0.00% Amr::initSubcycle() 1 8.823e-06 9.475e-06 1.048e-05 0.00% Castro::create_source_corrector() 10 7.167e-06 8.229e-06 9.197e-06 0.00% Castro::FluxRegFineAdd() 10 2.15e-06 2.285e-06 2.418e-06 0.00% DistributionMapping::Distribute() 1 8.15e-07 1.089e-06 1.942e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-10-g1e2154f614e5) finalized