MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-10-g1e2154f614e5) initialized Starting run at 05:20:49 UTC on 2023-05-11. Successfully read inputs file ... Castro git describe: 23.05-4-g91b60034d AMReX git describe: 23.05-10-g1e2154f61 Microphysics git describe: 23.05-4-g0685d31f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016243483 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.369072588 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.389006092 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.35384459 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.335589005 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.370042913 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.336777443 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.314510801 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.315282306 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.315258924 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.320292554 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010221169 seconds Ending run at 05:20:53 UTC on 2023-05-11. Run time = 3.643126005 Run time without initialization = 3.43755024 Average number of zones advanced per microsecond: 0.763 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.641 ... 3.642 ... 3.643 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3536 2.3878 2.4487 67.21% Gravity::make_radial_gravity() 21 0.3288 0.3436 0.3601 9.88% Castro::do_advance_ctu() 10 0.04903 0.1115 0.1461 4.01% Castro::initData() 1 0.03889 0.08039 0.1333 3.66% Castro::estTimeStep() 21 0.02189 0.08464 0.1324 3.63% amrex::Copy() 193 0.06189 0.07413 0.08428 2.31% FabArray::setVal() 143 0.06429 0.07065 0.0827 2.27% FabArray::ParallelCopy_finish() 41 0.03584 0.05403 0.07534 2.07% Castro::reset_internal_energy(Fab) 1008 0.04857 0.05077 0.05414 1.49% FabArray::ParallelCopy_nowait() 41 0.03585 0.04185 0.04435 1.22% Castro::normalize_species() 62 0.0408 0.04188 0.04386 1.20% StateData::FillBoundary(geom) 41 0.03434 0.03718 0.04253 1.17% FillPatchIterator::Initialize 41 0.03018 0.0355 0.03792 1.04% Gravity::interpolate_monopole_grav() 21 0.028 0.02868 0.02975 0.82% Castro::construct_new_gravity_source() 10 0.02285 0.02484 0.02795 0.77% Castro::computeTemp() 63 0.01998 0.02039 0.02124 0.58% Castro::initialize_do_advance() 10 0.01214 0.01864 0.02055 0.56% VisMF::Write(FabArray) 2 0.01287 0.0138 0.0168 0.46% Castro::initialize_advance() 10 0.009245 0.01192 0.01532 0.42% FabArray::Saxpy() 20 0.01234 0.01401 0.01459 0.40% FabArray::setDomainBndry() 41 0.009225 0.01204 0.01331 0.37% MultiFab::contains_nan() 20 0.01094 0.01193 0.0127 0.35% Amr::writePlotFile() 2 0.006839 0.01023 0.01187 0.33% Castro::construct_old_gravity_source() 10 0.007423 0.01018 0.01083 0.30% Castro::initMFs() 1 0.007082 0.007591 0.008243 0.23% main() 1 0.004959 0.006091 0.006876 0.19% StateData::define() 4 0.005741 0.006175 0.006617 0.18% Castro::construct_new_source() 50 0.005559 0.006217 0.006485 0.18% Castro::enforce_min_density() 62 0.005744 0.006064 0.006396 0.18% Castro::swap_state_time_levels() 10 0.003406 0.004591 0.005436 0.15% Gravity::get_new_grav_vector() 11 0.003052 0.003873 0.004224 0.12% Gravity::get_old_grav_vector() 10 0.001833 0.002502 0.002855 0.08% Amr::coarseTimeStep() 10 0.001128 0.002333 0.002835 0.08% Castro::buildMetrics() 1 0.001671 0.001825 0.001958 0.05% Castro::finalize_do_advance() 10 0.0005804 0.001471 0.001729 0.05% Castro::expand_state() 10 0.0006499 0.0007714 0.0009308 0.03% Amr::timeStep() 10 0.0001799 0.0002384 0.0004824 0.01% Amr::InitAmr() 1 0.0002839 0.0003147 0.000416 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002883 0.0003008 0.0003366 0.01% Castro::clean_state() 62 0.0001357 0.0001434 0.0001513 0.00% Castro::finalize_advance() 10 8.43e-05 0.0001053 0.0001276 0.00% StateDataPhysBCFunct::() 41 8.481e-05 9.676e-05 0.0001274 0.00% DistributionMapping::LeastUsedCPUs() 1 6.643e-06 0.0001018 0.0001244 0.00% Castro::enforce_consistent_e() 1 8.654e-05 9.309e-05 0.0001098 0.00% Castro::Castro() 1 5.763e-05 7.11e-05 9.398e-05 0.00% Amr::FinalizeInit() 1 4.672e-06 1.482e-05 8.323e-05 0.00% FabArray::ParallelCopy() 41 6.51e-05 7.336e-05 7.999e-05 0.00% FillPatchSingleLevel 41 6.502e-05 7.015e-05 7.49e-05 0.00% Castro::do_new_sources() 10 5.243e-05 6.288e-05 7.407e-05 0.00% Castro::do_old_sources() 10 4.86e-05 5.975e-05 7.237e-05 0.00% Castro::construct_old_source() 50 4.864e-05 6.084e-05 7.107e-05 0.00% FabArrayBase::getCPC() 41 4.228e-05 5.368e-05 6.49e-05 0.00% Amr::writeSmallPlotFile() 1 2.598e-05 4.489e-05 6.083e-05 0.00% Castro::subcycle_advance_ctu() 10 3.569e-05 4.295e-05 5.232e-05 0.00% Castro::apply_source_to_state() 20 3.675e-05 4.339e-05 5.132e-05 0.00% Castro::construct_new_gravity() 10 3.614e-05 3.907e-05 4.812e-05 0.00% Castro::construct_old_gravity() 10 3.057e-05 3.911e-05 4.672e-05 0.00% Castro::advance() 10 3.438e-05 3.86e-05 4.328e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.218e-05 2.826e-05 3.397e-05 0.00% FabArrayBase::CPC::define() 2 2.041e-05 2.383e-05 3.072e-05 0.00% Castro::enforce_speed_limit() 62 2.402e-05 2.554e-05 2.805e-05 0.00% Amr::defBaseLevel() 1 1.854e-05 2.332e-05 2.802e-05 0.00% Castro::check_for_nan() 20 2.042e-05 2.233e-05 2.474e-05 0.00% Gravity::swapTimeLevels() 10 8.889e-06 1.37e-05 2.287e-05 0.00% Castro::post_timestep() 10 1.304e-05 1.508e-05 1.646e-05 0.00% Gravity::set_mass_offset() 10 9.782e-06 1.113e-05 1.381e-05 0.00% Castro::computeNewDt() 9 9.16e-06 1.076e-05 1.268e-05 0.00% Amr::initSubcycle() 1 8.718e-06 9.663e-06 1.052e-05 0.00% Castro::create_source_corrector() 10 7.686e-06 8.814e-06 1.014e-05 0.00% Castro::FluxRegCrseInit 10 6.878e-06 8.022e-06 9.461e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.215e-06 5.917e-06 9.22e-06 0.00% Castro::retry_advance_ctu() 10 4.032e-06 4.926e-06 5.656e-06 0.00% Castro::post_init() 1 3.183e-06 3.736e-06 5.085e-06 0.00% Amr::InitializeInit() 1 2.008e-06 2.668e-06 4.744e-06 0.00% Castro::computeInitialDt() 2 3.351e-06 4.232e-06 4.615e-06 0.00% Castro::post_regrid() 1 2.305e-06 2.912e-06 3.905e-06 0.00% Amr::init() 1 1.837e-06 2.371e-06 2.747e-06 0.00% Castro::FluxRegFineAdd() 10 1.939e-06 2.211e-06 2.619e-06 0.00% Amr::initialInit() 1 1.323e-06 1.624e-06 1.852e-06 0.00% DistributionMapping::Distribute() 1 8.8e-07 1.049e-06 1.264e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.641 3.642 3.643 100.00% Amr::coarseTimeStep() 10 3.421 3.421 3.421 93.89% Amr::timeStep() 10 3.407 3.408 3.409 93.57% Castro::advance() 10 3.391 3.391 3.392 93.11% Castro::subcycle_advance_ctu() 10 3.304 3.313 3.319 91.10% Castro::do_advance_ctu() 10 3.304 3.313 3.319 91.10% Castro::construct_ctu_hydro_source() 10 2.354 2.388 2.449 67.21% Gravity::make_radial_gravity() 21 0.3465 0.3608 0.3746 10.28% Castro::construct_old_gravity() 10 0.2106 0.2206 0.2315 6.35% Gravity::get_old_grav_vector() 10 0.2098 0.2198 0.2309 6.34% Gravity::get_new_grav_vector() 11 0.2237 0.226 0.2278 6.25% Amr::init() 1 0.205 0.2051 0.2051 5.63% Castro::construct_new_gravity() 10 0.1966 0.1981 0.1992 5.47% FillPatchIterator::Initialize 41 0.1717 0.1809 0.1934 5.31% Amr::initialInit() 1 0.1881 0.1885 0.1888 5.18% Castro::initialize_do_advance() 10 0.1619 0.1724 0.1826 5.01% Amr::InitializeInit() 1 0.05978 0.1025 0.1567 4.30% Amr::defBaseLevel() 1 0.05978 0.1025 0.1567 4.30% FillPatchSingleLevel 41 0.1226 0.1334 0.1459 4.00% Castro::initData() 1 0.04303 0.08447 0.1374 3.77% Castro::expand_state() 10 0.1133 0.1228 0.1331 3.65% Castro::estTimeStep() 21 0.02189 0.08464 0.1324 3.63% Amr::FinalizeInit() 1 0.03209 0.08602 0.1287 3.53% Castro::clean_state() 62 0.1152 0.1186 0.1252 3.44% FabArray::ParallelCopy() 41 0.08032 0.09603 0.1113 3.06% Castro::computeInitialDt() 2 0.002374 0.0566 0.09937 2.73% amrex::Copy() 193 0.06189 0.07413 0.08428 2.31% Castro::initialize_advance() 10 0.06882 0.07448 0.08381 2.30% FabArray::setVal() 143 0.06429 0.07065 0.0827 2.27% Castro::computeTemp() 63 0.06891 0.07146 0.0757 2.08% FabArray::ParallelCopy_finish() 41 0.03584 0.05403 0.07534 2.07% Castro::do_new_sources() 10 0.06051 0.06538 0.07361 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04886 0.05107 0.05446 1.49% Castro::reset_internal_energy(Fab) 1008 0.04857 0.05077 0.05414 1.49% Castro::do_old_sources() 10 0.04117 0.04547 0.04861 1.33% FabArray::ParallelCopy_nowait() 41 0.03593 0.04193 0.04441 1.22% Castro::normalize_species() 62 0.0408 0.04188 0.04386 1.20% StateDataPhysBCFunct::() 41 0.03447 0.03727 0.04262 1.17% StateData::FillBoundary(geom) 41 0.03434 0.03718 0.04253 1.17% Castro::construct_new_source() 50 0.02898 0.03105 0.03444 0.95% Gravity::interpolate_monopole_grav() 21 0.028 0.02868 0.02975 0.82% Castro::post_init() 1 0.02873 0.029 0.02913 0.80% Castro::construct_new_gravity_source() 10 0.02285 0.02484 0.02795 0.77% Amr::writePlotFile() 2 0.02659 0.02688 0.02729 0.75% Castro::post_timestep() 10 0.01561 0.01615 0.01693 0.46% VisMF::Write(FabArray) 2 0.01287 0.0138 0.0168 0.46% Castro::apply_source_to_state() 20 0.01238 0.01405 0.01464 0.40% FabArray::Saxpy() 20 0.01234 0.01401 0.01459 0.40% FabArray::setDomainBndry() 41 0.009225 0.01204 0.01331 0.37% Castro::check_for_nan() 20 0.01097 0.01195 0.01272 0.35% MultiFab::contains_nan() 20 0.01094 0.01193 0.0127 0.35% Castro::Castro() 1 0.01082 0.01171 0.01257 0.34% Castro::construct_old_source() 50 0.007472 0.01024 0.01089 0.30% Castro::construct_old_gravity_source() 10 0.007423 0.01018 0.01083 0.30% Castro::computeNewDt() 9 0.009048 0.009052 0.009057 0.25% Castro::initMFs() 1 0.007082 0.007591 0.008243 0.23% AmrLevel::AmrLevel(dm) 1 0.005768 0.006204 0.006639 0.18% StateData::define() 4 0.005741 0.006175 0.006617 0.18% Castro::enforce_min_density() 62 0.005744 0.006064 0.006396 0.18% Castro::swap_state_time_levels() 10 0.003406 0.004591 0.005436 0.15% Castro::finalize_advance() 10 0.003032 0.003583 0.004043 0.11% Castro::buildMetrics() 1 0.001801 0.001967 0.002113 0.06% Castro::post_regrid() 1 0.001514 0.001639 0.001831 0.05% Castro::finalize_do_advance() 10 0.0005804 0.001471 0.001729 0.05% Amr::InitAmr() 1 0.0002933 0.0003244 0.0004248 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.457e-05 0.0001088 0.0001321 0.00% DistributionMapping::LeastUsedCPUs() 1 6.643e-06 0.0001018 0.0001244 0.00% Castro::enforce_consistent_e() 1 8.654e-05 9.309e-05 0.0001098 0.00% FabArrayBase::getCPC() 41 6.573e-05 7.75e-05 8.715e-05 0.00% Amr::writeSmallPlotFile() 1 2.598e-05 4.489e-05 6.083e-05 0.00% FabArrayBase::CPC::define() 2 2.041e-05 2.383e-05 3.072e-05 0.00% Castro::enforce_speed_limit() 62 2.402e-05 2.554e-05 2.805e-05 0.00% Gravity::swapTimeLevels() 10 8.889e-06 1.37e-05 2.287e-05 0.00% Gravity::set_mass_offset() 10 9.782e-06 1.113e-05 1.381e-05 0.00% Amr::initSubcycle() 1 8.718e-06 9.663e-06 1.052e-05 0.00% Castro::create_source_corrector() 10 7.686e-06 8.814e-06 1.014e-05 0.00% Castro::FluxRegCrseInit 10 6.878e-06 8.022e-06 9.461e-06 0.00% Castro::retry_advance_ctu() 10 4.032e-06 4.926e-06 5.656e-06 0.00% Castro::FluxRegFineAdd() 10 1.939e-06 2.211e-06 2.619e-06 0.00% DistributionMapping::Distribute() 1 8.8e-07 1.049e-06 1.264e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-10-g1e2154f614e5) finalized