MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-11-gab567b81cbf1) initialized Starting run at 14:11:59 UTC on 2023-05-12. Successfully read inputs file ... Castro git describe: 23.05-5-g49b9a6d7e AMReX git describe: 23.05-11-gab567b81c Microphysics git describe: 23.05-4-g0685d31f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018076639 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.370229399 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.361044853 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.335413434 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.334828836 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.375107008 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.346891384 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.31893541 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.320607567 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.316471855 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.318462482 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010823563 seconds Ending run at 14:12:02 UTC on 2023-05-12. Run time = 3.604393658 Run time without initialization = 3.415674313 Average number of zones advanced per microsecond: 0.767 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.604 ... 3.604 ... 3.604 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2915 2.3786 2.4478 67.91% Gravity::make_radial_gravity() 21 0.3226 0.3377 0.3468 9.62% Castro::do_advance_ctu() 10 0.02392 0.09911 0.1845 5.12% Castro::estTimeStep() 21 0.02436 0.07413 0.1206 3.35% Castro::initData() 1 0.03911 0.07795 0.1172 3.25% FabArray::setVal() 143 0.06702 0.07577 0.09088 2.52% amrex::Copy() 193 0.06745 0.07314 0.08107 2.25% FabArray::ParallelCopy_finish() 41 0.03518 0.0504 0.06314 1.75% Castro::reset_internal_energy(Fab) 1008 0.04831 0.05054 0.05283 1.47% Castro::normalize_species() 62 0.0413 0.04201 0.0442 1.23% FabArray::ParallelCopy_nowait() 41 0.03765 0.04163 0.04339 1.20% StateData::FillBoundary(geom) 41 0.03328 0.03646 0.04077 1.13% FillPatchIterator::Initialize 41 0.03043 0.034 0.03642 1.01% Castro::construct_new_gravity_source() 10 0.02295 0.02559 0.02999 0.83% Gravity::interpolate_monopole_grav() 21 0.02791 0.02841 0.0294 0.82% Castro::initialize_do_advance() 10 0.0131 0.01852 0.02202 0.61% Castro::computeTemp() 63 0.01953 0.02026 0.0211 0.59% VisMF::Write(FabArray) 2 0.0141 0.01519 0.01915 0.53% Castro::initialize_advance() 10 0.009857 0.01292 0.01601 0.44% FabArray::Saxpy() 20 0.01332 0.01446 0.0152 0.42% MultiFab::contains_nan() 20 0.01155 0.01243 0.01371 0.38% FabArray::setDomainBndry() 41 0.009339 0.01151 0.0129 0.36% Amr::writePlotFile() 2 0.006981 0.01102 0.01235 0.34% Castro::construct_old_gravity_source() 10 0.007665 0.01042 0.01104 0.31% Castro::initMFs() 1 0.007087 0.007375 0.009265 0.26% StateData::define() 4 0.005913 0.006033 0.006701 0.19% Castro::construct_new_source() 50 0.006098 0.00635 0.006647 0.18% Castro::enforce_min_density() 62 0.005698 0.006037 0.006318 0.18% Gravity::get_new_grav_vector() 11 0.003186 0.003986 0.00631 0.18% main() 1 0.005615 0.005917 0.006126 0.17% Castro::swap_state_time_levels() 10 0.003507 0.004801 0.005176 0.14% Amr::coarseTimeStep() 10 0.001097 0.002335 0.003084 0.09% Gravity::get_old_grav_vector() 10 0.001859 0.002341 0.0027 0.07% Castro::finalize_do_advance() 10 0.0006188 0.001781 0.002252 0.06% Castro::buildMetrics() 1 0.001665 0.001716 0.001922 0.05% Castro::expand_state() 10 0.0007617 0.0009612 0.001205 0.03% Amr::timeStep() 10 0.0001832 0.000259 0.0005343 0.01% Amr::InitAmr() 1 0.0002902 0.0003286 0.0004448 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002973 0.0003112 0.00034 0.01% Castro::clean_state() 62 0.0001475 0.0001616 0.0001862 0.01% DistributionMapping::LeastUsedCPUs() 1 6.87e-06 0.0001092 0.0001595 0.00% StateDataPhysBCFunct::() 41 8.766e-05 0.0001076 0.0001329 0.00% Castro::finalize_advance() 10 9.951e-05 0.0001059 0.0001174 0.00% Castro::enforce_consistent_e() 1 8.391e-05 8.914e-05 0.0001024 0.00% Castro::Castro() 1 5.28e-05 7.417e-05 9.708e-05 0.00% Amr::FinalizeInit() 1 4.027e-06 1.473e-05 8.323e-05 0.00% FillPatchSingleLevel 41 6.376e-05 7.194e-05 7.975e-05 0.00% FabArray::ParallelCopy() 41 6.422e-05 7.133e-05 7.972e-05 0.00% Castro::do_new_sources() 10 5.554e-05 6.916e-05 7.868e-05 0.00% Castro::construct_old_source() 50 4.954e-05 6.734e-05 7.753e-05 0.00% Castro::do_old_sources() 10 5.217e-05 6.362e-05 7.283e-05 0.00% FabArrayBase::getCPC() 41 4.641e-05 6.287e-05 7.033e-05 0.00% Amr::writeSmallPlotFile() 1 2.773e-05 5.446e-05 6.632e-05 0.00% Castro::apply_source_to_state() 20 4.03e-05 5.082e-05 5.855e-05 0.00% Castro::subcycle_advance_ctu() 10 3.945e-05 4.932e-05 5.823e-05 0.00% Castro::construct_new_gravity() 10 3.618e-05 4.473e-05 5.273e-05 0.00% Castro::advance() 10 3.938e-05 4.383e-05 4.923e-05 0.00% Castro::construct_old_gravity() 10 3.929e-05 4.248e-05 4.58e-05 0.00% Castro::enforce_speed_limit() 62 2.549e-05 3.067e-05 3.942e-05 0.00% Amr::defBaseLevel() 1 1.989e-05 2.702e-05 3.336e-05 0.00% FabArrayBase::CPC::define() 2 2.215e-05 2.598e-05 3.232e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.573e-05 2.248e-05 2.718e-05 0.00% Castro::check_for_nan() 20 2.062e-05 2.455e-05 2.677e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.572e-05 1.957e-05 0.00% Gravity::swapTimeLevels() 10 1.233e-05 1.457e-05 1.643e-05 0.00% Castro::computeNewDt() 9 9.061e-06 1.276e-05 1.526e-05 0.00% Gravity::set_mass_offset() 10 1.006e-05 1.265e-05 1.42e-05 0.00% Castro::post_init() 1 2.854e-06 5.427e-06 1.177e-05 0.00% Castro::create_source_corrector() 10 7.963e-06 9.131e-06 1.12e-05 0.00% Castro::FluxRegCrseInit 10 7.282e-06 8.953e-06 1.076e-05 0.00% Amr::initSubcycle() 1 8.801e-06 9.252e-06 1.037e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.782e-06 4.979e-06 8.041e-06 0.00% Castro::retry_advance_ctu() 10 5.181e-06 5.751e-06 6.306e-06 0.00% Castro::post_regrid() 1 1.796e-06 3.228e-06 5.192e-06 0.00% Castro::computeInitialDt() 2 3.102e-06 4.117e-06 4.878e-06 0.00% Amr::InitializeInit() 1 2.073e-06 2.651e-06 4.388e-06 0.00% Amr::init() 1 2.041e-06 2.302e-06 2.727e-06 0.00% Castro::FluxRegFineAdd() 10 1.944e-06 2.322e-06 2.6e-06 0.00% Amr::initialInit() 1 1.699e-06 1.97e-06 2.3e-06 0.00% DistributionMapping::Distribute() 1 8.35e-07 9.349e-07 1.171e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.604 3.604 3.604 100.00% Amr::coarseTimeStep() 10 3.399 3.399 3.399 94.30% Amr::timeStep() 10 3.386 3.387 3.388 93.99% Castro::advance() 10 3.369 3.37 3.371 93.53% Castro::subcycle_advance_ctu() 10 3.276 3.288 3.297 91.46% Castro::do_advance_ctu() 10 3.276 3.288 3.297 91.46% Castro::construct_ctu_hydro_source() 10 2.291 2.379 2.448 67.91% Gravity::make_radial_gravity() 21 0.3384 0.3547 0.3639 10.10% Gravity::get_new_grav_vector() 11 0.2275 0.2327 0.2352 6.53% Castro::construct_old_gravity() 10 0.1947 0.2058 0.2132 5.91% Gravity::get_old_grav_vector() 10 0.194 0.2051 0.2126 5.90% Castro::construct_new_gravity() 10 0.2027 0.2071 0.209 5.80% Amr::init() 1 0.1881 0.1882 0.1883 5.22% FillPatchIterator::Initialize 41 0.1529 0.1743 0.1864 5.17% Castro::initialize_do_advance() 10 0.1559 0.1694 0.181 5.02% Amr::initialInit() 1 0.1697 0.1699 0.17 4.72% Amr::InitializeInit() 1 0.06108 0.1001 0.1404 3.90% Amr::defBaseLevel() 1 0.06108 0.1001 0.1404 3.90% FillPatchSingleLevel 41 0.1117 0.1288 0.1377 3.82% Castro::expand_state() 10 0.1047 0.1204 0.1333 3.70% Castro::clean_state() 62 0.1152 0.1184 0.124 3.44% Castro::initData() 1 0.04324 0.08203 0.1208 3.35% Castro::estTimeStep() 21 0.02436 0.07413 0.1206 3.35% Amr::FinalizeInit() 1 0.0295 0.06972 0.1088 3.02% FabArray::ParallelCopy() 41 0.07631 0.09219 0.1009 2.80% FabArray::setVal() 143 0.06702 0.07577 0.09088 2.52% Castro::initialize_advance() 10 0.06975 0.07904 0.09044 2.51% Castro::computeInitialDt() 2 0.002265 0.04263 0.08159 2.26% amrex::Copy() 193 0.06745 0.07314 0.08107 2.25% Castro::do_new_sources() 10 0.05975 0.06735 0.07883 2.19% Castro::computeTemp() 63 0.06858 0.07111 0.07424 2.06% FabArray::ParallelCopy_finish() 41 0.03518 0.0504 0.06314 1.75% Castro::reset_internal_energy(MultiFab) 63 0.04862 0.05085 0.05314 1.47% Castro::reset_internal_energy(Fab) 1008 0.04831 0.05054 0.05283 1.47% Castro::do_old_sources() 10 0.04288 0.04588 0.04703 1.30% Castro::normalize_species() 62 0.0413 0.04201 0.0442 1.23% FabArray::ParallelCopy_nowait() 41 0.03773 0.04172 0.04347 1.21% StateDataPhysBCFunct::() 41 0.0334 0.03656 0.0409 1.13% StateData::FillBoundary(geom) 41 0.03328 0.03646 0.04077 1.13% Castro::construct_new_source() 50 0.02912 0.03194 0.03663 1.02% Castro::construct_new_gravity_source() 10 0.02295 0.02559 0.02999 0.83% Amr::writePlotFile() 2 0.02912 0.02926 0.02947 0.82% Gravity::interpolate_monopole_grav() 21 0.02791 0.02841 0.0294 0.82% Castro::post_init() 1 0.02648 0.0267 0.02687 0.75% VisMF::Write(FabArray) 2 0.0141 0.01519 0.01915 0.53% Castro::post_timestep() 10 0.01596 0.01609 0.01619 0.45% Castro::apply_source_to_state() 20 0.01338 0.01451 0.01525 0.42% FabArray::Saxpy() 20 0.01332 0.01446 0.0152 0.42% Castro::check_for_nan() 20 0.01157 0.01245 0.01374 0.38% MultiFab::contains_nan() 20 0.01155 0.01243 0.01371 0.38% FabArray::setDomainBndry() 41 0.009339 0.01151 0.0129 0.36% Castro::Castro() 1 0.01169 0.0119 0.01281 0.36% Castro::construct_old_source() 50 0.007714 0.01048 0.01112 0.31% Castro::construct_old_gravity_source() 10 0.007665 0.01042 0.01104 0.31% Castro::initMFs() 1 0.007087 0.007375 0.009265 0.26% Castro::computeNewDt() 9 0.008624 0.008641 0.008646 0.24% AmrLevel::AmrLevel(dm) 1 0.005928 0.006055 0.006723 0.19% StateData::define() 4 0.005913 0.006033 0.006701 0.19% Castro::enforce_min_density() 62 0.005698 0.006037 0.006318 0.18% Castro::swap_state_time_levels() 10 0.003507 0.004801 0.005176 0.14% Castro::finalize_advance() 10 0.002951 0.003567 0.004607 0.13% Castro::finalize_do_advance() 10 0.0006188 0.001781 0.002252 0.06% Castro::buildMetrics() 1 0.001803 0.001861 0.0021 0.06% Castro::post_regrid() 1 0.001587 0.001666 0.001724 0.05% Amr::InitAmr() 1 0.0002997 0.0003379 0.0004539 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.15e-05 0.0001151 0.0001682 0.00% DistributionMapping::LeastUsedCPUs() 1 6.87e-06 0.0001092 0.0001595 0.00% Castro::enforce_consistent_e() 1 8.391e-05 8.914e-05 0.0001024 0.00% FabArrayBase::getCPC() 41 7.864e-05 8.885e-05 9.809e-05 0.00% Amr::writeSmallPlotFile() 1 2.773e-05 5.446e-05 6.632e-05 0.00% Castro::enforce_speed_limit() 62 2.549e-05 3.067e-05 3.942e-05 0.00% FabArrayBase::CPC::define() 2 2.215e-05 2.598e-05 3.232e-05 0.00% Gravity::swapTimeLevels() 10 1.233e-05 1.457e-05 1.643e-05 0.00% Gravity::set_mass_offset() 10 1.006e-05 1.265e-05 1.42e-05 0.00% Castro::create_source_corrector() 10 7.963e-06 9.131e-06 1.12e-05 0.00% Castro::FluxRegCrseInit 10 7.282e-06 8.953e-06 1.076e-05 0.00% Amr::initSubcycle() 1 8.801e-06 9.252e-06 1.037e-05 0.00% Castro::retry_advance_ctu() 10 5.181e-06 5.751e-06 6.306e-06 0.00% Castro::FluxRegFineAdd() 10 1.944e-06 2.322e-06 2.6e-06 0.00% DistributionMapping::Distribute() 1 8.35e-07 9.349e-07 1.171e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-11-gab567b81cbf1) finalized