MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (23.05-11-gab567b81cbf1) initialized Starting run at 05:35:47 UTC on 2023-05-12. Successfully read inputs file ... Castro git describe: 23.05-4-g91b60034d AMReX git describe: 23.05-11-gab567b81c Microphysics git describe: 23.05-4-g0685d31f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016358023 seconds [Level 0 step 1] ADVANCE with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells [STEP 1] Coarse TimeStep time: 0.360032506 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [Level 0 step 2] ADVANCE with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells [STEP 2] Coarse TimeStep time: 0.366628058 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [Level 0 step 3] ADVANCE with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells [STEP 3] Coarse TimeStep time: 0.351944202 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [Level 0 step 4] ADVANCE with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells [STEP 4] Coarse TimeStep time: 0.336812005 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [Level 0 step 5] ADVANCE with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells [STEP 5] Coarse TimeStep time: 0.369285685 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [Level 0 step 6] ADVANCE with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells [STEP 6] Coarse TimeStep time: 0.34011994 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [Level 0 step 7] ADVANCE with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells [STEP 7] Coarse TimeStep time: 0.312708259 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [Level 0 step 8] ADVANCE with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells [STEP 8] Coarse TimeStep time: 0.313141088 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [Level 0 step 9] ADVANCE with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells [STEP 9] Coarse TimeStep time: 0.314476381 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [Level 0 step 10] ADVANCE with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells [STEP 10] Coarse TimeStep time: 0.315481458 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.052082933 seconds Ending run at 05:35:51 UTC on 2023-05-12. Run time = 3.650362535 Run time without initialization = 3.440329596 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.649 ... 3.65 ... 3.65 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2774 2.3700 2.4302 66.57% Gravity::make_radial_gravity() 21 0.3225 0.3377 0.3608 9.88% Castro::do_advance_ctu() 10 0.03955 0.1029 0.1994 5.46% Castro::initData() 1 0.03837 0.08322 0.137 3.75% Castro::estTimeStep() 21 0.02316 0.08687 0.1352 3.70% FabArray::setVal() 143 0.06275 0.07058 0.08329 2.28% amrex::Copy() 193 0.05876 0.07222 0.08156 2.23% FabArray::ParallelCopy_finish() 41 0.03424 0.0518 0.08102 2.22% Castro::reset_internal_energy(Fab) 1008 0.0484 0.05 0.05327 1.46% Amr::writePlotFile() 2 0.04845 0.05167 0.05257 1.44% FabArray::ParallelCopy_nowait() 41 0.03577 0.04196 0.04354 1.19% Castro::normalize_species() 62 0.04162 0.04227 0.04348 1.19% StateData::FillBoundary(geom) 41 0.03223 0.03638 0.03946 1.08% FillPatchIterator::Initialize 41 0.02939 0.03488 0.03666 1.00% Gravity::interpolate_monopole_grav() 21 0.02806 0.02854 0.02911 0.80% Castro::construct_new_gravity_source() 10 0.02241 0.02508 0.02835 0.78% Castro::initialize_do_advance() 10 0.01202 0.01847 0.02168 0.59% Castro::computeTemp() 63 0.0173 0.01979 0.021 0.58% VisMF::Write(FabArray) 2 0.01356 0.01429 0.01794 0.49% Castro::initialize_advance() 10 0.008546 0.01142 0.01486 0.41% FabArray::Saxpy() 20 0.01208 0.01369 0.01475 0.40% MultiFab::contains_nan() 20 0.01094 0.01199 0.01286 0.35% FabArray::setDomainBndry() 41 0.008556 0.01163 0.01269 0.35% Castro::construct_old_gravity_source() 10 0.007204 0.01007 0.01078 0.30% Castro::initMFs() 1 0.007028 0.007687 0.008094 0.22% main() 1 0.005271 0.006408 0.006934 0.19% StateData::define() 4 0.005908 0.006449 0.006697 0.18% Castro::construct_new_source() 50 0.005543 0.006153 0.006386 0.17% Gravity::get_new_grav_vector() 11 0.002904 0.004221 0.006258 0.17% Castro::enforce_min_density() 62 0.005606 0.00592 0.006162 0.17% Castro::swap_state_time_levels() 10 0.002267 0.004642 0.005453 0.15% Amr::coarseTimeStep() 10 0.001001 0.002083 0.002829 0.08% Gravity::get_old_grav_vector() 10 0.00156 0.002337 0.002658 0.07% Castro::buildMetrics() 1 0.001701 0.001832 0.001944 0.05% Castro::finalize_do_advance() 10 0.0006807 0.001517 0.001939 0.05% Castro::expand_state() 10 0.0006903 0.0008216 0.001068 0.03% Amr::timeStep() 10 0.000175 0.0002404 0.0004436 0.01% Amr::InitAmr() 1 0.0002975 0.0003303 0.0004259 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002886 0.000304 0.0003228 0.01% Castro::clean_state() 62 0.0001424 0.0001511 0.0001691 0.00% DistributionMapping::LeastUsedCPUs() 1 7.791e-06 0.0001042 0.0001498 0.00% StateDataPhysBCFunct::() 41 8.2e-05 0.000107 0.0001444 0.00% Castro::finalize_advance() 10 8.895e-05 0.0001046 0.0001363 0.00% Castro::enforce_consistent_e() 1 7.665e-05 8.944e-05 0.0001066 0.00% FabArray::ParallelCopy() 41 6.363e-05 7.69e-05 9.289e-05 0.00% FillPatchSingleLevel 41 6.111e-05 7.237e-05 8.238e-05 0.00% Amr::writeSmallPlotFile() 1 2.842e-05 5.533e-05 7.834e-05 0.00% Castro::Castro() 1 5.837e-05 6.456e-05 7.655e-05 0.00% Castro::do_new_sources() 10 5.482e-05 6.553e-05 7.65e-05 0.00% Castro::do_old_sources() 10 5.341e-05 6.331e-05 7.65e-05 0.00% Castro::construct_old_source() 50 4.971e-05 6.433e-05 7.636e-05 0.00% Amr::FinalizeInit() 1 3.942e-06 1.29e-05 7.113e-05 0.00% FabArrayBase::getCPC() 41 4.372e-05 5.32e-05 6.808e-05 0.00% Castro::subcycle_advance_ctu() 10 3.446e-05 4.774e-05 5.863e-05 0.00% Castro::advance() 10 3.612e-05 4.472e-05 5.473e-05 0.00% Castro::apply_source_to_state() 20 3.87e-05 4.508e-05 5.271e-05 0.00% Castro::construct_new_gravity() 10 3.44e-05 4.136e-05 5.083e-05 0.00% Castro::construct_old_gravity() 10 3.773e-05 4.232e-05 4.993e-05 0.00% Castro::enforce_speed_limit() 62 2.337e-05 2.76e-05 3.417e-05 0.00% AmrLevel::AmrLevel(dm) 1 2.002e-05 2.613e-05 3.164e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.52e-05 3.081e-05 0.00% Castro::check_for_nan() 20 1.953e-05 2.328e-05 2.665e-05 0.00% Amr::defBaseLevel() 1 1.801e-05 2.068e-05 2.397e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.546e-05 1.624e-05 0.00% Gravity::set_mass_offset() 10 9.347e-06 1.198e-05 1.491e-05 0.00% Gravity::swapTimeLevels() 10 9.888e-06 1.267e-05 1.48e-05 0.00% Castro::computeNewDt() 9 1.002e-05 1.172e-05 1.396e-05 0.00% Amr::InitializeInit() 1 2.216e-06 3.584e-06 1.251e-05 0.00% Castro::create_source_corrector() 10 7.872e-06 9.2e-06 1.101e-05 0.00% Amr::initSubcycle() 1 9.097e-06 1.004e-05 1.061e-05 0.00% Castro::FluxRegCrseInit 10 7.043e-06 8.098e-06 8.673e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.081e-06 4.829e-06 6.565e-06 0.00% Castro::retry_advance_ctu() 10 4.787e-06 5.28e-06 5.971e-06 0.00% Castro::computeInitialDt() 2 3.814e-06 4.093e-06 4.404e-06 0.00% Castro::post_init() 1 3.019e-06 3.416e-06 4.252e-06 0.00% Castro::post_regrid() 1 2.065e-06 2.777e-06 3.941e-06 0.00% Castro::FluxRegFineAdd() 10 2.09e-06 2.447e-06 3.069e-06 0.00% Amr::init() 1 1.942e-06 2.338e-06 2.741e-06 0.00% Amr::initialInit() 1 1.405e-06 1.628e-06 2.341e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 9.851e-07 1.125e-06 0.00% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.649 3.65 3.65 100.00% Amr::coarseTimeStep() 10 3.381 3.381 3.381 92.63% Amr::timeStep() 10 3.369 3.37 3.371 92.34% Castro::advance() 10 3.353 3.353 3.354 91.89% Castro::subcycle_advance_ctu() 10 3.27 3.277 3.284 89.95% Castro::do_advance_ctu() 10 3.27 3.277 3.284 89.95% Castro::construct_ctu_hydro_source() 10 2.277 2.37 2.43 66.57% Gravity::make_radial_gravity() 21 0.3388 0.3543 0.3749 10.27% Gravity::get_new_grav_vector() 11 0.2313 0.2343 0.2361 6.47% Castro::construct_old_gravity() 10 0.1946 0.2045 0.2211 6.06% Gravity::get_old_grav_vector() 10 0.1938 0.2038 0.2205 6.04% Amr::init() 1 0.2095 0.2096 0.2096 5.74% Castro::construct_new_gravity() 10 0.2043 0.2061 0.207 5.67% Amr::initialInit() 1 0.1928 0.1931 0.1935 5.30% FillPatchIterator::Initialize 41 0.1606 0.177 0.1873 5.13% Castro::initialize_do_advance() 10 0.1612 0.1703 0.1797 4.92% Amr::InitializeInit() 1 0.05942 0.1055 0.1607 4.40% Amr::defBaseLevel() 1 0.05942 0.1055 0.1607 4.40% FillPatchSingleLevel 41 0.1119 0.1305 0.1494 4.09% Castro::initData() 1 0.04229 0.08723 0.1415 3.88% Castro::estTimeStep() 21 0.02316 0.08687 0.1352 3.70% Amr::FinalizeInit() 1 0.03276 0.08751 0.1333 3.65% Castro::expand_state() 10 0.1082 0.1213 0.1317 3.61% Castro::clean_state() 62 0.1133 0.1175 0.122 3.34% FabArray::ParallelCopy() 41 0.07701 0.09392 0.117 3.20% Castro::computeInitialDt() 2 0.002361 0.05753 0.1037 2.84% FabArray::setVal() 143 0.06275 0.07058 0.08329 2.28% amrex::Copy() 193 0.05876 0.07222 0.08156 2.23% FabArray::ParallelCopy_finish() 41 0.03424 0.0518 0.08102 2.22% Castro::initialize_advance() 10 0.06538 0.07277 0.08063 2.21% Castro::do_new_sources() 10 0.05966 0.06649 0.07668 2.10% Castro::computeTemp() 63 0.06614 0.0701 0.0742 2.03% Amr::writePlotFile() 2 0.06827 0.06867 0.06899 1.89% Castro::reset_internal_energy(MultiFab) 63 0.04872 0.05031 0.05359 1.47% Castro::reset_internal_energy(Fab) 1008 0.0484 0.05 0.05327 1.46% Castro::do_old_sources() 10 0.03963 0.0447 0.04624 1.27% FabArray::ParallelCopy_nowait() 41 0.03586 0.04204 0.0436 1.19% Castro::normalize_species() 62 0.04162 0.04227 0.04348 1.19% StateDataPhysBCFunct::() 41 0.03233 0.03649 0.03957 1.08% StateData::FillBoundary(geom) 41 0.03223 0.03638 0.03946 1.08% Castro::construct_new_source() 50 0.02868 0.03124 0.03474 0.95% Castro::post_init() 1 0.02929 0.02956 0.02976 0.82% Gravity::interpolate_monopole_grav() 21 0.02806 0.02854 0.02911 0.80% Castro::construct_new_gravity_source() 10 0.02241 0.02508 0.02835 0.78% VisMF::Write(FabArray) 2 0.01356 0.01429 0.01794 0.49% Castro::post_timestep() 10 0.01537 0.01588 0.01645 0.45% Castro::apply_source_to_state() 20 0.01213 0.01374 0.01479 0.41% FabArray::Saxpy() 20 0.01208 0.01369 0.01475 0.40% Castro::check_for_nan() 20 0.01097 0.01202 0.01288 0.35% MultiFab::contains_nan() 20 0.01094 0.01199 0.01286 0.35% FabArray::setDomainBndry() 41 0.008556 0.01163 0.01269 0.35% Castro::Castro() 1 0.0105 0.01171 0.01243 0.34% Castro::construct_old_source() 50 0.007254 0.01013 0.01085 0.30% Castro::construct_old_gravity_source() 10 0.007204 0.01007 0.01078 0.30% Castro::computeNewDt() 9 0.008435 0.00846 0.008469 0.23% Castro::initMFs() 1 0.007028 0.007687 0.008094 0.22% AmrLevel::AmrLevel(dm) 1 0.005929 0.006475 0.006727 0.18% StateData::define() 4 0.005908 0.006449 0.006697 0.18% Castro::enforce_min_density() 62 0.005606 0.00592 0.006162 0.17% Castro::swap_state_time_levels() 10 0.002267 0.004642 0.005453 0.15% Castro::finalize_advance() 10 0.002995 0.003451 0.003971 0.11% Castro::buildMetrics() 1 0.001835 0.001983 0.002105 0.06% Castro::finalize_do_advance() 10 0.0006807 0.001517 0.001939 0.05% Castro::post_regrid() 1 0.001535 0.001636 0.001905 0.05% Amr::InitAmr() 1 0.0003067 0.0003403 0.000435 0.01% DistributionMapping::SFCProcessorMapDoIt() 1 1.273e-05 0.00011 0.0001574 0.00% DistributionMapping::LeastUsedCPUs() 1 7.791e-06 0.0001042 0.0001498 0.00% Castro::enforce_consistent_e() 1 7.665e-05 8.944e-05 0.0001066 0.00% FabArrayBase::getCPC() 41 6.494e-05 7.84e-05 9.883e-05 0.00% Amr::writeSmallPlotFile() 1 2.842e-05 5.533e-05 7.834e-05 0.00% Castro::enforce_speed_limit() 62 2.337e-05 2.76e-05 3.417e-05 0.00% FabArrayBase::CPC::define() 2 2.033e-05 2.52e-05 3.081e-05 0.00% Gravity::set_mass_offset() 10 9.347e-06 1.198e-05 1.491e-05 0.00% Gravity::swapTimeLevels() 10 9.888e-06 1.267e-05 1.48e-05 0.00% Castro::create_source_corrector() 10 7.872e-06 9.2e-06 1.101e-05 0.00% Amr::initSubcycle() 1 9.097e-06 1.004e-05 1.061e-05 0.00% Castro::FluxRegCrseInit 10 7.043e-06 8.098e-06 8.673e-06 0.00% Castro::retry_advance_ctu() 10 4.787e-06 5.28e-06 5.971e-06 0.00% Castro::FluxRegFineAdd() 10 2.09e-06 2.447e-06 3.069e-06 0.00% DistributionMapping::Distribute() 1 8.56e-07 9.851e-07 1.125e-06 0.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 41 B 98 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- AMReX (23.05-11-gab567b81cbf1) finalized